Wall clock time and date at job start Mon Mar 30 2020 19:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99546 * 2 1 4 4 C 1.52998 * 109.47044 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59519 * 125.00442 * 5 4 3 7 7 C 1.36597 * 106.83727 * 180.24451 * 6 5 4 8 8 C 1.47527 * 125.76547 * 179.71308 * 7 6 5 9 9 O 1.21593 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99610 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00232 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47474 * 180.02562 * 11 10 8 13 13 C 1.50708 * 109.47080 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99676 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99773 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00417 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99732 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47436 * 90.00189 * 17 15 13 19 19 H 1.48504 * 109.47134 * 210.00164 * 17 15 13 20 20 H 1.48500 * 109.47305 * 329.99913 * 17 15 13 21 21 N 1.34396 * 108.45930 * 359.56394 * 7 6 5 22 22 N 1.28759 * 109.52721 * 0.44454 * 21 7 6 23 23 H 1.08998 * 109.46471 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47562 * 299.99953 * 1 2 3 25 25 H 1.08997 * 109.46866 * 60.00803 * 1 2 3 26 26 H 1.09005 * 109.46925 * 60.00043 * 3 2 1 27 27 H 1.08997 * 109.47055 * 299.99659 * 3 2 1 28 28 H 1.09003 * 109.47199 * 59.99988 * 4 3 2 29 29 H 1.09007 * 109.47292 * 299.99936 * 4 3 2 30 30 H 1.08002 * 126.57680 * 359.97185 * 6 5 4 31 31 H 0.97003 * 120.00203 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.46702 * 300.00219 * 11 10 8 33 33 H 1.08996 * 109.47356 * 59.99751 * 11 10 8 34 34 H 1.08992 * 109.46977 * 299.99709 * 12 11 10 35 35 H 1.08997 * 109.47082 * 60.00406 * 12 11 10 36 36 H 0.96993 * 120.00236 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1312 2.5232 0.0013 6 6 5.0249 3.0047 0.8884 7 6 5.3017 4.2888 0.5138 8 6 6.2276 5.2075 1.2032 9 8 6.8219 4.8386 2.1978 10 7 6.4147 6.4556 0.7304 11 6 7.3346 7.3678 1.4145 12 6 7.3627 8.7096 0.6798 13 6 8.3085 9.6482 1.3840 14 1 8.8370 9.3202 2.2669 15 6 8.4998 10.9250 0.9004 16 7 7.8566 11.3242 -0.1750 17 14 9.6727 12.0881 1.7728 18 1 11.0358 11.9356 1.2036 19 1 9.2121 13.4875 1.5862 20 1 9.7026 11.7659 3.2221 21 7 4.5905 4.5726 -0.5906 22 7 3.8820 3.5495 -0.9210 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8574 0.6438 -0.8891 29 1 3.8567 0.6441 0.8909 30 1 5.4388 2.4778 1.7355 31 1 5.9409 6.7498 -0.0633 32 1 6.9977 7.5222 2.4396 33 1 8.3355 6.9363 1.4221 34 1 7.6993 8.5555 -0.3453 35 1 6.3617 9.1409 0.6727 36 1 7.9915 12.2224 -0.5154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584803621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:15 Heat of formation + Delta-G solvation = 6.358660 kcal Electronic energy + Delta-G solvation = -19121.032589 eV Core-core repulsion = 15835.638387 eV Total energy + Delta-G solvation = -3285.394202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.32271 -38.95789 -38.54217 -35.20583 -34.84304 -32.80023 -31.31576 -30.46136 -29.25510 -26.97279 -25.10239 -24.42070 -23.13806 -21.98865 -20.93104 -20.12274 -18.17614 -17.06265 -16.88428 -16.39474 -16.17820 -15.80277 -15.40625 -15.27138 -14.70070 -14.56170 -14.43847 -14.10358 -13.34235 -13.04371 -12.74170 -12.50716 -12.26722 -12.12118 -11.92767 -11.33688 -11.16756 -11.00940 -10.61430 -10.60408 -10.32385 -10.29837 -9.97239 -9.51113 -9.39466 -9.21323 -8.51104 -8.31502 -6.04668 -4.07723 0.97266 1.65381 1.75326 3.16917 3.32514 3.38364 3.41941 3.54744 3.57848 4.04130 4.18341 4.25410 4.44995 4.58387 4.71868 4.75762 4.79775 4.88090 4.97772 5.04070 5.14863 5.27447 5.32060 5.73798 6.09930 6.36572 6.37629 6.43579 6.76340 6.90710 7.56578 7.67497 7.76565 7.93576 8.07484 8.31160 8.59224 8.98278 9.56713 11.06898 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.054767 B = 0.002639 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.129976 B =10609.231844 C =10895.249368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.127 3.873 5 N -0.366 5.366 6 C 0.094 3.906 7 C -0.091 4.091 8 C 0.593 3.407 9 O -0.550 6.550 10 N -0.703 5.703 11 C 0.121 3.879 12 C 0.011 3.989 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 N -0.198 5.198 22 N -0.068 5.068 23 H 0.091 0.909 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.206 0.794 31 H 0.406 0.594 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 -22.986 -0.048 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.153 5.153 6 C -0.062 4.062 7 C -0.231 4.231 8 C 0.376 3.624 9 O -0.428 6.428 10 N -0.352 5.352 11 C -0.001 4.001 12 C -0.026 4.026 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 N -0.072 5.072 22 N -0.048 5.048 23 H 0.110 0.890 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.223 0.777 31 H 0.241 0.759 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.544 -22.864 -0.702 26.583 hybrid contribution 0.606 0.626 0.841 1.211 sum -12.938 -22.238 0.139 25.728 Atomic orbital electron populations 1.22807 0.79650 1.03254 1.00584 1.87776 1.20809 1.26530 1.95645 1.22637 0.91962 0.85727 1.02514 1.21652 0.93128 0.78180 1.06520 1.50277 1.30824 1.13478 1.20685 1.23393 0.92213 0.94948 0.95684 1.21739 1.07054 0.95577 0.98681 1.16794 0.80564 0.81652 0.83383 1.90779 1.49546 1.76565 1.25874 1.46178 1.45456 1.12296 1.31227 1.21810 0.91249 0.90542 0.96455 1.19342 0.98124 0.89101 0.96077 1.21042 1.25409 0.97321 1.12207 0.92204 1.25005 0.96108 0.98209 0.95049 1.69960 1.42033 1.18767 1.22414 0.86510 0.80988 0.79963 0.80054 1.20595 1.21216 1.19750 1.74681 1.03713 1.18717 1.10090 1.81987 1.20405 0.90593 1.11823 0.89037 0.93658 0.93522 0.92248 0.91175 0.87415 0.86774 0.77700 0.75895 0.92227 0.92219 0.95762 0.95765 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.72 10.70 -35.23 -0.38 -3.09 16 3 C 0.05 0.32 6.14 37.16 0.23 0.55 16 4 C 0.13 0.77 6.91 -4.05 -0.03 0.74 16 5 N -0.37 -3.63 3.69 -61.06 -0.23 -3.86 16 6 C 0.09 1.02 11.27 -16.83 -0.19 0.83 16 7 C -0.09 -1.35 6.99 -83.55 -0.58 -1.94 16 8 C 0.59 10.63 7.82 -12.48 -0.10 10.53 16 9 O -0.55 -11.02 16.86 5.28 0.09 -10.93 16 10 N -0.70 -13.29 5.55 -61.35 -0.34 -13.63 16 11 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 17 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 N -0.20 -3.04 12.04 32.85 0.40 -2.65 16 22 N -0.07 -0.91 13.65 60.35 0.82 -0.08 16 23 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.11 0.42 8.08 -51.92 -0.42 0.00 16 30 H 0.21 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.41 7.28 8.16 -40.82 -0.33 6.94 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -33.63 323.82 -4.12 -37.75 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.94 Total: -0.56 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.13 Total: 1.38 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 1.39 Total: -45.98 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.29 Total: -14.02 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.63 -4.12 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584803621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.110 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds