Wall clock time and date at job start Mon Mar 30 2020 19:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38221 * 120.41581 * 2 1 4 4 N 1.31864 * 120.75920 * 179.97438 * 3 2 1 5 5 C 1.31887 * 121.72572 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76463 * 0.02562 * 5 4 3 7 7 C 1.38629 * 120.41919 * 179.97438 * 2 1 3 8 8 C 1.50708 * 120.78832 * 0.04415 * 7 2 1 9 9 N 1.46497 * 109.47281 * 79.97547 * 8 7 2 10 10 C 1.38857 * 119.99921 * 179.97438 * 9 8 7 11 11 C 1.39568 * 119.84142 * 359.73004 * 10 9 8 12 12 C 1.36340 * 120.15918 * 179.71750 * 11 10 9 13 13 C 1.40884 * 119.83579 * 0.55319 * 12 11 10 14 14 C 1.41138 * 120.15478 * 179.69898 * 13 12 11 15 15 H 1.08004 * 119.99866 * 204.62679 * 14 13 12 16 16 C 1.39863 * 119.99916 * 24.62941 * 14 13 12 17 17 N 1.30896 * 120.00160 * 17.95287 * 16 14 13 18 18 Si 1.86806 * 119.99988 * 197.95658 * 16 14 13 19 19 H 1.48498 * 109.47021 * 89.99665 * 18 16 14 20 20 H 1.48501 * 109.47106 * 210.00186 * 18 16 14 21 21 H 1.48502 * 109.46795 * 330.00136 * 18 16 14 22 22 C 1.40888 * 119.68883 * 359.71803 * 13 12 11 23 23 C 1.36338 * 119.83645 * 0.02562 * 22 13 12 24 24 H 1.09002 * 109.46391 * 270.02099 * 1 2 3 25 25 H 1.08990 * 109.47069 * 30.01733 * 1 2 3 26 26 H 1.08991 * 109.47197 * 150.02294 * 1 2 3 27 27 H 1.07995 * 119.62368 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.61583 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.42053 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.46892 * 199.97618 * 8 7 2 31 31 H 1.08997 * 109.46799 * 319.97192 * 8 7 2 32 32 H 0.96999 * 119.99993 * 359.97438 * 9 8 7 33 33 H 1.08004 * 119.92094 * 359.97438 * 11 10 9 34 34 H 1.07996 * 120.08033 * 180.26986 * 12 11 10 35 35 H 0.97006 * 120.00183 * 180.02562 * 17 16 14 36 36 H 1.07996 * 120.07898 * 179.97438 * 22 13 12 37 37 H 1.07996 * 119.91697 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1471 -0.0005 7 6 2.2090 -1.1955 0.0005 8 6 1.4831 -2.5162 0.0001 9 7 1.0381 -2.8285 -1.3602 10 6 0.3425 -4.0039 -1.6105 11 6 0.0741 -4.8882 -0.5646 12 6 -0.6134 -6.0414 -0.8020 13 6 -1.0429 -6.3450 -2.1090 14 6 -1.7495 -7.5399 -2.3635 15 1 -1.7358 -7.9754 -3.3517 16 6 -2.4676 -8.1601 -1.3359 17 7 -2.7831 -7.4863 -0.2589 18 14 -2.9764 -9.9500 -1.5003 19 1 -1.9100 -10.8208 -0.9440 20 1 -4.2400 -10.1760 -0.7537 21 1 -3.1837 -10.2758 -2.9343 22 6 -0.7633 -5.4503 -3.1609 23 6 -0.0795 -4.2983 -2.9079 24 1 -0.3632 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8901 -0.5134 27 1 1.6675 2.1276 -0.0004 28 1 5.3047 0.1285 0.0005 29 1 4.1738 -2.0588 -0.0009 30 1 2.1544 -3.2998 0.3517 31 1 0.6181 -2.4555 0.6605 32 1 1.2294 -2.2142 -2.0861 33 1 0.4081 -4.6564 0.4360 34 1 -0.8243 -6.7226 0.0090 35 1 -3.2808 -7.9166 0.4540 36 1 -1.0892 -5.6770 -4.1652 37 1 0.1359 -3.6118 -3.7132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384909810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:48 Heat of formation + Delta-G solvation = 50.745608 kcal Electronic energy + Delta-G solvation = -18920.691180 eV Core-core repulsion = 16048.071004 eV Total energy + Delta-G solvation = -2872.620176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44617 -37.98936 -35.66300 -33.78601 -32.77910 -31.90182 -29.50087 -28.88619 -27.47453 -26.16522 -23.99466 -22.81032 -21.78348 -20.86125 -19.94198 -17.23508 -16.90728 -16.75515 -15.84991 -15.16301 -15.09760 -14.78520 -14.18996 -13.81056 -13.72883 -13.32672 -12.91189 -12.79687 -12.66008 -12.36551 -12.24022 -11.85016 -11.69733 -11.56781 -11.24069 -11.06196 -10.84216 -10.49698 -9.77730 -9.66609 -9.54857 -9.29787 -9.26727 -8.99780 -8.58826 -7.53171 -6.67601 -6.44220 -4.06785 1.01253 1.09190 2.88945 3.06813 3.13836 3.17210 3.32611 3.63318 4.03490 4.33605 4.38826 4.62255 4.67760 4.74131 4.85618 4.91595 5.34549 5.52081 5.52981 5.60280 5.68981 5.80140 5.87971 5.89706 6.13433 6.23314 6.27982 6.36100 6.61244 6.86343 6.90447 7.16819 7.32633 7.50282 7.65320 7.79807 7.84756 8.12174 8.24269 8.43901 8.63672 8.75602 9.03223 9.11579 10.34463 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043288 B = 0.003449 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.674052 B = 8115.184263 C = 8167.982403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C 0.091 3.909 4 N -0.484 5.484 5 C 0.085 3.915 6 C -0.152 4.152 7 C -0.053 4.053 8 C 0.177 3.823 9 N -0.755 5.755 10 C 0.089 3.911 11 C -0.163 4.163 12 C -0.125 4.125 13 C 0.076 3.924 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.807 5.807 18 Si 0.903 3.097 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.187 4.187 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.385 0.615 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.276 0.724 36 H 0.092 0.908 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 11.143 2.734 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.120 4.120 3 C -0.066 4.066 4 N -0.193 5.193 5 C -0.072 4.072 6 C -0.173 4.173 7 C -0.062 4.062 8 C 0.052 3.948 9 N -0.392 5.392 10 C -0.008 4.008 11 C -0.185 4.185 12 C -0.145 4.145 13 C 0.073 3.927 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.434 5.434 18 Si 0.728 3.272 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.207 4.207 23 C -0.178 4.178 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.171 0.829 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.217 0.783 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.901 11.856 3.148 14.591 hybrid contribution -0.624 -1.374 -0.215 1.524 sum 7.277 10.482 2.933 13.093 Atomic orbital electron populations 1.20848 0.89902 1.04055 1.02869 1.20915 0.97897 0.93446 0.99779 1.22657 0.89901 0.97390 0.96634 1.67641 1.08380 1.31526 1.11740 1.22697 1.00248 0.87675 0.96549 1.22136 0.94591 0.99796 1.00749 1.20435 0.93773 0.95481 0.96492 1.19895 0.97050 0.90698 0.87173 1.43768 1.65943 1.23096 1.06357 1.17308 1.01310 0.88382 0.93754 1.20086 1.05691 0.96973 0.95712 1.20931 0.98814 0.96614 0.98135 1.17504 0.91674 0.92369 0.91139 1.19390 1.26908 1.06690 0.96820 0.90898 1.25796 0.94278 0.99274 0.94694 1.69851 1.30016 1.36520 1.06994 0.86399 0.78248 0.83144 0.79361 1.19528 1.20569 1.18848 1.20546 1.06386 0.95374 0.98421 1.19796 1.05441 0.99018 0.93500 0.90822 0.91315 0.89748 0.82938 0.82875 0.84627 0.92377 0.91995 0.78264 0.89439 0.86371 0.91295 0.89026 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.35 36.01 0.34 -0.94 16 2 C -0.12 -1.39 5.90 -104.48 -0.62 -2.00 16 3 C 0.09 1.04 10.86 -17.54 -0.19 0.85 16 4 N -0.48 -6.02 10.36 -13.25 -0.14 -6.16 16 5 C 0.08 0.93 11.18 -17.55 -0.20 0.74 16 6 C -0.15 -1.72 9.78 -39.45 -0.39 -2.11 16 7 C -0.05 -0.67 5.29 -104.31 -0.55 -1.22 16 8 C 0.18 2.54 4.19 -5.19 -0.02 2.52 16 9 N -0.76 -12.60 5.13 -59.67 -0.31 -12.90 16 10 C 0.09 1.87 6.67 -83.69 -0.56 1.31 16 11 C -0.16 -3.70 9.23 -39.77 -0.37 -4.07 16 12 C -0.12 -3.22 8.64 -39.26 -0.34 -3.56 16 13 C 0.08 2.03 5.57 -106.79 -0.60 1.43 16 14 C -0.47 -12.57 9.03 -37.87 -0.34 -12.91 16 15 H 0.07 1.90 7.91 -52.48 -0.41 1.49 16 16 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 17 N -0.81 -21.15 10.96 55.54 0.61 -20.55 16 18 Si 0.90 19.06 29.60 -169.99 -5.03 14.03 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.19 -4.57 9.74 -39.26 -0.38 -4.95 16 23 C -0.16 -3.42 9.82 -39.77 -0.39 -3.81 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 27 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.06 0.84 7.82 -51.93 -0.41 0.44 16 31 H 0.06 0.92 7.19 -51.93 -0.37 0.55 16 32 H 0.38 5.99 8.46 -40.82 -0.35 5.65 16 33 H 0.09 1.80 6.68 -52.48 -0.35 1.45 16 34 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -28.45 313.32 -9.48 -37.93 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.64 Total: 9.83 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -4.69 Total: -26.90 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.17 Total: -39.61 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.45 -9.48 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384909810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.671 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds