Wall clock time and date at job start Mon Mar 30 2020 19:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35903 * 117.00191 * 2 1 4 4 C 1.38727 * 120.05899 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94239 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.05964 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94834 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46909 * 7.63585 * 7 6 5 9 9 C 1.50693 * 109.47439 * 127.64076 * 7 6 5 10 10 H 1.08006 * 120.00191 * 35.18635 * 9 7 6 11 11 C 1.37876 * 120.00018 * 215.18537 * 9 7 6 12 12 N 1.31513 * 120.00019 * 354.15976 * 11 9 7 13 13 Si 1.86800 * 120.00131 * 174.16064 * 11 9 7 14 14 H 1.48504 * 109.47390 * 60.00008 * 13 11 9 15 15 H 1.48499 * 109.47561 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47178 * 300.00212 * 13 11 9 17 17 C 1.50699 * 109.46745 * 247.63951 * 7 6 5 18 18 C 1.38238 * 120.00344 * 292.52226 * 17 7 6 19 19 C 1.38232 * 119.99861 * 179.78985 * 18 17 7 20 20 C 1.38228 * 120.00402 * 0.44145 * 19 18 17 21 21 C 1.38240 * 120.00029 * 359.81650 * 20 19 18 22 22 C 1.38235 * 119.99748 * 359.97028 * 21 20 19 23 23 C 1.38269 * 120.11156 * 0.02562 * 6 5 4 24 24 C 1.38150 * 120.05404 * 359.97438 * 23 6 5 25 25 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47458 * 299.99514 * 1 2 3 27 27 H 1.08994 * 109.47408 * 60.00064 * 1 2 3 28 28 H 1.07998 * 120.02842 * 359.95661 * 4 3 2 29 29 H 1.08004 * 119.96838 * 179.72458 * 5 4 3 30 30 H 0.96999 * 119.99794 * 179.97438 * 12 11 9 31 31 H 1.07997 * 119.99569 * 359.97438 * 18 17 7 32 32 H 1.08005 * 119.99549 * 180.27500 * 19 18 17 33 33 H 1.08003 * 120.00403 * 179.83390 * 20 19 18 34 34 H 1.07998 * 120.00027 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.00244 * 180.02562 * 22 21 20 36 36 H 1.08003 * 119.97377 * 180.02562 * 23 6 5 37 37 H 1.07993 * 120.02446 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0559 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0583 4.8799 -0.1396 9 6 3.4405 5.8593 -1.1282 10 1 2.3989 5.7829 -1.4036 11 6 4.2710 6.7261 -1.8063 12 7 5.5086 6.9049 -1.3989 13 14 3.6384 7.6466 -3.3036 14 1 2.4807 8.4908 -2.9132 15 1 4.7185 8.5081 -3.8480 16 1 3.2131 6.6723 -4.3405 17 6 3.7327 5.7124 1.3108 18 6 2.4572 6.1358 1.6344 19 6 2.2242 6.7683 2.8412 20 6 3.2684 6.9856 3.7206 21 6 4.5449 6.5669 3.3948 22 6 4.7771 5.9305 2.1899 23 6 1.9209 3.6048 -0.0011 24 6 1.2914 2.3751 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 4.0208 0.3800 -0.0002 29 1 5.1344 2.5751 0.0030 30 1 6.0930 7.5144 -1.8763 31 1 1.6422 5.9698 0.9455 32 1 1.2268 7.0952 3.0959 33 1 3.0868 7.4822 4.6624 34 1 5.3608 6.7370 4.0817 35 1 5.7743 5.6030 1.9355 36 1 1.3340 4.5114 -0.0019 37 1 0.2128 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000616652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:21 Heat of formation + Delta-G solvation = 5.133960 kcal Electronic energy + Delta-G solvation = -19661.387758 eV Core-core repulsion = 16754.496962 eV Total energy + Delta-G solvation = -2906.890797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69333 -38.48293 -36.94369 -33.76441 -31.47672 -30.54360 -29.94380 -29.18540 -27.36084 -26.05045 -23.59252 -22.19217 -21.42683 -21.10322 -19.65126 -17.71608 -16.52282 -16.04759 -15.56992 -15.44359 -14.91867 -14.46280 -14.22433 -13.93580 -13.43576 -13.22152 -12.98520 -12.64123 -12.38898 -12.07368 -11.93485 -11.69691 -11.63583 -11.23987 -10.95601 -10.75436 -10.63455 -10.48924 -10.16678 -9.91813 -9.70498 -9.22608 -8.58235 -8.36987 -8.03991 -7.63684 -7.37431 -6.13395 -4.17238 1.97303 2.11516 2.29586 2.37294 3.27382 3.32068 3.34681 3.61075 4.32698 4.47811 4.74545 5.15019 5.23533 5.26374 5.35758 5.45365 5.54705 5.66318 5.73688 5.82361 5.85658 6.04046 6.14862 6.19013 6.31837 6.43626 6.54477 6.60453 6.82919 6.91397 6.99345 7.11974 7.16259 7.30920 7.37447 7.45096 7.59691 7.72302 7.85889 7.89076 7.98154 8.26022 8.86791 9.46192 10.94619 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.007240 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.282404 B = 3866.575624 C = 5068.314872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.093 3.907 4 C -0.152 4.152 5 C -0.091 4.091 6 C -0.060 4.060 7 C 0.099 3.901 8 H 0.073 0.927 9 C -0.506 4.506 10 H 0.060 0.940 11 C 0.069 3.931 12 N -0.882 5.882 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.016 4.016 18 C -0.112 4.112 19 C -0.132 4.132 20 C -0.153 4.153 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.075 4.075 24 C -0.209 4.209 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.264 0.736 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -7.030 5.256 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.050 3.950 4 C -0.171 4.171 5 C -0.109 4.109 6 C -0.060 4.060 7 C 0.080 3.920 8 H 0.091 0.909 9 C -0.544 4.544 10 H 0.078 0.922 11 C -0.135 4.135 12 N -0.519 5.519 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.017 4.017 18 C -0.130 4.130 19 C -0.150 4.150 20 C -0.172 4.172 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.093 4.093 24 C -0.227 4.227 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.044 -7.110 5.204 10.685 hybrid contribution -0.552 0.894 -0.877 1.368 sum -6.596 -6.217 4.327 10.044 Atomic orbital electron populations 1.22915 0.79402 1.02976 1.01121 1.85991 1.20587 1.27753 1.89747 1.18873 0.92302 0.83602 1.00269 1.20281 0.91111 0.98244 1.07461 1.20933 0.99759 0.91052 0.99160 1.20409 0.93364 0.96373 0.95880 1.17114 0.98265 0.86962 0.89646 0.90924 1.20916 0.96069 1.22382 1.15003 0.92203 1.24972 0.94926 0.96331 0.97229 1.69918 1.06203 1.36135 1.39608 0.86645 0.78564 0.79726 0.83094 1.20123 1.21192 1.20067 1.20585 0.91997 0.94473 0.94605 1.21020 0.97541 0.98800 0.95640 1.20979 0.98065 1.00750 0.95238 1.20798 0.93536 1.03363 0.99470 1.20964 0.96310 1.00104 0.97240 1.21061 0.99056 1.00145 0.93585 1.20946 0.94880 0.96254 0.97257 1.21143 0.99126 0.92707 1.09763 0.89007 0.93082 0.93026 0.86279 0.85872 0.92619 0.86684 0.87634 0.87761 0.87582 0.86891 0.85813 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.33 -5.08 10.50 -19.43 -0.20 -5.28 16 3 C 0.09 1.62 6.69 -39.22 -0.26 1.36 16 4 C -0.15 -2.69 9.99 -39.44 -0.39 -3.08 16 5 C -0.09 -1.74 9.66 -39.61 -0.38 -2.13 16 6 C -0.06 -1.26 4.77 -104.60 -0.50 -1.75 16 7 C 0.10 2.32 2.26 -94.08 -0.21 2.11 16 8 H 0.07 1.86 6.89 -51.93 -0.36 1.51 16 9 C -0.51 -13.02 7.29 -34.44 -0.25 -13.27 16 10 H 0.06 1.51 6.90 -52.48 -0.36 1.15 16 11 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 12 N -0.88 -24.40 12.85 55.43 0.71 -23.69 16 13 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.02 -0.36 4.77 -104.62 -0.50 -0.85 16 18 C -0.11 -2.31 8.38 -39.58 -0.33 -2.64 16 19 C -0.13 -2.42 10.05 -39.59 -0.40 -2.82 16 20 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 21 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 22 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 23 C -0.08 -1.46 8.18 -39.60 -0.32 -1.78 16 24 C -0.21 -3.59 9.04 -39.43 -0.36 -3.94 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.12 2.20 7.96 -52.48 -0.42 1.78 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.12 2.30 5.69 -52.49 -0.30 2.00 16 32 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.11 2.33 7.96 -52.49 -0.42 1.91 16 36 H 0.12 2.35 5.28 -52.48 -0.28 2.07 16 37 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -28.66 311.28 -8.52 -37.18 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.51 Total: 5.88 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -4.19 Total: -34.53 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.71 Total: -23.69 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.20 Total: -5.28 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.66 -8.52 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000616652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.314 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds