Wall clock time and date at job start Mon Mar 30 2020 19:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.50702 * 109.47034 * 90.00162 * 4 3 2 6 6 H 1.08002 * 119.99777 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00392 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99817 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00435 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46950 * 89.99471 * 9 7 5 11 11 H 1.48499 * 109.47296 * 209.99467 * 9 7 5 12 12 H 1.48497 * 109.47067 * 330.00242 * 9 7 5 13 13 C 1.34777 * 119.99873 * 90.00333 * 3 2 1 14 14 O 1.21283 * 120.00222 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99772 * 359.97438 * 13 3 2 16 16 C 1.53004 * 109.46843 * 180.02562 * 15 13 3 17 17 H 1.08998 * 110.54431 * 54.30055 * 16 15 13 18 18 C 1.54229 * 110.60641 * 177.15045 * 16 15 13 19 19 C 1.51314 * 103.55715 * 118.51450 * 18 16 15 20 20 O 1.21228 * 125.39306 * 179.97438 * 19 18 16 21 21 N 1.33863 * 109.20709 * 359.97438 * 19 18 16 22 22 C 1.34222 * 114.53245 * 0.09410 * 21 19 18 23 23 O 1.21228 * 125.59573 * 179.97438 * 22 21 19 24 24 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 25 25 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 27 27 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 28 28 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 29 29 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 30 30 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 31 31 H 0.96996 * 120.00179 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47685 * 300.00183 * 15 13 3 33 33 H 1.08997 * 109.47517 * 60.00530 * 15 13 3 34 34 H 1.09008 * 110.60395 * 237.03479 * 18 16 15 35 35 H 1.09007 * 110.60442 * 359.97438 * 18 16 15 36 36 H 0.97005 * 122.76569 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 1.0144 2.7796 -1.7106 6 1 0.1209 2.7237 -1.1065 7 6 1.0080 3.5003 -2.8859 8 7 2.0962 3.5689 -3.6212 9 14 -0.5460 4.3806 -3.4333 10 1 -0.5559 5.7582 -2.8787 11 1 -0.5828 4.4438 -4.9165 12 1 -1.7345 3.6398 -2.9396 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1673 15 6 1.9913 1.3063 2.4723 16 6 2.3223 2.2438 3.6352 17 1 1.7746 3.1812 3.5386 18 6 2.0064 1.5672 4.9847 19 6 3.3510 1.5108 5.6765 20 8 3.5548 1.0479 6.7783 21 7 4.2796 2.0530 4.8792 22 6 3.8119 2.5010 3.7036 23 8 4.4744 3.0256 2.8344 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.0696 2.7967 -1.1359 30 1 2.5598 1.3420 -2.0258 31 1 2.0918 4.0762 -4.4479 32 1 0.9433 1.0124 2.5299 33 1 2.6212 0.4186 2.5302 34 1 1.3036 2.1695 5.5606 35 1 1.6131 0.5628 4.8275 36 1 5.2142 2.1180 5.1306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463929.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:55 Heat of formation + Delta-G solvation = -105.281101 kcal Electronic energy + Delta-G solvation = -20873.893823 eV Core-core repulsion = 17551.365806 eV Total energy + Delta-G solvation = -3322.528016 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84887 -39.14784 -38.39477 -35.89674 -35.28627 -33.57651 -32.65852 -29.99822 -29.06823 -26.95753 -25.09863 -22.77846 -22.74433 -21.79773 -20.69959 -18.38302 -17.90113 -16.93633 -16.45601 -16.27310 -16.16055 -15.33865 -15.21002 -14.52074 -14.29761 -14.06700 -13.79366 -13.46739 -13.16973 -13.00386 -12.54956 -12.44008 -12.12903 -11.70265 -11.52474 -11.39266 -11.14363 -10.92692 -10.70302 -10.70037 -10.47680 -10.35239 -10.03970 -9.92323 -9.55126 -8.84695 -8.40605 -7.61790 -6.01546 -4.05720 1.45190 2.67255 2.69683 3.31583 3.37291 3.38390 3.46532 3.79219 3.98678 4.18171 4.30410 4.46323 4.61548 5.04731 5.15656 5.22245 5.30333 5.33307 5.47884 5.54441 5.74764 5.78660 5.82899 5.89964 6.10914 6.29489 6.55800 6.74988 7.08851 7.22728 7.49887 7.59346 7.85308 7.94935 8.27049 8.45204 8.93760 9.13689 9.58918 11.06678 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.004808 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.355126 B = 5822.243780 C = 6145.082857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.497 3.503 14 O -0.515 6.515 15 C -0.129 4.129 16 C -0.109 4.109 17 H 0.133 0.867 18 C -0.156 4.156 19 C 0.532 3.468 20 O -0.497 6.497 21 N -0.687 5.687 22 C 0.522 3.478 23 O -0.432 6.432 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -8.491 15.065 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.282 3.718 14 O -0.390 6.390 15 C -0.170 4.170 16 C -0.130 4.130 17 H 0.151 0.849 18 C -0.195 4.195 19 C 0.321 3.679 20 O -0.370 6.370 21 N -0.354 5.354 22 C 0.307 3.693 23 O -0.298 6.298 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.152 -7.746 14.879 16.814 hybrid contribution -0.442 0.457 -0.323 0.714 sum -1.594 -7.289 14.557 16.357 Atomic orbital electron populations 1.22234 0.96348 1.00842 1.03377 1.21379 0.94518 0.83911 1.01548 1.48218 1.64135 1.13166 1.07731 1.19272 0.97491 0.92482 0.77994 1.21433 0.97417 1.31095 1.06051 0.92338 1.24940 0.96360 0.96335 0.96550 1.69935 1.27317 1.41680 1.14499 0.86539 0.83266 0.80251 0.77575 1.20626 1.21243 1.19977 1.20063 0.79536 0.87291 0.84908 1.90767 1.44359 1.17121 1.86791 1.21712 1.04332 0.98392 0.92539 1.21847 0.94007 1.02708 0.94481 0.84944 1.22613 0.95940 1.05319 0.95658 1.20760 0.88039 0.74932 0.84212 1.90796 1.84401 1.43379 1.18410 1.44992 1.13789 1.56852 1.19728 1.20838 0.91209 0.76905 0.80333 1.90939 1.64215 1.36067 1.38544 0.90549 0.92875 0.93276 0.90795 0.92232 0.93834 0.95256 0.92789 0.87560 0.89224 0.85942 0.85976 0.74949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.65 5.98 -4.04 -0.02 1.63 16 3 N -0.60 -12.09 2.46 -175.06 -0.43 -12.52 16 4 C 0.25 6.36 5.21 -5.19 -0.03 6.33 16 5 C -0.52 -14.37 8.94 -34.44 -0.31 -14.68 16 6 H 0.06 1.59 7.42 -52.49 -0.39 1.20 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.50 9.60 7.35 -10.99 -0.08 9.52 16 14 O -0.52 -12.42 13.33 -16.71 -0.22 -12.64 16 15 C -0.13 -1.56 3.57 -27.88 -0.10 -1.66 16 16 C -0.11 -1.19 2.70 -90.82 -0.24 -1.44 16 17 H 0.13 1.54 7.96 -51.93 -0.41 1.12 16 18 C -0.16 -1.12 6.67 -26.94 -0.18 -1.30 16 19 C 0.53 5.30 8.55 -11.09 -0.09 5.20 16 20 O -0.50 -6.38 18.02 5.60 0.10 -6.28 16 21 N -0.69 -7.12 5.49 -11.32 -0.06 -7.18 16 22 C 0.52 7.08 7.74 -10.93 -0.08 7.00 16 23 O -0.43 -8.17 15.64 -16.67 -0.26 -8.43 16 24 H 0.08 1.32 7.28 -51.92 -0.38 0.94 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 27 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 28 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 30 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.11 1.00 7.18 -51.93 -0.37 0.63 16 33 H 0.09 0.91 7.40 -51.93 -0.38 0.53 16 34 H 0.12 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.12 0.63 7.74 -51.93 -0.40 0.23 16 36 H 0.41 3.68 8.96 -40.82 -0.37 3.32 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -36.39 306.88 -5.99 -42.39 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.60 Total: -0.89 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -0.86 Total: 10.21 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.24 Total: -45.58 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.38 Total: -27.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.39 -5.99 -42.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463929.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.892 kcal (2) G-P(sol) polarization free energy of solvation -36.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds