Wall clock time and date at job start Mon Mar 30 2020 19:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 120.00015 * 2 1 4 4 H 1.07992 * 119.99863 * 203.04868 * 3 2 1 5 5 C 1.38816 * 119.99983 * 23.04828 * 3 2 1 6 6 N 1.31623 * 119.99749 * 12.92856 * 5 3 2 7 7 Si 1.86800 * 120.00141 * 192.92666 * 5 3 2 8 8 H 1.48505 * 109.46900 * 59.99936 * 7 5 3 9 9 H 1.48499 * 109.46880 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46969 * 300.00052 * 7 5 3 11 11 C 1.46496 * 119.99872 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47273 * 89.99716 * 11 2 1 13 13 N 1.46497 * 109.47097 * 179.97438 * 12 11 2 14 14 C 1.34773 * 119.99994 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00110 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00168 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.47111 * 179.97438 * 16 14 13 18 18 C 1.33399 * 125.20115 * 89.99934 * 17 16 14 19 19 C 1.38420 * 114.92133 * 179.97438 * 18 17 16 20 20 C 1.33391 * 114.92005 * 359.97438 * 19 18 17 21 21 S 1.75880 * 125.20629 * 269.69428 * 17 16 14 22 22 H 1.09003 * 109.46964 * 275.12380 * 1 2 3 23 23 H 1.08993 * 109.47429 * 35.11963 * 1 2 3 24 24 H 1.08998 * 109.47063 * 155.12529 * 1 2 3 25 25 H 0.97001 * 119.99581 * 180.02562 * 6 5 3 26 26 H 1.09001 * 109.47113 * 329.99481 * 11 2 1 27 27 H 1.09000 * 109.47124 * 209.99832 * 11 2 1 28 28 H 1.09007 * 109.46574 * 59.99802 * 12 11 2 29 29 H 1.09000 * 109.47140 * 300.00106 * 12 11 2 30 30 H 0.97004 * 119.99982 * 0.02562 * 13 12 11 31 31 H 1.09000 * 109.47175 * 300.00031 * 16 14 13 32 32 H 1.08992 * 109.47061 * 59.99960 * 16 14 13 33 33 H 1.07998 * 122.53506 * 359.95964 * 18 17 16 34 34 H 1.07994 * 122.54135 * 180.02562 * 19 18 17 35 35 H 1.08000 * 125.20159 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4707 6 7 0.4118 2.2597 1.1460 7 14 2.3159 4.0074 0.1457 8 1 2.4196 4.2281 -1.3192 9 1 1.4736 5.0719 0.7479 10 1 3.6720 4.0475 0.7495 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 7 3.1854 -2.9782 -1.4438 14 6 3.5229 -3.5611 -2.6112 15 8 3.2193 -3.0357 -3.6614 16 6 4.2764 -4.8661 -2.6118 17 6 4.5276 -5.3005 -4.0328 18 6 5.5998 -4.9771 -4.7577 19 6 5.6131 -5.4937 -6.0418 20 6 4.5521 -6.2370 -6.3597 21 16 3.4557 -6.3176 -4.9868 22 1 -0.3633 0.0918 1.0236 23 1 -0.3634 0.8405 -0.5912 24 1 -0.3633 -0.9323 -0.4323 25 1 -0.0153 3.0662 1.4745 26 1 1.6084 -2.0286 0.5130 27 1 3.1499 -1.1386 0.5133 28 1 3.0415 -0.9499 -1.9568 29 1 1.5000 -1.8399 -1.9572 30 1 3.4279 -3.3986 -0.6039 31 1 5.2286 -4.7362 -2.0975 32 1 3.6871 -5.6261 -2.0988 33 1 6.3968 -4.3589 -4.3718 34 1 6.4217 -5.3096 -6.7336 35 1 4.3926 -6.7189 -7.3130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753040887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:29 Heat of formation + Delta-G solvation = 18.015590 kcal Electronic energy + Delta-G solvation = -17406.044404 eV Core-core repulsion = 14531.615805 eV Total energy + Delta-G solvation = -2874.428600 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.57795 -37.73189 -36.05225 -34.14478 -32.38198 -31.25833 -28.48491 -26.86712 -25.84299 -23.77886 -22.83354 -20.69575 -20.27873 -19.32974 -17.34286 -17.00523 -16.58183 -15.81307 -15.41646 -15.17888 -14.65730 -13.96939 -13.71612 -13.39040 -13.13686 -12.84112 -12.67995 -12.50465 -12.38825 -12.28665 -11.65374 -11.17746 -10.89879 -10.84742 -10.83973 -10.62174 -10.35176 -9.98965 -9.93727 -9.73452 -8.75376 -8.71597 -8.56088 -8.52286 -6.80377 -5.74801 -3.23040 0.88864 1.54562 1.90926 2.64222 2.81039 3.38597 3.44191 3.44782 3.50155 4.48930 4.50131 4.92817 4.95829 5.02198 5.23524 5.38965 5.47239 5.47720 5.62505 5.80949 5.90658 6.00288 6.17802 6.24918 6.38034 6.59285 6.64448 6.75662 6.88674 7.35824 7.69989 7.73365 7.79038 8.36173 8.44221 9.20524 9.82944 10.31022 11.30008 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.003258 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.496488 B = 8590.867836 C = 8938.991045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.724 5.724 14 C 0.506 3.494 15 O -0.532 6.532 16 C -0.073 4.073 17 C -0.152 4.152 18 C -0.131 4.131 19 C -0.132 4.132 20 C -0.218 4.218 21 S 0.105 5.895 22 H 0.033 0.967 23 H 0.042 0.958 24 H -0.001 1.001 25 H 0.254 0.746 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.397 0.603 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -18.803 -8.220 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.391 4.391 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.376 5.376 14 C 0.290 3.710 15 O -0.408 6.408 16 C -0.115 4.115 17 C -0.270 4.270 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.353 4.353 21 S 0.368 5.632 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.230 0.770 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.783 -18.944 -8.634 21.896 hybrid contribution 1.795 1.516 -0.125 2.353 sum 8.578 -17.428 -8.759 21.308 Atomic orbital electron populations 1.20839 0.82318 0.95602 0.99612 1.43774 1.01947 1.00318 1.85967 1.19153 0.98385 0.85574 1.35976 0.91388 1.25030 0.97818 0.98618 0.97958 1.70064 1.19360 1.27435 1.38255 0.86310 0.78434 0.83588 0.78062 1.20958 1.21573 1.20857 1.20837 0.96717 0.89159 0.91737 1.22430 0.95601 0.83019 1.02060 1.46075 1.58370 1.25285 1.07865 1.20406 0.80067 0.86188 0.84292 1.90736 1.54074 1.64724 1.31255 1.20196 1.02665 0.96136 0.92470 1.23811 0.98575 1.05114 0.99496 1.20069 0.99468 1.02435 0.94195 1.20118 0.99494 0.99754 0.96910 1.25569 0.98930 1.08000 1.02848 1.84187 1.24747 1.48699 1.05520 0.94844 0.93949 0.98270 0.93620 0.94101 0.92946 0.91614 0.92293 0.76976 0.87054 0.87934 0.84447 0.84411 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.98 59.85 0.54 4.52 16 2 N -0.60 -15.01 2.92 -181.12 -0.53 -15.54 16 3 C -0.26 -7.22 9.65 -15.06 -0.15 -7.36 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.00 0.12 5.10 -17.43 -0.09 0.03 16 6 N -0.91 -26.48 10.71 55.49 0.59 -25.88 16 7 Si 0.91 21.99 29.57 -169.99 -5.03 16.96 16 8 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.14 2.83 5.76 -4.04 -0.02 2.80 16 12 C 0.09 1.73 6.00 -4.04 -0.02 1.71 16 13 N -0.72 -10.10 5.56 -60.29 -0.33 -10.44 16 14 C 0.51 7.42 7.82 -10.99 -0.09 7.33 16 15 O -0.53 -10.34 16.03 5.55 0.09 -10.25 16 16 C -0.07 -0.74 6.19 -29.04 -0.18 -0.92 16 17 C -0.15 -1.79 5.00 -36.00 -0.18 -1.97 16 18 C -0.13 -1.49 10.05 -41.21 -0.41 -1.90 16 19 C -0.13 -1.36 10.18 -41.21 -0.42 -1.78 16 20 C -0.22 -2.19 11.23 29.04 0.33 -1.86 16 21 S 0.10 1.16 23.33 -107.50 -2.51 -1.34 16 22 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 23 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 24 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 27 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 315.62 15.07 4.76 4.76 Total: -1.00 -33.39 315.62 -8.53 -41.91 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.87 Total: -0.79 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.70 Total: 0.61 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.27 Total: -51.86 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.39 -8.53 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753040887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.928 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds