Wall clock time and date at job start Mon Mar 30 2020 19:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 N 1.39993 * 119.63353 * 299.72885 * 12 2 1 14 14 C 1.34711 * 120.32298 * 200.03738 * 13 12 2 15 15 O 1.21284 * 120.09786 * 178.90326 * 14 13 12 16 16 C 1.50145 * 119.83871 * 359.17846 * 14 13 12 17 17 C 1.54251 * 110.18087 * 204.29801 * 16 14 13 18 18 C 1.55117 * 101.96284 * 220.50744 * 17 16 14 19 19 O 1.44432 * 103.56297 * 36.57237 * 18 17 16 20 20 C 1.43899 * 106.99876 * 320.28764 * 19 18 17 21 21 C 1.52462 * 110.56279 * 326.28642 * 16 14 13 22 22 C 1.34628 * 119.63053 * 119.99874 * 12 2 1 23 23 O 1.21281 * 119.93409 * 359.20027 * 22 12 2 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.89213 * 20.28325 * 13 12 2 29 29 H 1.09004 * 110.93565 * 338.67309 * 17 16 14 30 30 H 1.09004 * 110.93520 * 102.33852 * 17 16 14 31 31 H 1.08997 * 110.60176 * 278.05299 * 18 17 16 32 32 H 1.09001 * 110.60653 * 155.09236 * 18 17 16 33 33 H 1.08996 * 109.91427 * 267.01287 * 20 19 18 34 34 H 1.09000 * 110.07014 * 145.81620 * 20 19 18 35 35 H 1.09004 * 109.50768 * 287.98857 * 21 16 14 36 36 H 1.09002 * 109.54518 * 167.87683 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 7 1.6801 -2.0327 -1.4070 14 6 2.4111 -2.7949 -2.2433 15 8 2.1264 -3.9623 -2.4078 16 6 3.5832 -2.1973 -2.9669 17 6 3.8762 -2.9943 -4.2546 18 6 5.4267 -3.0403 -4.2585 19 8 5.7650 -3.1752 -2.8608 20 6 4.8611 -2.3306 -2.1258 21 6 3.3154 -0.7348 -3.3040 22 6 2.7918 -0.0293 -2.0774 23 8 3.0680 1.1359 -1.8851 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 0.9138 -2.4154 -0.9519 29 1 3.4570 -3.9987 -4.1950 30 1 3.5001 -2.4684 -5.1322 31 1 5.8369 -2.1159 -4.6650 32 1 5.7835 -3.9009 -4.8243 33 1 5.3100 -1.3489 -1.9748 34 1 4.6258 -2.7833 -1.1625 35 1 2.5753 -0.6748 -4.1021 36 1 4.2411 -0.2602 -3.6296 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335837708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:34 Heat of formation + Delta-G solvation = -100.845037 kcal Electronic energy + Delta-G solvation = -21796.618994 eV Core-core repulsion = 18474.283340 eV Total energy + Delta-G solvation = -3322.335654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.57193 -40.36052 -39.50538 -37.62964 -35.86752 -34.68186 -32.78188 -30.99313 -30.38681 -28.33314 -27.36411 -24.99076 -23.99532 -23.19372 -22.21413 -19.55695 -19.26891 -18.73220 -18.01337 -17.25085 -17.11675 -16.79087 -16.67132 -16.11248 -15.92232 -15.50794 -15.20219 -14.93087 -14.77507 -14.02291 -13.73752 -13.64766 -13.22326 -13.16226 -12.98428 -12.80911 -12.56724 -12.36321 -12.28110 -12.15099 -12.05485 -11.95856 -11.28363 -11.22038 -10.83266 -10.70761 -10.57590 -9.18443 -8.23611 -6.40884 0.90464 1.04622 1.39196 1.40482 1.47778 1.65195 2.29264 2.41267 2.83632 3.05021 3.14026 3.36411 3.49696 3.62392 4.04538 4.16259 4.31423 4.44921 4.48366 4.59330 4.61221 4.68544 4.83940 4.85956 4.87425 4.91106 5.11649 5.13506 5.39696 5.59224 5.68341 5.76976 5.86510 6.02267 6.63409 6.65160 6.72278 7.21228 7.34972 8.79680 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.006649 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.018840 B = 4210.041200 C = 4531.357994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.263 3.737 3 H 0.046 0.954 4 C -0.548 4.548 5 H 0.055 0.945 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.270 1.270 12 N -0.394 5.394 13 N -0.495 5.495 14 C 0.529 3.471 15 O -0.552 6.552 16 C -0.109 4.109 17 C -0.129 4.129 18 C 0.042 3.958 19 O -0.392 6.392 20 C 0.070 3.930 21 C -0.114 4.114 22 C 0.500 3.500 23 O -0.572 6.572 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.269 0.731 28 H 0.426 0.574 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.140 0.860 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -5.497 -13.885 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.163 3.837 3 H 0.063 0.937 4 C -0.587 4.587 5 H 0.073 0.927 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.195 1.195 12 N -0.219 5.219 13 N -0.243 5.243 14 C 0.316 3.684 15 O -0.428 6.428 16 C -0.113 4.113 17 C -0.166 4.166 18 C -0.033 4.033 19 O -0.311 6.311 20 C -0.008 4.008 21 C -0.153 4.153 22 C 0.289 3.711 23 O -0.450 6.450 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.269 0.731 29 H 0.105 0.895 30 H 0.143 0.857 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.157 0.843 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.476 -5.426 -13.725 15.423 hybrid contribution -0.522 -0.190 1.679 1.769 sum 3.954 -5.616 -12.046 13.867 Atomic orbital electron populations 1.21949 0.96280 1.00385 1.01199 1.19025 0.92486 0.92528 0.79658 0.93655 1.21408 1.32865 1.13358 0.91049 0.92673 1.25553 0.94781 0.95456 1.01522 1.69947 1.36368 1.23233 1.24916 0.85617 0.78553 0.78826 0.78710 1.20290 1.20413 1.19530 1.48052 1.50677 0.99320 1.23861 1.45230 1.31715 1.00825 1.46509 1.20367 0.83484 0.85347 0.79249 1.90738 1.70347 1.15848 1.65832 1.21773 0.93800 0.96841 0.98882 1.23236 0.97531 1.01404 0.94437 1.23941 0.93086 1.04425 0.81866 1.88911 1.55768 1.66659 1.19781 1.22962 0.87071 0.95986 0.94799 1.22022 1.06433 0.91506 0.95330 1.21276 0.78121 0.86731 0.84942 1.90731 1.59710 1.17790 1.76719 0.94911 0.90340 0.93785 0.92197 0.73063 0.89516 0.85664 0.89247 0.86516 0.90386 0.91749 0.84261 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 9.07 71.98 0.65 -5.51 16 2 C 0.26 12.63 2.68 44.25 0.12 12.74 16 3 H 0.05 2.54 6.86 -2.39 -0.02 2.53 16 4 C -0.55 -28.37 8.56 25.60 0.22 -28.15 16 5 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.03 1.48 5.30 84.66 0.45 1.93 16 7 N -0.91 -49.09 11.32 21.45 0.24 -48.84 16 8 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 N -0.39 -15.67 3.23 -446.10 -1.44 -17.11 16 13 N -0.49 -17.40 5.85 -174.06 -1.02 -18.42 16 14 C 0.53 17.05 6.64 87.49 0.58 17.63 16 15 O -0.55 -19.95 16.42 -3.04 -0.05 -20.00 16 16 C -0.11 -2.78 0.66 -52.67 -0.03 -2.81 16 17 C -0.13 -2.36 6.18 31.74 0.20 -2.16 16 18 C 0.04 0.72 7.73 72.71 0.56 1.28 16 19 O -0.39 -10.54 11.53 -148.98 -1.72 -12.25 16 20 C 0.07 1.99 6.78 72.17 0.49 2.48 16 21 C -0.11 -2.68 4.68 29.73 0.14 -2.54 16 22 C 0.50 18.40 7.28 87.74 0.64 19.03 16 23 O -0.57 -25.57 16.38 -3.03 -0.05 -25.62 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 3.87 6.07 -2.39 -0.01 3.85 16 26 H 0.04 1.77 7.18 -2.38 -0.02 1.75 16 27 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.43 14.86 7.83 -213.39 -1.67 13.19 16 29 H 0.09 1.93 6.80 -2.38 -0.02 1.91 16 30 H 0.13 1.40 7.72 -2.39 -0.02 1.38 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.08 2.18 7.55 -2.39 -0.02 2.16 16 34 H 0.06 2.16 7.68 -2.39 -0.02 2.15 16 35 H 0.14 2.43 7.97 -2.38 -0.02 2.41 16 36 H 0.14 2.63 7.96 -2.39 -0.02 2.62 16 Total: -1.00 -65.54 295.31 1.45 -64.09 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.56 Total: 20.15 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 4.01 Total: 13.93 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.22 Total: -84.37 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -1.82 Total: -57.87 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -65.54 1.45 -64.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335837708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.755 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds