Wall clock time and date at job start Mon Mar 30 2020 19:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35714 * 117.00659 * 2 1 4 4 C 1.38707 * 119.62440 * 179.97438 * 3 2 1 5 5 C 1.38659 * 119.29662 * 180.02562 * 4 3 2 6 6 C 1.38601 * 118.54218 * 0.02562 * 5 4 3 7 7 F 1.35104 * 120.40733 * 179.97438 * 6 5 4 8 8 C 1.39156 * 119.18791 * 0.24202 * 6 5 4 9 9 N 1.39135 * 119.68468 * 179.74941 * 8 6 5 10 10 C 1.46504 * 120.00475 * 180.02562 * 9 8 6 11 11 C 1.52990 * 109.47450 * 180.02562 * 10 9 8 12 12 C 1.53011 * 109.47221 * 300.00083 * 11 10 9 13 13 C 1.52997 * 109.47440 * 59.99692 * 11 10 9 14 14 C 1.50704 * 109.47267 * 180.02562 * 11 10 9 15 15 H 1.07999 * 119.99948 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00046 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00144 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00100 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47062 * 89.99625 * 18 16 14 20 20 H 1.48495 * 109.47101 * 210.00254 * 18 16 14 21 21 H 1.48501 * 109.46781 * 329.99839 * 18 16 14 22 22 N 1.32333 * 119.61444 * 0.02562 * 3 2 1 23 23 H 1.08996 * 109.47462 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47187 * 300.00859 * 1 2 3 25 25 H 1.09002 * 109.46704 * 60.00491 * 1 2 3 26 26 H 1.07998 * 120.35327 * 0.04251 * 4 3 2 27 27 H 1.07993 * 120.72903 * 179.97438 * 5 4 3 28 28 H 0.97008 * 120.00215 * 0.02562 * 9 8 6 29 29 H 1.08996 * 109.47020 * 300.00592 * 10 9 8 30 30 H 1.09007 * 109.46882 * 59.99902 * 10 9 8 31 31 H 1.08993 * 109.46705 * 59.99856 * 12 11 10 32 32 H 1.08998 * 109.46959 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.46583 * 300.00151 * 12 11 10 34 34 H 1.09004 * 109.46737 * 59.99966 * 13 11 10 35 35 H 1.08998 * 109.47574 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47604 * 300.00267 * 13 11 10 37 37 H 0.97001 * 119.99484 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4309 1.2725 0.0005 5 6 4.0534 2.5115 0.0011 6 6 3.2628 3.6499 0.0016 7 9 3.8298 4.8762 0.0027 8 6 1.8779 3.5143 0.0067 9 7 1.0744 4.6502 0.0126 10 6 -0.3844 4.5156 0.0185 11 6 -1.0248 5.9050 0.0236 12 6 -0.5779 6.6681 1.2723 13 6 -0.5886 6.6723 -1.2261 14 6 -2.5255 5.7665 0.0303 15 1 -2.9772 4.7856 0.0306 16 6 -3.3216 6.8921 0.0363 17 7 -2.7715 8.0868 0.0355 18 14 -5.1817 6.7205 0.0439 19 1 -5.6686 6.6718 1.4460 20 1 -5.7890 7.8838 -0.6510 21 1 -5.5662 5.4692 -0.6573 22 7 1.3172 2.3142 0.0005 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 4.0186 0.3665 0.0003 27 1 5.1307 2.5878 0.0019 28 1 1.4801 5.5314 0.0127 29 1 -0.7028 3.9724 -0.8712 30 1 -0.6952 3.9686 0.9087 31 1 0.5074 6.7682 1.2678 32 1 -1.0338 7.6581 1.2756 33 1 -0.8887 6.1215 2.1626 34 1 -0.9069 6.1287 -2.1157 35 1 -1.0452 7.6620 -1.2228 36 1 0.4968 6.7725 -1.2306 37 1 -3.3317 8.8786 0.0400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578338335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:52 Heat of formation + Delta-G solvation = -63.602722 kcal Electronic energy + Delta-G solvation = -20703.255611 eV Core-core repulsion = 17394.907694 eV Total energy + Delta-G solvation = -3308.347917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.72672 -41.53443 -39.33866 -38.26372 -35.56925 -33.36556 -32.58569 -30.31907 -28.17027 -27.62023 -27.40460 -26.32929 -23.97283 -23.66049 -20.62309 -19.80768 -18.40581 -18.38702 -17.94664 -17.31797 -17.22471 -16.48603 -16.41655 -15.73665 -15.41587 -15.36654 -14.82300 -14.43441 -14.35139 -14.13478 -14.04278 -13.56762 -13.31617 -13.11676 -12.82161 -12.72304 -12.59507 -12.41265 -12.14320 -12.09278 -11.52788 -11.20439 -11.06525 -10.81340 -10.64579 -10.41417 -10.21936 -8.50972 -8.02880 -6.19473 0.15381 0.33009 1.42637 1.45108 1.53296 2.01585 2.27928 2.47301 2.70845 3.20797 3.23095 3.42479 3.91743 4.20799 4.38362 4.44216 4.47837 4.52739 4.56029 4.67098 4.79806 4.81646 4.96525 5.01094 5.07568 5.08515 5.15934 5.38439 5.44469 5.62105 5.65141 5.84410 6.08912 6.17243 6.30939 6.32690 6.41859 6.85390 7.06752 7.48521 8.96424 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.022723 B = 0.005269 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.955526 B = 5312.802394 C = 6348.392312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.308 6.308 3 C 0.342 3.658 4 C -0.226 4.226 5 C -0.017 4.017 6 C -0.084 4.084 7 F -0.144 7.144 8 C 0.407 3.593 9 N -0.707 5.707 10 C 0.169 3.831 11 C 0.048 3.952 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.524 4.524 15 H 0.049 0.951 16 C 0.025 3.975 17 N -0.902 5.902 18 Si 0.948 3.052 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 N -0.595 5.595 23 H 0.128 0.872 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.176 0.824 27 H 0.187 0.813 28 H 0.412 0.588 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.534 -12.354 -0.058 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.215 6.215 3 C 0.162 3.838 4 C -0.249 4.249 5 C -0.042 4.042 6 C -0.111 4.111 7 F -0.123 7.123 8 C 0.168 3.832 9 N -0.339 5.339 10 C 0.045 3.955 11 C 0.048 3.952 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.563 4.563 15 H 0.068 0.932 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.775 3.225 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 N -0.329 5.329 23 H 0.146 0.854 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.193 0.807 27 H 0.205 0.795 28 H 0.250 0.750 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.465 -12.465 -0.065 16.275 hybrid contribution -0.566 1.041 0.016 1.185 sum 9.898 -11.424 -0.049 15.116 Atomic orbital electron populations 1.22989 0.76268 1.04547 1.01794 1.86230 1.23847 1.23822 1.87577 1.19914 0.90089 0.83628 0.90146 1.20909 0.90605 0.99813 1.13619 1.21498 1.02034 0.88634 0.92071 1.17940 0.89718 0.82198 1.21268 1.91426 1.84650 1.40742 1.95468 1.18213 0.87057 0.86732 0.91165 1.44992 1.06350 1.05017 1.77542 1.21157 0.77116 0.98314 0.98920 1.18391 0.94012 0.89889 0.92942 1.21661 0.96766 1.02154 0.97144 1.21657 0.96781 1.02153 0.97127 1.21235 0.91392 0.92510 1.51147 0.93235 1.25515 1.02134 0.95100 0.94668 1.69934 1.35758 0.97682 1.50743 0.85706 0.81264 0.77526 0.77999 1.20469 1.21050 1.19709 1.66743 1.40803 0.97413 1.27976 0.85352 0.93311 0.93311 0.80700 0.79539 0.74967 0.94165 0.94149 0.95453 0.91937 0.96119 0.96116 0.91941 0.95443 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.38 113.37 1.18 2.06 16 2 O -0.31 -7.94 10.47 -90.36 -0.95 -8.89 16 3 C 0.34 9.70 7.48 84.73 0.63 10.33 16 4 C -0.23 -4.93 10.03 22.48 0.23 -4.70 16 5 C -0.02 -0.37 10.15 22.46 0.23 -0.14 16 6 C -0.08 -2.46 7.34 22.58 0.17 -2.30 16 7 F -0.14 -4.30 16.64 44.97 0.75 -3.55 16 8 C 0.41 14.00 7.48 133.00 1.00 15.00 16 9 N -0.71 -26.44 5.11 -344.89 -1.76 -28.20 16 10 C 0.17 7.16 4.52 86.38 0.39 7.55 16 11 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 12 C -0.12 -5.57 8.08 71.99 0.58 -4.99 16 13 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 14 C -0.52 -27.64 8.01 25.60 0.21 -27.44 16 15 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 16 C 0.03 1.34 5.15 84.65 0.44 1.78 16 17 N -0.90 -48.91 9.35 21.45 0.20 -48.71 16 18 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 N -0.60 -20.17 8.41 -306.09 -2.58 -22.75 16 23 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 25 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 26 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 27 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.41 15.05 5.62 -92.70 -0.52 14.53 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 32 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 36 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 37 H 0.26 13.56 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -58.53 308.63 3.85 -54.68 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.56 Total: 18.53 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.59 Total: -5.57 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.14 Total: -99.65 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.95 Total: -8.89 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.75 Total: -3.55 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -58.53 3.85 -54.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578338335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.919 kcal (2) G-P(sol) polarization free energy of solvation -58.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds