Wall clock time and date at job start Mon Mar 30 2020 19:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38223 * 120.41484 * 2 1 4 4 N 1.31866 * 120.75910 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.72616 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76535 * 359.97438 * 5 4 3 7 7 C 1.38630 * 120.41791 * 180.02562 * 2 1 3 8 8 C 1.50695 * 120.79375 * 359.97438 * 7 2 1 9 9 N 1.46499 * 109.46961 * 79.97875 * 8 7 2 10 10 C 1.39691 * 119.99910 * 180.02562 * 9 8 7 11 11 C 1.39337 * 119.94756 * 359.72624 * 10 9 8 12 12 C 1.38483 * 120.41754 * 179.72155 * 11 10 9 13 13 C 1.37694 * 120.32644 * 0.55441 * 12 11 10 14 14 C 1.40750 * 119.88951 * 359.72374 * 13 12 11 15 15 C 1.41406 * 120.20391 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00189 * 150.19667 * 15 14 13 17 17 C 1.39928 * 120.00106 * 330.19274 * 15 14 13 18 18 N 1.30835 * 120.00117 * 161.72849 * 17 15 14 19 19 Si 1.86795 * 120.00109 * 341.72988 * 17 15 14 20 20 H 1.48504 * 109.47088 * 95.41100 * 19 17 15 21 21 H 1.48502 * 109.47363 * 215.41135 * 19 17 15 22 22 H 1.48499 * 109.47473 * 335.41594 * 19 17 15 23 23 C 1.38272 * 119.95126 * 180.02562 * 10 9 8 24 24 H 1.09002 * 109.47367 * 269.97564 * 1 2 3 25 25 H 1.08992 * 109.47269 * 29.98101 * 1 2 3 26 26 H 1.09009 * 109.47097 * 149.97718 * 1 2 3 27 27 H 1.07992 * 119.62184 * 0.04405 * 3 2 1 28 28 H 1.07995 * 119.61639 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.41709 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47119 * 199.98090 * 8 7 2 31 31 H 1.09004 * 109.47280 * 319.98272 * 8 7 2 32 32 H 0.97002 * 120.00179 * 0.02562 * 9 8 7 33 33 H 1.07998 * 119.79172 * 0.02562 * 11 10 9 34 34 H 1.07997 * 119.83281 * 180.27771 * 12 11 10 35 35 H 1.07993 * 120.05096 * 179.74700 * 13 12 11 36 36 H 0.96999 * 120.00135 * 179.97438 * 18 17 15 37 37 H 1.08012 * 120.16066 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0016 7 6 2.2089 -1.1955 -0.0005 8 6 1.4832 -2.5162 -0.0005 9 7 1.0369 -2.8281 -1.3606 10 6 0.3360 -4.0100 -1.6119 11 6 0.0670 -4.8943 -0.5692 12 6 -0.6321 -6.0660 -0.8062 13 6 -1.0593 -6.3755 -2.0781 14 6 -0.7898 -5.4946 -3.1423 15 6 -1.2259 -5.8056 -4.4510 16 1 -1.4679 -5.0121 -5.1425 17 6 -1.3437 -7.1416 -4.8502 18 7 -2.0663 -7.4504 -5.8963 19 14 -0.4695 -8.4841 -3.8897 20 1 -1.4065 -9.0758 -2.9012 21 1 -0.0051 -9.5398 -4.8252 22 1 0.6982 -7.9040 -3.1790 23 6 -0.0843 -4.3037 -2.8960 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6674 2.1276 0.0007 28 1 5.3046 0.1286 -0.0023 29 1 4.1738 -2.0587 -0.0028 30 1 2.1548 -3.2998 0.3502 31 1 0.6187 -2.4558 0.6606 32 1 1.2280 -2.2139 -2.0866 33 1 0.4015 -4.6620 0.4311 34 1 -0.8393 -6.7424 0.0098 35 1 -1.6005 -7.2924 -2.2586 36 1 -2.1478 -8.3765 -6.1733 37 1 0.1276 -3.6210 -3.7058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313478757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:20 Heat of formation + Delta-G solvation = 31.026441 kcal Electronic energy + Delta-G solvation = -19012.764224 eV Core-core repulsion = 16139.288960 eV Total energy + Delta-G solvation = -2873.475263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37221 -39.79470 -37.13871 -35.37993 -34.24368 -33.14220 -32.03721 -30.24775 -28.28909 -27.04950 -26.69187 -23.73376 -22.87983 -22.68605 -21.71535 -19.34444 -17.92272 -17.70924 -17.61222 -16.52863 -16.33855 -16.26132 -15.97819 -15.26120 -14.92839 -14.82611 -14.38570 -14.27608 -14.23944 -13.76368 -13.62960 -13.42056 -13.28122 -13.01484 -12.68273 -12.63121 -12.41493 -12.18526 -11.63162 -11.37247 -11.10129 -10.62290 -10.58095 -10.44139 -9.85813 -9.46514 -8.86497 -8.10386 -6.49131 0.13077 0.16419 0.87297 1.10364 1.30489 1.45324 1.54038 2.17721 2.58855 2.68396 2.99299 3.50473 3.60422 3.62080 3.80297 3.97259 4.04036 4.37690 4.50022 4.52197 4.56365 4.63426 4.73970 4.75743 4.77166 4.87530 5.00293 5.02343 5.10052 5.18420 5.24227 5.40562 5.54384 5.74349 5.76909 5.87731 6.00533 6.09743 6.39891 6.69322 6.82284 6.86982 6.98673 7.04805 8.22612 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034531 B = 0.003854 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.661454 B = 7263.571319 C = 7353.730563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C 0.085 3.915 4 N -0.503 5.503 5 C 0.080 3.920 6 C -0.152 4.152 7 C -0.069 4.069 8 C 0.175 3.825 9 N -0.743 5.743 10 C 0.246 3.754 11 C -0.288 4.288 12 C -0.047 4.047 13 C -0.293 4.293 14 C 0.108 3.892 15 C -0.491 4.491 16 H 0.050 0.950 17 C 0.048 3.952 18 N -0.855 5.855 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.254 1.254 23 C -0.295 4.295 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.152 0.848 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.395 0.605 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.292 0.708 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 10.832 14.303 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.123 4.123 3 C -0.072 4.072 4 N -0.212 5.212 5 C -0.076 4.076 6 C -0.172 4.172 7 C -0.077 4.077 8 C 0.051 3.949 9 N -0.375 5.375 10 C 0.144 3.856 11 C -0.310 4.310 12 C -0.066 4.066 13 C -0.313 4.313 14 C 0.105 3.895 15 C -0.521 4.521 16 H 0.069 0.931 17 C -0.166 4.166 18 N -0.482 5.482 19 Si 0.796 3.204 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.178 1.178 23 C -0.319 4.319 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.191 0.809 28 H 0.195 0.805 29 H 0.170 0.830 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.229 0.771 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.497 11.494 14.299 20.658 hybrid contribution -0.424 -1.138 -0.758 1.431 sum 9.073 10.356 13.541 19.311 Atomic orbital electron populations 1.20830 0.89210 1.03767 1.03500 1.21045 0.98408 0.93412 0.99459 1.23019 0.89809 0.98252 0.96072 1.67692 1.09012 1.32370 1.12127 1.23138 1.01526 0.87264 0.95684 1.22340 0.94289 1.00638 0.99926 1.20315 0.94279 0.94761 0.98370 1.20088 0.97839 0.92214 0.84733 1.44473 1.62916 1.21264 1.08846 1.17542 0.89495 0.85947 0.92618 1.20346 1.14478 0.98316 0.97887 1.20771 0.94421 0.95942 0.95439 1.20974 1.13305 1.02938 0.94132 1.17572 0.87710 0.91817 0.92438 1.19463 1.41215 0.93168 0.98248 0.93137 1.26824 0.92718 1.01643 0.95370 1.69741 1.31042 1.22218 1.25232 0.85398 0.80520 0.76632 0.77882 1.18405 1.20790 1.17758 1.20491 1.13570 1.02734 0.95140 0.89573 0.89843 0.91873 0.80922 0.80459 0.83032 0.91012 0.90882 0.77108 0.85460 0.85544 0.89107 0.89752 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.35 71.24 0.67 -1.34 16 2 C -0.12 -2.37 5.90 -19.77 -0.12 -2.48 16 3 C 0.09 1.66 10.86 84.68 0.92 2.58 16 4 N -0.50 -10.97 10.36 -195.85 -2.03 -13.00 16 5 C 0.08 1.48 11.18 84.67 0.95 2.43 16 6 C -0.15 -2.80 9.78 22.36 0.22 -2.58 16 7 C -0.07 -1.41 5.29 -19.67 -0.10 -1.52 16 8 C 0.17 3.98 4.21 85.63 0.36 4.34 16 9 N -0.74 -21.94 5.16 -343.30 -1.77 -23.71 16 10 C 0.25 9.49 6.64 38.16 0.25 9.75 16 11 C -0.29 -10.61 9.32 22.59 0.21 -10.40 16 12 C -0.05 -1.89 10.02 22.20 0.22 -1.67 16 13 C -0.29 -14.07 7.17 22.76 0.16 -13.90 16 14 C 0.11 5.65 5.10 -21.31 -0.11 5.54 16 15 C -0.49 -28.55 9.57 23.46 0.22 -28.32 16 16 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 17 C 0.05 2.67 5.40 85.25 0.46 3.13 16 18 N -0.86 -48.36 13.93 21.82 0.30 -48.06 16 19 Si 0.97 44.31 24.52 68.60 1.68 46.00 16 20 H -0.26 -11.12 6.71 99.48 0.67 -10.46 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.25 -11.81 6.86 99.48 0.68 -11.13 16 23 C -0.30 -13.83 9.63 22.85 0.22 -13.61 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 26 H 0.06 1.36 6.53 -2.38 -0.02 1.34 16 27 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.07 1.56 7.83 -2.39 -0.02 1.54 16 31 H 0.07 1.61 7.20 -2.39 -0.02 1.59 16 32 H 0.39 11.41 8.47 -92.71 -0.79 10.63 16 33 H 0.13 3.82 6.70 -2.91 -0.02 3.80 16 34 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 35 H 0.09 4.40 4.73 -2.91 -0.01 4.39 16 36 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 37 H 0.09 4.23 8.06 -2.90 -0.02 4.20 16 Total: -1.00 -64.45 308.41 2.96 -61.49 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.24 Total: 25.37 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 4.54 Total: -48.08 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -3.50 Total: -84.77 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.68 Total: 46.00 kcal Total: -64.45 2.96 -61.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313478757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.513 kcal (2) G-P(sol) polarization free energy of solvation -64.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds