Wall clock time and date at job start Mon Mar 30 2020 19:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47377 * 2 1 4 4 C 1.50697 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.33630 * 122.75131 * 124.73667 * 4 3 2 6 6 S 1.76197 * 107.92653 * 179.97438 * 5 4 3 7 7 C 1.70980 * 90.28363 * 0.27406 * 6 5 4 8 8 C 1.50691 * 124.92004 * 179.83988 * 7 6 5 9 9 N 1.46503 * 109.47123 * 269.99785 * 8 7 6 10 10 C 1.36935 * 119.99885 * 269.99648 * 9 8 7 11 11 H 1.08005 * 119.99527 * 142.08519 * 10 9 8 12 12 C 1.38814 * 120.00206 * 322.08883 * 10 9 8 13 13 N 1.31614 * 119.99653 * 156.99835 * 12 10 9 14 14 Si 1.86800 * 119.99985 * 336.99724 * 12 10 9 15 15 H 1.48500 * 109.46894 * 95.70083 * 14 12 10 16 16 H 1.48498 * 109.47045 * 215.70044 * 14 12 10 17 17 H 1.48497 * 109.47129 * 335.70454 * 14 12 10 18 18 C 1.46498 * 119.99971 * 90.00208 * 9 8 7 19 19 C 1.52997 * 109.47325 * 89.76952 * 18 9 8 20 20 C 1.53005 * 109.47326 * 180.02562 * 19 18 9 21 21 N 1.29030 * 110.16329 * 359.83733 * 7 6 5 22 22 H 1.08998 * 109.47358 * 299.99731 * 1 2 3 23 23 H 1.09002 * 109.47472 * 59.99769 * 1 2 3 24 24 H 1.08999 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46979 * 239.99911 * 2 1 3 26 26 H 1.09003 * 109.47122 * 120.00644 * 2 1 3 27 27 H 1.09002 * 109.47009 * 300.00515 * 3 2 1 28 28 H 1.09000 * 109.47139 * 60.00009 * 3 2 1 29 29 H 1.08003 * 126.03783 * 0.03276 * 5 4 3 30 30 H 1.08998 * 109.46976 * 29.99829 * 8 7 6 31 31 H 1.08998 * 109.47517 * 149.99517 * 8 7 6 32 32 H 0.97006 * 119.99987 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.47321 * 209.77329 * 18 9 8 34 34 H 1.09004 * 109.47136 * 329.76795 * 18 9 8 35 35 H 1.09005 * 109.47309 * 300.00108 * 19 18 9 36 36 H 1.09004 * 109.47141 * 59.99846 * 19 18 9 37 37 H 1.08994 * 109.47355 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46951 * 300.00250 * 20 19 18 39 39 H 1.09004 * 109.47199 * 59.99804 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2695 2.0829 -0.9244 6 16 5.9730 1.8265 -0.5543 7 6 5.5443 0.8768 0.8013 8 6 6.5241 0.2184 1.7379 9 7 6.8397 -1.1259 1.2485 10 6 6.0862 -2.1958 1.6520 11 1 5.8545 -2.9868 0.9541 12 6 5.6203 -2.2636 2.9578 13 7 4.5655 -2.9974 3.2428 14 14 6.4903 -1.3135 4.3105 15 1 5.8029 -0.0146 4.5238 16 1 6.4593 -2.1024 5.5682 17 1 7.9004 -1.0681 3.9147 18 6 7.9614 -1.3256 0.3276 19 6 9.2380 -1.5899 1.1285 20 6 10.4096 -1.7978 0.1667 21 7 4.2602 0.8055 0.9062 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.8785 2.6572 -1.7513 30 1 7.4372 0.8119 1.7844 31 1 6.0850 0.1490 2.7331 32 1 4.2397 -3.0446 4.1553 33 1 7.7542 -2.1791 -0.3178 34 1 8.0938 -0.4322 -0.2828 35 1 9.4453 -0.7363 1.7740 36 1 9.1055 -2.4832 1.7389 37 1 11.3189 -1.9865 0.7372 38 1 10.2026 -2.6511 -0.4791 39 1 10.5419 -0.9042 -0.4433 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559143622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:37 Heat of formation + Delta-G solvation = 46.136681 kcal Electronic energy + Delta-G solvation = -18730.266545 eV Core-core repulsion = 15992.890462 eV Total energy + Delta-G solvation = -2737.376083 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.33104 -36.58131 -34.41931 -32.97399 -31.58644 -30.18586 -27.28615 -26.65397 -25.82363 -22.86765 -21.98549 -21.18074 -20.00274 -18.97095 -17.42224 -16.58493 -15.44365 -14.90052 -14.75361 -14.57215 -14.19080 -13.78666 -13.42782 -13.26182 -12.92649 -12.58124 -12.38937 -12.25364 -12.03316 -11.82032 -11.51574 -11.27093 -10.90782 -10.84471 -10.77217 -10.59258 -10.53189 -10.29373 -10.10985 -9.94144 -9.61662 -8.89457 -8.76535 -8.52387 -8.15124 -6.99057 -6.02776 -3.43716 1.31752 1.99085 2.35465 3.30256 3.42725 3.47231 3.48218 4.49996 4.69073 4.96869 5.22487 5.28719 5.36613 5.40254 5.57498 5.62526 5.64041 5.73319 5.85399 5.88159 5.95507 5.99848 6.04024 6.07931 6.19808 6.31792 6.33652 6.37255 6.45925 6.51021 6.57042 6.74894 6.82480 6.85326 7.01426 7.97062 8.33937 8.53992 8.87602 9.65215 10.00461 11.11908 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.007707 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.038642 B = 3632.021206 C = 4740.722504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.039 4.039 4 C 0.079 3.921 5 C -0.285 4.285 6 S 0.051 5.949 7 C 0.084 3.916 8 C 0.197 3.803 9 N -0.583 5.583 10 C -0.271 4.271 11 H 0.078 0.922 12 C 0.052 3.948 13 N -0.883 5.883 14 Si 0.865 3.135 15 H -0.282 1.282 16 H -0.298 1.298 17 H -0.263 1.263 18 C 0.148 3.852 19 C -0.145 4.145 20 C -0.147 4.147 21 N -0.457 5.457 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 9.303 -7.190 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.079 4.079 4 C -0.054 4.054 5 C -0.425 4.425 6 S 0.306 5.694 7 C -0.198 4.198 8 C 0.067 3.933 9 N -0.303 5.303 10 C -0.400 4.400 11 H 0.096 0.904 12 C -0.151 4.151 13 N -0.522 5.522 14 Si 0.694 3.306 15 H -0.210 1.210 16 H -0.226 1.226 17 H -0.188 1.188 18 C 0.023 3.977 19 C -0.184 4.184 20 C -0.205 4.205 21 N -0.171 5.171 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.181 0.819 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.981 9.200 -7.081 11.778 hybrid contribution -0.609 0.488 0.687 1.039 sum 1.373 9.688 -6.394 11.689 Atomic orbital electron populations 1.21760 0.96170 1.01561 1.01052 1.21434 0.94815 0.95691 1.03732 1.20162 0.87481 0.98291 1.01997 1.20372 0.97726 0.95897 0.91370 1.26486 0.95001 1.13263 1.07724 1.83716 1.08525 1.48480 1.28723 1.29136 0.94878 0.96839 0.98991 1.20237 0.92362 0.86062 0.94615 1.44171 1.30972 1.01075 1.54092 1.18671 1.27267 0.99910 0.94103 0.90425 1.25375 0.96103 0.96410 0.97222 1.69882 1.20748 1.41686 1.19897 0.87100 0.81801 0.79244 0.82474 1.20961 1.22574 1.18760 1.21014 0.86105 0.98906 0.91707 1.22106 0.95399 1.02058 0.98869 1.21727 0.98180 1.01009 0.99568 1.66090 1.04687 1.19618 1.26679 0.92916 0.93345 0.92698 0.92343 0.89995 0.91176 0.90704 0.81862 0.91833 0.89767 0.92586 0.92675 0.94309 0.93121 0.91443 0.93589 0.93022 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.94 5.83 -26.73 -0.16 -2.10 16 3 C -0.04 -0.60 5.71 -27.89 -0.16 -0.76 16 4 C 0.08 1.46 6.08 -84.23 -0.51 0.95 16 5 C -0.29 -4.65 11.07 29.12 0.32 -4.33 16 6 S 0.05 0.86 23.18 -107.50 -2.49 -1.63 16 7 C 0.08 1.77 6.97 -13.46 -0.09 1.67 16 8 C 0.20 4.34 5.09 -5.20 -0.03 4.31 16 9 N -0.58 -13.54 2.05 -174.62 -0.36 -13.89 16 10 C -0.27 -7.44 9.90 -15.06 -0.15 -7.59 16 11 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 12 C 0.05 1.47 5.29 -17.43 -0.09 1.38 16 13 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 14 Si 0.86 21.64 25.10 -169.99 -4.27 17.38 16 15 H -0.28 -7.01 6.68 56.52 0.38 -6.63 16 16 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 17 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.15 2.87 5.67 -4.04 -0.02 2.84 16 19 C -0.14 -2.53 6.26 -26.73 -0.17 -2.70 16 20 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 21 N -0.46 -10.16 10.34 -8.06 -0.08 -10.24 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.65 8.08 -51.93 -0.42 1.23 16 27 H 0.07 0.87 8.03 -51.93 -0.42 0.46 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.08 2.05 3.37 -51.93 -0.18 1.88 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 34 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -30.30 332.74 -8.23 -38.53 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.50 Total: 0.30 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -0.32 Total: -9.54 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.33 Total: -50.05 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.27 Total: 17.38 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.30 -8.23 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559143622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.669 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds