Wall clock time and date at job start Mon Mar 30 2020 19:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34495 * 126.47301 * 2 1 4 4 N 1.30851 * 109.16554 * 180.29672 * 3 2 1 5 5 C 1.33318 * 109.68347 * 359.72725 * 4 3 2 6 6 C 1.36660 * 107.78833 * 359.97438 * 5 4 3 7 7 C 1.46765 * 126.84937 * 179.97438 * 6 5 4 8 8 O 1.21669 * 120.00499 * 184.90891 * 7 6 5 9 9 N 1.34786 * 119.99413 * 4.90900 * 7 6 5 10 10 C 1.46502 * 119.99658 * 174.54442 * 9 7 6 11 11 C 1.52999 * 109.47163 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46908 * 305.00090 * 11 10 9 13 13 O 1.42894 * 109.47043 * 64.99866 * 11 10 9 14 14 C 1.53003 * 109.46993 * 185.00039 * 11 10 9 15 15 N 1.46501 * 109.46927 * 179.97438 * 14 11 10 16 16 C 1.36937 * 119.99958 * 180.02562 * 15 14 11 17 17 H 1.07994 * 119.99860 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99898 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99998 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99947 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47204 * 90.00379 * 20 18 16 22 22 H 1.48505 * 109.47090 * 210.00247 * 20 18 16 23 23 H 1.48499 * 109.47492 * 329.99534 * 20 18 16 24 24 H 1.09000 * 109.47225 * 272.03978 * 1 2 3 25 25 H 1.09001 * 109.47672 * 32.04130 * 1 2 3 26 26 H 1.09001 * 109.47393 * 152.04302 * 1 2 3 27 27 H 1.08008 * 125.41535 * 0.02562 * 3 2 1 28 28 H 1.08003 * 126.10451 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00346 * 354.54601 * 9 7 6 30 30 H 1.09002 * 109.46970 * 59.99521 * 10 9 7 31 31 H 1.09005 * 109.46960 * 300.00315 * 10 9 7 32 32 H 0.96699 * 113.99914 * 60.00483 * 13 11 10 33 33 H 1.08994 * 109.46869 * 300.00102 * 14 11 10 34 34 H 1.09001 * 109.46776 * 59.99847 * 14 11 10 35 35 H 0.97001 * 119.99870 * 359.97438 * 15 14 11 36 36 H 0.97001 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5137 0.6923 -0.0064 5 6 3.5690 -0.6398 -0.0048 6 6 2.2862 -1.1109 0.0037 7 6 1.8648 -2.5167 0.0078 8 8 0.6840 -2.7983 -0.0748 9 7 2.7861 -3.4960 0.1030 10 6 2.3606 -4.8923 0.2276 11 6 3.5927 -5.7948 0.3185 12 1 4.2405 -5.6126 -0.5390 13 8 4.3054 -5.5078 1.5233 14 6 3.1524 -7.2601 0.3230 15 7 4.3323 -8.1242 0.4094 16 6 4.1841 -9.4854 0.4282 17 1 3.1974 -9.9219 0.3798 18 6 5.3020 -10.3042 0.5096 19 7 5.1596 -11.6125 0.5282 20 14 7.0086 -9.5492 0.5926 21 1 7.3802 -9.3205 2.0121 22 1 7.9893 -10.4722 -0.0332 23 1 7.0133 -8.2547 -0.1351 24 1 -0.3634 0.0366 1.0270 25 1 -0.3634 0.8711 -0.5452 26 1 -0.3634 -0.9077 -0.4818 27 1 1.9287 2.1081 0.0004 28 1 4.4672 -1.2395 -0.0093 29 1 3.7308 -3.2762 0.0891 30 1 1.7690 -5.1710 -0.6445 31 1 1.7576 -5.0094 1.1281 32 1 3.7890 -5.6482 2.3287 33 1 2.5046 -7.4421 1.1804 34 1 2.6087 -7.4788 -0.5961 35 1 5.2184 -7.7321 0.4525 36 1 5.9408 -12.1847 0.5854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568568607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:41 Heat of formation + Delta-G solvation = -8.184577 kcal Electronic energy + Delta-G solvation = -19782.513364 eV Core-core repulsion = 16496.488520 eV Total energy + Delta-G solvation = -3286.024844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.52434 -39.61229 -37.77996 -34.92518 -34.28681 -34.01704 -31.58489 -30.79031 -29.10053 -27.45296 -25.81979 -23.36128 -22.23300 -21.57293 -21.51828 -20.23933 -18.35895 -17.74742 -16.66551 -16.46022 -16.35215 -15.98110 -15.38023 -14.71501 -14.54990 -14.46353 -14.19056 -13.76645 -13.67046 -13.31308 -13.26518 -13.08818 -12.75429 -12.41588 -12.05500 -11.32288 -10.88766 -10.86439 -10.72023 -10.21791 -10.16370 -10.08047 -9.80814 -9.58362 -9.37945 -8.95481 -8.91620 -7.28202 -5.79546 -3.16087 0.99367 2.13334 2.52261 3.02744 3.09167 3.39110 3.43873 3.46436 4.18483 4.34380 4.43255 4.49521 4.58568 4.65034 4.74045 4.80299 5.04433 5.07082 5.18465 5.39931 5.48812 5.58469 5.74845 5.76243 5.79856 6.09719 6.18525 6.38037 6.50847 6.65814 7.21035 7.53934 7.73665 7.91572 7.96154 8.38959 9.18423 9.90277 10.09762 11.38444 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041474 B = 0.003316 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.956533 B = 8442.391198 C = 8999.390922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.428 5.428 3 C 0.204 3.796 4 N -0.497 5.497 5 C 0.039 3.961 6 C -0.086 4.086 7 C 0.593 3.407 8 O -0.549 6.549 9 N -0.707 5.707 10 C 0.093 3.907 11 C 0.084 3.916 12 H 0.106 0.894 13 O -0.556 6.556 14 C 0.131 3.869 15 N -0.749 5.749 16 C -0.249 4.249 17 H 0.090 0.910 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.888 3.112 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.276 1.276 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.213 0.787 28 H 0.180 0.820 29 H 0.407 0.593 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.377 0.623 33 H 0.032 0.968 34 H 0.038 0.962 35 H 0.367 0.633 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 25.960 -0.654 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.108 5.108 3 C -0.078 4.078 4 N -0.215 5.215 5 C -0.115 4.115 6 C -0.203 4.203 7 C 0.380 3.620 8 O -0.428 6.428 9 N -0.359 5.359 10 C -0.031 4.031 11 C 0.025 3.975 12 H 0.124 0.876 13 O -0.361 6.361 14 C 0.003 3.997 15 N -0.396 5.396 16 C -0.379 4.379 17 H 0.107 0.893 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.719 3.281 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.202 1.202 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.229 0.771 28 H 0.197 0.803 29 H 0.243 0.757 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.224 0.776 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.200 0.800 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.221 26.161 -1.125 27.445 hybrid contribution 0.443 -0.118 0.420 0.622 sum -7.779 26.043 -0.705 27.189 Atomic orbital electron populations 1.22332 0.75211 1.05940 1.04288 1.45274 1.08373 1.05781 1.51409 1.25171 0.85592 0.93656 1.03425 1.70166 1.19015 1.12161 1.20155 1.22707 0.95279 0.91346 1.02176 1.20790 0.91572 0.88919 1.19048 1.16760 0.85564 0.83162 0.76526 1.90782 1.17007 1.84000 1.51004 1.45555 1.09907 1.06392 1.74008 1.22147 0.97999 0.79482 1.03453 1.22458 0.92217 0.94100 0.88765 0.87622 1.86552 1.43568 1.90365 1.15621 1.21161 0.91220 0.87575 0.99764 1.42558 1.02860 1.03400 1.90758 1.19034 0.95179 0.80287 1.43383 0.89266 1.24681 0.97534 0.95111 1.01711 1.69711 1.29218 1.02061 1.57075 0.86489 0.85440 0.78256 0.77964 1.20977 1.21792 1.20234 0.90128 0.89365 0.87442 0.77092 0.80306 0.75696 0.89871 0.90642 0.77552 0.94993 0.94454 0.79977 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.78 59.84 0.65 1.05 16 2 N -0.43 -3.87 3.17 -121.98 -0.39 -4.26 16 3 C 0.20 1.68 12.52 -90.58 -1.13 0.54 16 4 N -0.50 -5.42 11.20 -14.43 -0.16 -5.58 16 5 C 0.04 0.41 11.37 -17.48 -0.20 0.21 16 6 C -0.09 -0.94 6.91 -82.14 -0.57 -1.51 16 7 C 0.59 7.17 7.78 -12.81 -0.10 7.07 16 8 O -0.55 -8.00 14.83 5.22 0.08 -7.93 16 9 N -0.71 -7.51 5.49 -61.59 -0.34 -7.84 16 10 C 0.09 1.07 5.32 -4.04 -0.02 1.05 16 11 C 0.08 1.13 3.09 -26.73 -0.08 1.05 16 12 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 13 O -0.56 -7.64 13.03 -35.23 -0.46 -8.10 16 14 C 0.13 2.32 5.92 -4.04 -0.02 2.30 16 15 N -0.75 -17.42 5.30 -59.91 -0.32 -17.74 16 16 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 20 Si 0.89 22.27 27.73 -169.99 -4.71 17.55 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.11 0.91 6.31 -51.93 -0.33 0.58 16 27 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 28 H 0.18 1.42 7.46 -52.48 -0.39 1.03 16 29 H 0.41 3.69 7.42 -40.82 -0.30 3.38 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.38 4.23 9.05 45.56 0.41 4.64 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.37 8.50 5.41 -40.82 -0.22 8.28 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -36.27 312.19 -6.36 -42.63 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -3.80 Total: 10.42 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.74 Total: 4.67 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.43 Total: -63.95 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.38 Total: -16.03 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.27 -6.36 -42.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568568607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.450 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds