Wall clock time and date at job start Mon Mar 30 2020 19:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 S 1.81396 * 109.46743 * 164.50404 * 3 2 1 5 5 C 1.81399 * 102.99748 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47039 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47188 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47236 * 179.97438 * 7 6 5 9 9 C 1.46848 * 110.99918 * 293.95281 * 8 7 6 10 10 C 1.53037 * 109.52381 * 174.15634 * 9 8 7 11 11 C 1.53123 * 109.27398 * 59.18254 * 10 9 8 12 12 C 1.53120 * 109.21163 * 302.31409 * 11 10 9 13 13 H 1.08997 * 109.50353 * 297.74224 * 12 11 10 14 14 C 1.50708 * 109.50132 * 177.62791 * 12 11 10 15 15 H 1.07995 * 119.99570 * 239.99751 * 14 12 11 16 16 C 1.37877 * 119.99938 * 59.99803 * 14 12 11 17 17 N 1.31511 * 120.00144 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 119.99782 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47232 * 120.00194 * 18 16 14 21 21 H 1.48505 * 109.47012 * 240.00252 * 18 16 14 22 22 C 1.46845 * 111.00045 * 169.74692 * 8 7 6 23 23 H 1.08990 * 109.47362 * 44.50210 * 3 2 1 24 24 H 1.09001 * 109.46852 * 284.49879 * 3 2 1 25 25 H 1.08992 * 109.47451 * 60.00157 * 5 4 3 26 26 H 1.09006 * 109.47421 * 299.99370 * 5 4 3 27 27 H 1.08992 * 109.47175 * 59.99616 * 6 5 4 28 28 H 1.09001 * 109.46825 * 299.99426 * 6 5 4 29 29 H 1.09004 * 109.46657 * 59.99648 * 7 6 5 30 30 H 1.08999 * 109.47193 * 299.99934 * 7 6 5 31 31 H 1.09006 * 109.46097 * 54.14433 * 9 8 7 32 32 H 1.08996 * 109.46046 * 294.17217 * 9 8 7 33 33 H 1.08996 * 109.50616 * 299.24564 * 10 9 8 34 34 H 1.08993 * 109.53667 * 179.13827 * 10 9 8 35 35 H 1.09002 * 109.52319 * 62.25202 * 11 10 9 36 36 H 1.08995 * 109.52318 * 182.37884 * 11 10 9 37 37 H 0.97002 * 120.00547 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.45905 * 305.85870 * 22 8 7 39 39 H 1.09002 * 109.46166 * 65.83312 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2118 1.6490 -0.4569 5 6 5.0144 1.4531 -0.4016 6 6 5.6831 2.7795 -0.7685 7 6 7.2034 2.6144 -0.7212 8 7 7.8455 3.8877 -1.0740 9 6 7.5760 4.2429 -2.4732 10 6 8.1342 5.6380 -2.7632 11 6 9.6421 5.6446 -2.4967 12 6 9.8993 5.2252 -1.0467 13 1 9.4398 5.9476 -0.3720 14 6 11.3841 5.1731 -0.7939 15 1 11.8475 4.2468 -0.4881 16 6 12.1507 6.3080 -0.9530 17 7 11.5862 7.4361 -1.3248 18 14 13.9912 6.2432 -0.6403 19 1 14.3763 4.8674 -0.2350 20 1 14.7175 6.6159 -1.8808 21 1 14.3428 7.1948 0.4442 22 6 9.2886 3.8413 -0.8065 23 1 2.9717 -0.7321 -0.7203 24 1 2.9714 -0.2565 0.9950 25 1 5.3182 0.6840 -1.1116 26 1 5.3173 1.1598 0.6037 27 1 5.3792 3.5483 -0.0582 28 1 5.3803 3.0732 -1.7735 29 1 7.5076 1.8454 -1.4313 30 1 7.5059 2.3208 0.2840 31 1 6.5001 4.2386 -2.6482 32 1 8.0538 3.5167 -3.1307 33 1 7.6471 6.3668 -2.1155 34 1 7.9479 5.8956 -3.8058 35 1 10.1343 4.9440 -3.1713 36 1 10.0367 6.6471 -2.6614 37 1 12.1255 8.2346 -1.4364 38 1 9.4566 3.5452 0.2290 39 1 9.7582 3.1170 -1.4720 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595615033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:01 Heat of formation + Delta-G solvation = -5.300918 kcal Electronic energy + Delta-G solvation = -17613.346363 eV Core-core repulsion = 14873.739778 eV Total energy + Delta-G solvation = -2739.606585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85765 -37.76345 -36.31306 -34.47352 -32.53894 -31.59938 -31.18598 -27.22109 -26.86046 -23.97217 -23.34665 -21.72746 -20.32576 -19.05369 -18.40022 -17.15143 -16.77655 -16.52941 -16.28769 -15.87515 -15.66153 -15.29448 -14.89336 -14.73671 -14.38039 -14.06463 -13.98166 -13.57663 -13.47783 -13.19128 -12.90116 -12.84729 -12.69137 -12.60294 -12.47534 -12.11177 -11.84030 -11.67877 -11.48772 -11.34476 -10.94598 -10.74900 -10.61466 -10.34826 -9.06029 -8.69256 -8.05719 -6.19832 0.20498 1.41769 1.43643 1.49901 1.54662 1.67866 2.10393 2.44593 2.83543 3.14616 3.21340 3.99689 4.09456 4.20482 4.23613 4.31484 4.38931 4.43815 4.51887 4.56501 4.66168 4.72677 4.79501 4.87003 4.94966 5.02478 5.13719 5.20068 5.24552 5.38025 5.44388 5.56600 5.66585 6.00689 6.16284 6.25557 6.42238 6.45456 6.49803 6.94090 7.48198 8.98961 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.053976 B = 0.002823 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.626321 B = 9914.914267 C =10234.401244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.245 3.755 3 C 0.009 3.991 4 S -0.276 6.276 5 C -0.066 4.066 6 C -0.095 4.095 7 C 0.063 3.937 8 N -0.553 5.553 9 C 0.066 3.934 10 C -0.113 4.113 11 C -0.105 4.105 12 C 0.050 3.950 13 H -0.005 1.005 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.917 5.917 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.083 3.917 23 H 0.161 0.839 24 H 0.160 0.840 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.055 0.945 37 H 0.259 0.741 38 H 0.059 0.941 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 -15.554 0.688 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.073 4.073 3 C -0.140 4.140 4 S -0.051 6.051 5 C -0.215 4.215 6 C -0.134 4.134 7 C -0.067 4.067 8 N -0.278 5.278 9 C -0.062 4.062 10 C -0.151 4.151 11 C -0.143 4.143 12 C 0.031 3.969 13 H 0.013 0.987 14 C -0.571 4.571 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.780 3.220 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.045 4.045 23 H 0.179 0.821 24 H 0.178 0.822 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.491 -14.145 0.706 20.263 hybrid contribution 2.537 -0.995 -0.101 2.727 sum -11.954 -15.140 0.606 19.300 Atomic orbital electron populations 1.81295 1.14308 1.09325 1.10423 1.28521 0.94588 0.92298 0.91867 1.20941 0.82983 0.99193 1.10919 1.87760 1.08832 1.16366 1.92106 1.23369 0.89581 1.01439 1.07080 1.21214 0.93370 0.96127 1.02704 1.22082 0.93687 0.89540 1.01351 1.61874 1.11639 1.32203 1.22048 1.22050 1.00551 0.95673 0.87877 1.21594 0.96269 0.97035 1.00157 1.21466 0.93945 1.01111 0.97782 1.18631 0.93315 0.91844 0.93070 0.98720 1.21570 0.94190 0.95734 1.45654 0.92847 1.25743 1.02726 0.95219 0.95057 1.70049 1.36739 1.00702 1.48149 0.85566 0.80529 0.78269 0.77636 1.18955 1.20779 1.20786 1.21973 0.85937 0.97591 0.98974 0.82137 0.82210 0.87461 0.87507 0.91503 0.91343 0.94082 0.90201 0.89267 0.95478 0.93368 0.91508 0.95898 0.92665 0.93162 0.92213 0.96495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.66 18.54 20.01 0.37 -10.29 16 2 C 0.24 3.62 15.44 89.44 1.38 5.00 16 3 C 0.01 0.05 6.42 70.18 0.45 0.50 16 4 S -0.28 -3.77 21.69 -56.49 -1.23 -4.99 16 5 C -0.07 -0.70 5.94 71.98 0.43 -0.27 16 6 C -0.10 -1.72 5.16 30.60 0.16 -1.57 16 7 C 0.06 1.43 4.96 86.30 0.43 1.86 16 8 N -0.55 -18.25 4.66 -896.08 -4.17 -22.43 16 9 C 0.07 2.08 5.29 86.33 0.46 2.54 16 10 C -0.11 -4.27 6.09 30.65 0.19 -4.08 16 11 C -0.10 -4.99 5.02 30.68 0.15 -4.84 16 12 C 0.05 2.53 2.27 -11.44 -0.03 2.50 16 13 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 14 C -0.53 -29.23 8.57 25.60 0.22 -29.01 16 15 H 0.05 2.85 7.75 -2.91 -0.02 2.83 16 16 C 0.01 0.61 5.30 84.66 0.45 1.06 16 17 N -0.92 -53.35 11.35 21.45 0.24 -53.11 16 18 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.08 3.33 4.69 86.37 0.41 3.74 16 23 H 0.16 -0.07 8.14 -2.40 -0.02 -0.09 16 24 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.32 6.44 -2.39 -0.02 1.30 16 29 H 0.04 0.85 8.12 -2.38 -0.02 0.83 16 30 H 0.08 1.71 7.98 -2.39 -0.02 1.69 16 31 H 0.09 2.33 6.22 -2.38 -0.01 2.32 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 3.01 6.15 -2.39 -0.01 2.99 16 37 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.06 2.35 8.01 -2.39 -0.02 2.33 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -68.64 330.79 2.94 -65.70 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.01 Total: 2.27 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 4.69 Total: -22.57 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -3.56 Total: -85.83 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.23 Total: -4.99 kcal Total: -68.64 2.94 -65.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.394 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds