Wall clock time and date at job start Mon Mar 30 2020 19:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 14 14 O 1.21281 * 120.00142 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00021 * 0.02562 * 13 3 2 16 16 C 1.52994 * 109.47165 * 179.97438 * 15 13 3 17 17 H 1.09005 * 110.54333 * 303.60433 * 16 15 13 18 18 C 1.54230 * 110.60503 * 180.58952 * 16 15 13 19 19 C 1.51313 * 103.55435 * 241.47883 * 18 16 15 20 20 O 1.21224 * 125.39812 * 180.02562 * 19 18 16 21 21 N 1.33874 * 109.20961 * 0.02562 * 19 18 16 22 22 C 1.33878 * 114.47667 * 359.97438 * 21 19 18 23 23 O 1.21222 * 125.40172 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 26 26 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 27 27 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 28 28 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 29 29 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 30 30 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 31 31 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47031 * 299.99740 * 15 13 3 33 33 H 1.08999 * 109.46714 * 59.99599 * 15 13 3 34 34 H 1.08993 * 110.61101 * 359.97438 * 18 16 15 35 35 H 1.08999 * 110.60230 * 122.96958 * 18 16 15 36 36 H 0.97005 * 122.76579 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.3784 3.4748 4.2600 11 1 -0.2012 5.5941 4.2005 12 1 -1.3442 4.7859 2.2204 13 6 2.2430 2.0166 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9913 1.3063 -2.4724 16 6 2.3223 2.2438 -3.6353 17 1 1.7467 3.1663 -3.5586 18 6 2.0596 1.5469 -4.9859 19 6 3.4216 1.5255 -5.6447 20 8 3.6661 1.0601 -6.7370 21 7 4.3140 2.1020 -4.8301 22 6 3.8052 2.5425 -3.6728 23 8 4.4330 3.0927 -2.7938 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.0644 2.7986 1.1383 30 1 2.5506 1.3453 2.0283 31 1 2.0715 4.0835 4.4438 32 1 2.6213 0.4186 -2.5302 33 1 0.9433 1.0125 -2.5298 34 1 1.6937 0.5323 -4.8293 35 1 1.3534 2.1230 -5.5837 36 1 5.2521 2.1932 -5.0595 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:59 Heat of formation + Delta-G solvation = -104.371790 kcal Electronic energy + Delta-G solvation = -20892.191958 eV Core-core repulsion = 17569.703373 eV Total energy + Delta-G solvation = -3322.488586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.86906 -39.14416 -38.37973 -35.88173 -35.28092 -33.57850 -32.65678 -29.99283 -29.06453 -26.95265 -25.08625 -22.77621 -22.74243 -21.79958 -20.69901 -18.36800 -17.89018 -16.93450 -16.45645 -16.26432 -16.16034 -15.32600 -15.20041 -14.52389 -14.29074 -14.05517 -13.77573 -13.45955 -13.16627 -13.00031 -12.52496 -12.44317 -12.12700 -11.69509 -11.52324 -11.39591 -11.13570 -10.92815 -10.71799 -10.69761 -10.46131 -10.33758 -10.03987 -9.90137 -9.54180 -8.82832 -8.40606 -7.60903 -6.01334 -4.05424 1.46254 2.69113 2.71282 3.30319 3.37334 3.39856 3.47570 3.79674 3.99541 4.19404 4.30872 4.46569 4.61956 5.05231 5.15443 5.22673 5.30594 5.33519 5.48078 5.55023 5.74788 5.78809 5.83204 5.90837 6.11040 6.29694 6.57427 6.74960 7.09224 7.23931 7.50319 7.59913 7.87298 7.95246 8.27368 8.45822 8.94164 9.14613 9.59183 11.06875 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.004833 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.543508 B = 5791.944886 C = 6126.295056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.496 3.504 14 O -0.513 6.513 15 C -0.129 4.129 16 C -0.108 4.108 17 H 0.132 0.868 18 C -0.156 4.156 19 C 0.532 3.468 20 O -0.497 6.497 21 N -0.686 5.686 22 C 0.520 3.480 23 O -0.431 6.431 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -8.515 -15.079 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.281 3.719 14 O -0.388 6.388 15 C -0.170 4.170 16 C -0.130 4.130 17 H 0.150 0.850 18 C -0.195 4.195 19 C 0.320 3.680 20 O -0.370 6.370 21 N -0.353 5.353 22 C 0.305 3.695 23 O -0.296 6.296 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.066 -7.751 -14.892 16.822 hybrid contribution -0.456 0.453 0.340 0.727 sum -1.522 -7.299 -14.551 16.350 Atomic orbital electron populations 1.22237 0.96370 1.00833 1.03372 1.21374 0.94508 0.83933 1.01535 1.48220 1.64242 1.13108 1.07732 1.19269 0.97517 0.92437 0.77999 1.21436 0.97456 1.31016 1.06079 0.92341 1.24940 0.96356 0.96340 0.96554 1.69934 1.27421 1.41737 1.14332 0.86538 0.83249 0.79289 0.78568 1.20735 1.21171 1.19946 1.20075 0.79611 0.87332 0.84908 1.90778 1.44203 1.17035 1.86765 1.21713 1.04339 0.98383 0.92553 1.21838 0.94371 1.02331 0.94438 0.85008 1.22608 0.95737 1.05219 0.95967 1.20777 0.88312 0.75023 0.83877 1.90794 1.83359 1.43841 1.18994 1.44923 1.14195 1.55894 1.20253 1.20759 0.90916 0.77374 0.80442 1.90947 1.66050 1.35297 1.37301 0.92884 0.90557 0.93271 0.92231 0.90817 0.93834 0.95277 0.92793 0.89234 0.87575 0.85986 0.85952 0.74926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.65 5.98 -4.04 -0.02 1.63 16 3 N -0.60 -12.11 2.46 -175.06 -0.43 -12.54 16 4 C 0.25 6.37 5.20 -5.19 -0.03 6.34 16 5 C -0.52 -14.38 8.92 -34.44 -0.31 -14.69 16 6 H 0.06 1.59 7.42 -52.49 -0.39 1.20 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.50 9.59 7.34 -10.98 -0.08 9.51 16 14 O -0.51 -12.38 13.15 -17.45 -0.23 -12.61 16 15 C -0.13 -1.57 3.59 -27.88 -0.10 -1.67 16 16 C -0.11 -1.19 2.72 -90.83 -0.25 -1.43 16 17 H 0.13 1.52 8.03 -51.93 -0.42 1.10 16 18 C -0.16 -1.12 6.67 -26.94 -0.18 -1.30 16 19 C 0.53 5.32 8.55 -11.09 -0.09 5.22 16 20 O -0.50 -6.40 18.02 5.61 0.10 -6.30 16 21 N -0.69 -7.18 5.48 -11.39 -0.06 -7.24 16 22 C 0.52 7.11 7.71 -11.08 -0.09 7.02 16 23 O -0.43 -8.21 15.42 -17.40 -0.27 -8.48 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.32 7.26 -51.93 -0.38 0.94 16 26 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 27 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 28 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 30 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.09 0.91 7.40 -51.93 -0.38 0.52 16 33 H 0.11 1.01 7.18 -51.93 -0.37 0.63 16 34 H 0.12 0.63 7.74 -51.93 -0.40 0.23 16 35 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.41 3.73 8.96 -40.82 -0.37 3.36 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -36.46 306.51 -6.02 -42.49 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.60 Total: -0.92 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.86 Total: 10.25 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.24 Total: -45.67 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.40 Total: -27.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.46 -6.02 -42.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.887 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds