Wall clock time and date at job start Mon Mar 30 2020 19:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 N 1.39993 * 119.63353 * 299.72885 * 12 2 1 14 14 C 1.34711 * 120.32298 * 200.03738 * 13 12 2 15 15 O 1.21284 * 120.09786 * 178.90326 * 14 13 12 16 16 C 1.50145 * 119.83871 * 359.17846 * 14 13 12 17 17 C 1.54251 * 110.18087 * 204.29801 * 16 14 13 18 18 C 1.55117 * 101.96284 * 220.50744 * 17 16 14 19 19 O 1.44432 * 103.56297 * 36.57237 * 18 17 16 20 20 C 1.43899 * 106.99876 * 320.28764 * 19 18 17 21 21 C 1.52462 * 110.56279 * 326.28642 * 16 14 13 22 22 C 1.34628 * 119.63053 * 119.99874 * 12 2 1 23 23 O 1.21281 * 119.93409 * 359.20027 * 22 12 2 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.89213 * 20.28325 * 13 12 2 29 29 H 1.09004 * 110.93565 * 338.67309 * 17 16 14 30 30 H 1.09004 * 110.93520 * 102.33852 * 17 16 14 31 31 H 1.08997 * 110.60176 * 278.05299 * 18 17 16 32 32 H 1.09001 * 110.60653 * 155.09236 * 18 17 16 33 33 H 1.08996 * 109.91427 * 267.01287 * 20 19 18 34 34 H 1.09000 * 110.07014 * 145.81620 * 20 19 18 35 35 H 1.09004 * 109.50768 * 287.98857 * 21 16 14 36 36 H 1.09002 * 109.54518 * 167.87683 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 7 1.6801 -2.0327 -1.4070 14 6 2.4111 -2.7949 -2.2433 15 8 2.1264 -3.9623 -2.4078 16 6 3.5832 -2.1973 -2.9669 17 6 3.8762 -2.9943 -4.2546 18 6 5.4267 -3.0403 -4.2585 19 8 5.7650 -3.1752 -2.8608 20 6 4.8611 -2.3306 -2.1258 21 6 3.3154 -0.7348 -3.3040 22 6 2.7918 -0.0293 -2.0774 23 8 3.0680 1.1359 -1.8851 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 0.9138 -2.4154 -0.9519 29 1 3.4570 -3.9987 -4.1950 30 1 3.5001 -2.4684 -5.1322 31 1 5.8369 -2.1159 -4.6650 32 1 5.7835 -3.9009 -4.8243 33 1 5.3100 -1.3489 -1.9748 34 1 4.6258 -2.7833 -1.1625 35 1 2.5753 -0.6748 -4.1021 36 1 4.2411 -0.2602 -3.6296 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335837708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:34 Heat of formation + Delta-G solvation = -79.379890 kcal Electronic energy + Delta-G solvation = -21795.688195 eV Core-core repulsion = 18474.283340 eV Total energy + Delta-G solvation = -3321.404856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27969 -38.97447 -38.20624 -36.02675 -34.30849 -33.23257 -31.09287 -29.91685 -28.88140 -27.09495 -25.40946 -23.75268 -22.87107 -21.65100 -20.80638 -18.19842 -17.86158 -17.20325 -16.25920 -16.01186 -15.86968 -15.52462 -15.08480 -14.83890 -14.36814 -14.16941 -13.76729 -13.59433 -13.09921 -12.80767 -12.50260 -12.21487 -11.89136 -11.60864 -11.36472 -11.20893 -11.14212 -11.02653 -10.95497 -10.59076 -10.42384 -10.24682 -10.00325 -9.63982 -9.45130 -9.19517 -8.62069 -7.58692 -6.26382 -4.36897 2.38479 2.44105 3.08614 3.20493 3.25460 3.28733 3.63834 3.84060 4.22738 4.24335 4.53204 4.63151 4.70103 4.96622 5.06244 5.11019 5.35557 5.44643 5.54563 5.56004 5.63118 5.85090 5.94831 6.04862 6.40918 6.55120 6.66416 6.70880 6.72328 7.19607 7.31451 7.50583 7.74704 7.91849 8.07839 8.26185 8.58769 8.79403 9.31553 10.78442 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.006649 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.018840 B = 4210.041200 C = 4531.357994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.258 3.742 3 H 0.085 0.915 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.388 5.388 13 N -0.495 5.495 14 C 0.528 3.472 15 O -0.534 6.534 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.047 3.953 19 O -0.371 6.371 20 C 0.068 3.932 21 C -0.129 4.129 22 C 0.508 3.492 23 O -0.531 6.531 24 H 0.018 0.982 25 H 0.102 0.898 26 H 0.030 0.970 27 H 0.268 0.732 28 H 0.428 0.572 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -4.619 -11.973 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.160 3.840 3 H 0.103 0.897 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.215 5.215 13 N -0.243 5.243 14 C 0.313 3.687 15 O -0.409 6.409 16 C -0.117 4.117 17 C -0.175 4.175 18 C -0.029 4.029 19 O -0.290 6.290 20 C -0.009 4.009 21 C -0.169 4.169 22 C 0.294 3.706 23 O -0.406 6.406 24 H 0.037 0.963 25 H 0.120 0.880 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.272 0.728 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.797 -4.527 -11.783 13.182 hybrid contribution -0.336 -0.434 1.111 1.239 sum 3.461 -4.960 -10.673 12.267 Atomic orbital electron populations 1.22149 0.97437 0.99738 1.01744 1.19461 0.91694 0.94231 0.78617 0.89713 1.21212 1.32973 1.13565 0.89935 0.91941 1.24867 0.94565 0.94840 0.99078 1.69839 1.35615 1.22280 1.24408 0.86480 0.79406 0.79622 0.81545 1.20022 1.20982 1.20072 1.48287 1.50337 0.98407 1.24434 1.45180 1.31351 1.01689 1.46050 1.19847 0.83293 0.85725 0.79845 1.90744 1.69781 1.15073 1.65282 1.21728 0.95902 0.96204 0.97893 1.23202 0.96974 1.02379 0.94933 1.23605 0.93548 1.02020 0.83764 1.88926 1.55828 1.66666 1.17532 1.23081 0.86279 0.96148 0.95408 1.21966 1.04503 0.92811 0.97663 1.20252 0.79292 0.87017 0.84020 1.90752 1.58511 1.15748 1.75609 0.96275 0.87983 0.95126 0.92249 0.72807 0.87996 0.89368 0.91857 0.88588 0.90573 0.88979 0.87697 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.07 37.16 0.34 -2.98 16 2 C 0.26 6.05 2.68 -69.08 -0.18 5.87 16 3 H 0.09 2.27 6.86 -51.93 -0.36 1.91 16 4 C -0.54 -13.66 8.56 -34.44 -0.29 -13.95 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.48 11.32 55.43 0.63 -22.86 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.39 -7.72 3.23 -54.91 -0.18 -7.90 16 13 N -0.49 -8.82 5.85 31.06 0.18 -8.64 16 14 C 0.53 8.85 6.64 -11.28 -0.07 8.77 16 15 O -0.53 -9.95 16.42 5.55 0.09 -9.86 16 16 C -0.11 -1.58 0.66 -155.26 -0.10 -1.69 16 17 C -0.14 -1.53 6.18 -24.96 -0.15 -1.68 16 18 C 0.05 0.49 7.73 38.28 0.30 0.79 16 19 O -0.37 -5.37 11.53 -35.23 -0.41 -5.77 16 20 C 0.07 1.02 6.78 37.45 0.25 1.27 16 21 C -0.13 -1.74 4.68 -28.07 -0.13 -1.87 16 22 C 0.51 9.55 7.28 -10.97 -0.08 9.47 16 23 O -0.53 -11.82 16.38 5.56 0.09 -11.73 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.03 0.61 7.18 -51.93 -0.37 0.24 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.43 7.50 7.83 -182.68 -1.43 6.07 16 29 H 0.10 1.29 6.80 -51.93 -0.35 0.93 16 30 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.11 7.55 -51.93 -0.39 0.72 16 34 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 35 H 0.10 1.17 7.97 -51.93 -0.41 0.76 16 36 H 0.11 1.30 7.96 -51.93 -0.41 0.89 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -29.50 295.31 -6.05 -35.55 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.66 Total: 5.69 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.23 Total: 5.72 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.63 Total: -39.39 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.22 Total: -27.36 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.50 -6.05 -35.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335837708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.831 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds