Wall clock time and date at job start Mon Mar 30 2020 19:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47377 * 2 1 4 4 C 1.50697 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.33630 * 122.75131 * 124.73667 * 4 3 2 6 6 S 1.76197 * 107.92653 * 179.97438 * 5 4 3 7 7 C 1.70980 * 90.28363 * 0.27406 * 6 5 4 8 8 C 1.50691 * 124.92004 * 179.83988 * 7 6 5 9 9 N 1.46503 * 109.47123 * 269.99785 * 8 7 6 10 10 C 1.36935 * 119.99885 * 269.99648 * 9 8 7 11 11 H 1.08005 * 119.99527 * 142.08519 * 10 9 8 12 12 C 1.38814 * 120.00206 * 322.08883 * 10 9 8 13 13 N 1.31614 * 119.99653 * 156.99835 * 12 10 9 14 14 Si 1.86800 * 119.99985 * 336.99724 * 12 10 9 15 15 H 1.48500 * 109.46894 * 95.70083 * 14 12 10 16 16 H 1.48498 * 109.47045 * 215.70044 * 14 12 10 17 17 H 1.48497 * 109.47129 * 335.70454 * 14 12 10 18 18 C 1.46498 * 119.99971 * 90.00208 * 9 8 7 19 19 C 1.52997 * 109.47325 * 89.76952 * 18 9 8 20 20 C 1.53005 * 109.47326 * 180.02562 * 19 18 9 21 21 N 1.29030 * 110.16329 * 359.83733 * 7 6 5 22 22 H 1.08998 * 109.47358 * 299.99731 * 1 2 3 23 23 H 1.09002 * 109.47472 * 59.99769 * 1 2 3 24 24 H 1.08999 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46979 * 239.99911 * 2 1 3 26 26 H 1.09003 * 109.47122 * 120.00644 * 2 1 3 27 27 H 1.09002 * 109.47009 * 300.00515 * 3 2 1 28 28 H 1.09000 * 109.47139 * 60.00009 * 3 2 1 29 29 H 1.08003 * 126.03783 * 0.03276 * 5 4 3 30 30 H 1.08998 * 109.46976 * 29.99829 * 8 7 6 31 31 H 1.08998 * 109.47517 * 149.99517 * 8 7 6 32 32 H 0.97006 * 119.99987 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.47321 * 209.77329 * 18 9 8 34 34 H 1.09004 * 109.47136 * 329.76795 * 18 9 8 35 35 H 1.09005 * 109.47309 * 300.00108 * 19 18 9 36 36 H 1.09004 * 109.47141 * 59.99846 * 19 18 9 37 37 H 1.08994 * 109.47355 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46951 * 300.00250 * 20 19 18 39 39 H 1.09004 * 109.47199 * 59.99804 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2695 2.0829 -0.9244 6 16 5.9730 1.8265 -0.5543 7 6 5.5443 0.8768 0.8013 8 6 6.5241 0.2184 1.7379 9 7 6.8397 -1.1259 1.2485 10 6 6.0862 -2.1958 1.6520 11 1 5.8545 -2.9868 0.9541 12 6 5.6203 -2.2636 2.9578 13 7 4.5655 -2.9974 3.2428 14 14 6.4903 -1.3135 4.3105 15 1 5.8029 -0.0146 4.5238 16 1 6.4593 -2.1024 5.5682 17 1 7.9004 -1.0681 3.9147 18 6 7.9614 -1.3256 0.3276 19 6 9.2380 -1.5899 1.1285 20 6 10.4096 -1.7978 0.1667 21 7 4.2602 0.8055 0.9062 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.8785 2.6572 -1.7513 30 1 7.4372 0.8119 1.7844 31 1 6.0850 0.1490 2.7331 32 1 4.2397 -3.0446 4.1553 33 1 7.7542 -2.1791 -0.3178 34 1 8.0938 -0.4322 -0.2828 35 1 9.4453 -0.7363 1.7740 36 1 9.1055 -2.4832 1.7389 37 1 11.3189 -1.9865 0.7372 38 1 10.2026 -2.6511 -0.4791 39 1 10.5419 -0.9042 -0.4433 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559143622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:37 Heat of formation + Delta-G solvation = 27.939758 kcal Electronic energy + Delta-G solvation = -18731.055623 eV Core-core repulsion = 15992.890462 eV Total energy + Delta-G solvation = -2738.165161 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79233 -38.28186 -35.70605 -34.60480 -33.43958 -31.66221 -28.83487 -27.89828 -27.56308 -24.48520 -23.50192 -22.48530 -21.58973 -20.42755 -19.19252 -18.21505 -17.29718 -16.44794 -16.30056 -15.89761 -15.67066 -15.31873 -14.89594 -14.84554 -14.48237 -14.16341 -13.88779 -13.76877 -13.33874 -13.20442 -12.85871 -12.80566 -12.47551 -12.29957 -12.19380 -12.11414 -12.02372 -11.85867 -11.58195 -11.55600 -11.37512 -10.68553 -10.34059 -10.19535 -9.53262 -8.89296 -8.20998 -5.59855 -0.10927 0.59852 0.92151 1.29115 1.37638 1.48706 1.97318 2.41302 3.02436 3.35812 3.37727 4.00200 4.06674 4.17059 4.22251 4.25813 4.36140 4.46722 4.52110 4.61450 4.64072 4.66009 4.76535 4.77423 4.88724 4.92299 4.97574 5.15228 5.17314 5.27902 5.33051 5.41795 5.42405 5.48262 5.58913 5.91432 6.15665 6.90806 7.11554 7.57124 7.96999 8.98335 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.007707 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.038642 B = 3632.021206 C = 4740.722504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.035 4.035 4 C 0.045 3.955 5 C -0.265 4.265 6 S 0.128 5.872 7 C 0.037 3.963 8 C 0.196 3.804 9 N -0.595 5.595 10 C -0.255 4.255 11 H 0.033 0.967 12 C -0.003 4.003 13 N -0.938 5.938 14 Si 0.928 3.072 15 H -0.282 1.282 16 H -0.306 1.306 17 H -0.240 1.240 18 C 0.146 3.854 19 C -0.140 4.140 20 C -0.139 4.139 21 N -0.500 5.500 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.028 0.972 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.207 0.793 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.261 0.739 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 12.530 -9.302 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.074 4.074 4 C -0.087 4.087 5 C -0.404 4.404 6 S 0.383 5.617 7 C -0.244 4.244 8 C 0.067 3.933 9 N -0.317 5.317 10 C -0.385 4.385 11 H 0.051 0.949 12 C -0.201 4.201 13 N -0.581 5.581 14 Si 0.757 3.243 15 H -0.210 1.210 16 H -0.235 1.235 17 H -0.163 1.163 18 C 0.022 3.978 19 C -0.179 4.179 20 C -0.197 4.197 21 N -0.216 5.216 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.224 0.776 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.276 12.452 -9.215 15.833 hybrid contribution -1.024 -0.396 1.122 1.570 sum 2.252 12.056 -8.093 14.694 Atomic orbital electron populations 1.21706 0.93367 1.01935 1.02770 1.21338 0.97248 0.96246 1.00477 1.20253 0.85837 0.97395 1.03950 1.20808 0.99177 0.96870 0.91855 1.27087 0.94771 1.11241 1.07297 1.83275 1.08019 1.45614 1.24830 1.28624 0.94651 0.99650 1.01497 1.20112 0.93836 0.85772 0.93573 1.44190 1.32023 1.00740 1.54729 1.18417 1.26558 1.00356 0.93173 0.94906 1.25950 0.96649 0.98061 0.99440 1.70018 1.22998 1.45077 1.20002 0.86076 0.81652 0.77542 0.79077 1.21021 1.23453 1.16344 1.21152 0.85688 0.99589 0.91370 1.22008 0.95926 1.00827 0.99164 1.21658 0.96901 1.02069 0.99032 1.66079 1.05942 1.20613 1.28972 0.92275 0.90426 0.93105 0.93555 0.95314 0.87203 0.90548 0.77639 0.88555 0.92785 0.93000 0.93944 0.91711 0.92764 0.94241 0.92104 0.92864 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.11 -3.81 5.83 30.59 0.18 -3.63 16 3 C -0.03 -1.00 5.71 29.85 0.17 -0.83 16 4 C 0.04 1.59 6.08 41.52 0.25 1.84 16 5 C -0.26 -7.58 11.07 66.77 0.74 -6.84 16 6 S 0.13 3.86 23.18 -56.49 -1.31 2.55 16 7 C 0.04 1.51 6.97 88.52 0.62 2.12 16 8 C 0.20 8.51 5.09 85.63 0.44 8.95 16 9 N -0.60 -27.88 2.05 -706.36 -1.45 -29.33 16 10 C -0.26 -14.73 9.90 84.03 0.83 -13.90 16 11 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 12 C 0.00 -0.19 5.29 84.86 0.45 0.26 16 13 N -0.94 -60.44 13.97 21.65 0.30 -60.13 16 14 Si 0.93 46.63 25.10 68.60 1.72 48.35 16 15 H -0.28 -14.05 6.68 99.48 0.66 -13.38 16 16 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 17 H -0.24 -10.98 7.11 99.48 0.71 -10.27 16 18 C 0.15 5.52 5.67 86.38 0.49 6.01 16 19 C -0.14 -4.67 6.26 30.59 0.19 -4.48 16 20 C -0.14 -3.43 9.91 71.98 0.71 -2.72 16 21 N -0.50 -22.39 10.34 -179.41 -1.86 -24.24 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 27 H 0.11 2.28 8.03 -2.39 -0.02 2.26 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.21 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.10 3.42 8.07 -2.39 -0.02 3.40 16 31 H 0.05 2.66 3.37 -2.39 -0.01 2.65 16 32 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 33 H 0.04 1.68 8.04 -2.39 -0.02 1.66 16 34 H 0.06 2.08 8.07 -2.38 -0.02 2.07 16 35 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -71.74 332.74 4.15 -67.59 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.96 Total: 11.22 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 5.78 Total: -16.01 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -3.00 Total: -113.71 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.72 Total: 48.35 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.31 Total: 2.55 kcal Total: -71.74 4.15 -67.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559143622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.529 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds