Wall clock time and date at job start Mon Mar 30 2020 19:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99653 * 2 1 4 4 H 1.48493 * 109.47418 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46957 * 120.00482 * 3 2 1 6 6 H 1.48496 * 109.47590 * 240.00029 * 3 2 1 7 7 C 1.38811 * 120.00115 * 180.28142 * 2 1 3 8 8 H 1.07996 * 119.99736 * 208.44372 * 7 2 1 9 9 N 1.36936 * 120.00309 * 28.44809 * 7 2 1 10 10 C 1.47425 * 125.64754 * 19.18399 * 9 7 2 11 11 C 1.55129 * 104.72388 * 155.82069 * 10 9 7 12 12 C 1.55161 * 101.48184 * 37.29428 * 11 10 9 13 13 H 1.08993 * 110.71514 * 205.96884 * 12 11 10 14 14 N 1.46498 * 110.71724 * 82.70073 * 12 11 10 15 15 C 1.34774 * 119.99837 * 160.02312 * 14 12 11 16 16 O 1.21741 * 120.00272 * 359.97438 * 15 14 12 17 17 C 1.46381 * 120.00358 * 179.97438 * 15 14 12 18 18 C 1.33981 * 119.22636 * 359.72320 * 17 15 14 19 19 O 1.35000 * 121.68676 * 180.12182 * 18 17 15 20 20 C 1.43249 * 116.82828 * 343.32127 * 19 18 17 21 21 C 1.53554 * 108.08932 * 45.25181 * 20 19 18 22 22 O 1.36205 * 119.23554 * 179.97438 * 17 15 14 23 23 C 1.47015 * 125.65041 * 199.49623 * 9 7 2 24 24 H 0.97002 * 119.99472 * 185.65980 * 1 2 3 25 25 H 1.09007 * 110.36577 * 274.75060 * 10 9 7 26 26 H 1.09002 * 110.36795 * 37.06696 * 10 9 7 27 27 H 1.09002 * 111.18735 * 279.19145 * 11 10 9 28 28 H 1.09002 * 110.93538 * 155.28657 * 11 10 9 29 29 H 0.96995 * 120.00437 * 340.01637 * 14 12 11 30 30 H 1.07995 * 119.15633 * 0.37314 * 18 17 15 31 31 H 1.09003 * 109.73810 * 285.60550 * 20 19 18 32 32 H 1.08999 * 109.74067 * 164.89819 * 20 19 18 33 33 H 1.08999 * 109.75471 * 182.21746 * 21 20 19 34 34 H 1.09002 * 109.79337 * 61.49912 * 21 20 19 35 35 H 1.09005 * 109.88112 * 300.43830 * 23 9 7 36 36 H 1.09002 * 109.88578 * 61.59898 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2124 7 6 2.0103 -1.2021 -0.0059 8 1 2.9925 -1.2607 0.4393 9 7 1.4497 -2.3137 -0.5763 10 6 0.3396 -2.3145 -1.5464 11 6 0.4961 -3.6480 -2.3235 12 6 0.9626 -4.6086 -1.1978 13 1 1.5422 -5.4340 -1.6110 14 7 -0.1839 -5.1090 -0.4354 15 6 -0.0657 -6.2323 0.2998 16 8 0.9937 -6.8314 0.3301 17 6 -1.2111 -6.7321 1.0621 18 6 -2.3680 -6.0576 1.0222 19 8 -3.4546 -6.4723 1.7076 20 6 -3.4470 -7.8269 2.1735 21 6 -2.0732 -8.1083 2.7989 22 8 -1.0743 -7.8691 1.7995 23 6 1.8509 -3.7042 -0.3178 24 1 -0.4849 -0.8360 0.0829 25 1 -0.6182 -2.2857 -1.0268 26 1 0.4291 -1.4670 -2.2260 27 1 1.2530 -3.5630 -3.1033 28 1 -0.4579 -3.9696 -2.7412 29 1 -1.0281 -4.6319 -0.4597 30 1 -2.4342 -5.1614 0.4232 31 1 -3.6164 -8.5048 1.3369 32 1 -4.2272 -7.9631 2.9223 33 1 -2.0238 -9.1463 3.1280 34 1 -1.9114 -7.4446 3.6483 35 1 2.8990 -3.8430 -0.5830 36 1 1.6976 -3.9449 0.7342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009999310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:06 Heat of formation + Delta-G solvation = -58.308824 kcal Electronic energy + Delta-G solvation = -20811.970915 eV Core-core repulsion = 17491.479770 eV Total energy + Delta-G solvation = -3320.491146 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22211 -39.49431 -37.54575 -36.91831 -34.15968 -32.69094 -31.49678 -29.39937 -28.82224 -27.17593 -25.53529 -24.29835 -22.30189 -20.38430 -20.23168 -19.56635 -18.51573 -18.33663 -17.47047 -16.58863 -15.97618 -15.44590 -15.06098 -14.80472 -14.46874 -14.36640 -14.16067 -13.71690 -13.64024 -13.28051 -13.07014 -12.50852 -12.09458 -11.91211 -11.24227 -11.01147 -10.87929 -10.75067 -10.71400 -10.50912 -10.35948 -10.01176 -9.78167 -9.55634 -8.88919 -8.39395 -8.31894 -6.93324 -6.11134 -3.16160 1.24936 2.56573 2.94372 3.34731 3.51102 3.54585 3.72382 3.72992 4.04970 4.55391 4.58894 4.64284 4.68789 4.97869 5.03030 5.09075 5.22415 5.22912 5.34664 5.55180 5.67093 5.70828 6.00382 6.10752 6.22892 6.33944 6.54741 6.67467 6.84470 6.91598 6.97095 7.13909 7.63158 7.82903 8.31728 8.49416 9.01421 9.80770 10.36453 11.21107 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.004602 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.322109 B = 6082.337549 C = 6471.936479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.024 4.024 3 Si 1.064 2.936 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.336 4.336 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.142 3.858 11 C -0.144 4.144 12 C 0.135 3.865 13 H 0.094 0.906 14 N -0.705 5.705 15 C 0.575 3.425 16 O -0.526 6.526 17 C -0.067 4.067 18 C 0.005 3.995 19 O -0.300 6.300 20 C 0.014 3.986 21 C 0.017 3.983 22 O -0.286 6.286 23 C 0.125 3.875 24 H 0.267 0.733 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.398 0.602 30 H 0.180 0.820 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 -14.623 0.703 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.464 4.464 8 H 0.081 0.919 9 N -0.328 5.328 10 C 0.016 3.984 11 C -0.183 4.183 12 C 0.030 3.970 13 H 0.112 0.888 14 N -0.358 5.358 15 C 0.362 3.638 16 O -0.403 6.403 17 C -0.115 4.115 18 C -0.061 4.061 19 O -0.212 6.212 20 C -0.061 4.061 21 C -0.059 4.059 22 O -0.199 6.199 23 C -0.002 4.002 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.197 0.803 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.749 -13.360 0.742 15.462 hybrid contribution -0.327 -1.531 0.388 1.613 sum -8.075 -14.891 1.129 16.977 Atomic orbital electron populations 1.70807 1.06655 1.29955 1.48160 1.25760 0.96400 1.01114 0.99347 0.83531 0.74840 0.76014 0.76234 1.21113 1.22023 1.22079 1.19736 0.99740 0.88296 1.38594 0.91868 1.44566 1.40215 1.00458 1.47600 1.21592 0.91715 0.94095 0.90955 1.23190 1.01287 0.96895 0.96884 1.22016 0.86776 0.96189 0.91972 0.88782 1.45812 1.15698 1.25661 1.48658 1.17060 0.86625 0.80804 0.79344 1.90835 1.28540 1.57894 1.63067 1.20452 0.94234 0.93843 1.03018 1.23183 0.84817 1.00352 0.97739 1.86106 1.37895 1.29177 1.68043 1.23720 0.99092 0.82481 1.00836 1.23677 0.87504 1.04261 0.90442 1.86426 1.49029 1.37136 1.47355 1.21749 0.96081 0.85619 0.96735 0.92241 0.95778 0.92883 0.89853 0.91140 0.76651 0.80325 0.90115 0.86135 0.86104 0.90374 0.94631 0.95318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 13.00 55.49 0.72 -26.50 16 2 C -0.02 -0.70 5.09 -17.43 -0.09 -0.79 16 3 Si 1.06 25.37 30.00 -169.99 -5.10 20.27 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.34 -9.58 10.00 -15.06 -0.15 -9.73 16 8 H 0.06 1.82 7.97 -52.49 -0.42 1.40 16 9 N -0.60 -15.18 3.26 -169.94 -0.55 -15.74 16 10 C 0.14 3.12 5.36 -2.41 -0.01 3.10 16 11 C -0.14 -2.38 6.65 -24.46 -0.16 -2.54 16 12 C 0.13 2.37 3.24 -66.10 -0.21 2.16 16 13 H 0.09 1.61 7.70 -51.93 -0.40 1.21 16 14 N -0.70 -11.24 5.04 -53.43 -0.27 -11.51 16 15 C 0.58 10.01 7.73 -12.99 -0.10 9.91 16 16 O -0.53 -11.09 16.65 -10.06 -0.17 -11.26 16 17 C -0.07 -0.99 6.61 -37.80 -0.25 -1.24 16 18 C 0.01 0.07 10.58 29.24 0.31 0.38 16 19 O -0.30 -3.41 10.47 -30.82 -0.32 -3.73 16 20 C 0.01 0.11 7.30 37.44 0.27 0.39 16 21 C 0.02 0.16 7.31 37.44 0.27 0.43 16 22 O -0.29 -4.18 10.28 -45.73 -0.47 -4.65 16 23 C 0.12 2.75 6.98 -3.07 -0.02 2.72 16 24 H 0.27 7.88 6.19 -40.82 -0.25 7.62 16 25 H 0.02 0.55 6.81 -51.93 -0.35 0.20 16 26 H 0.05 1.28 8.07 -51.93 -0.42 0.86 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.40 5.47 6.46 -40.82 -0.26 5.21 16 30 H 0.18 1.88 6.08 -52.49 -0.32 1.56 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -35.49 301.20 -6.37 -41.86 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.60 Total: 1.92 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.14 Total: 4.80 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.10 Total: -53.75 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.96 Total: -19.63 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.10 Total: 20.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.49 -6.37 -41.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009999310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.450 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds