Wall clock time and date at job start Mon Mar 30 2020 19:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.34394 * 126.51709 * 34.68692 * 4 2 1 6 6 N 1.34367 * 108.34122 * 179.89751 * 5 4 2 7 7 C 1.31265 * 109.30686 * 0.37370 * 6 5 4 8 8 S 1.76204 * 125.80043 * 179.76811 * 7 6 5 9 9 C 1.80995 * 100.00085 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46903 * 300.00160 * 10 9 8 12 12 C 1.53001 * 109.46904 * 59.99964 * 10 9 8 13 13 C 1.50697 * 109.47306 * 179.97438 * 10 9 8 14 14 H 1.08008 * 119.99901 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00028 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99871 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47537 * 89.99712 * 17 15 13 19 19 H 1.48502 * 109.47284 * 210.00385 * 17 15 13 20 20 H 1.48508 * 109.47059 * 329.99816 * 17 15 13 21 21 N 1.36116 * 108.39723 * 359.77111 * 7 6 5 22 22 H 0.96995 * 126.50270 * 180.02562 * 21 7 6 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.07992 * 125.82895 * 0.02562 * 5 4 2 31 31 H 1.08996 * 109.46944 * 300.00057 * 9 8 7 32 32 H 1.09006 * 109.47072 * 59.99954 * 9 8 7 33 33 H 1.08997 * 109.47508 * 59.99926 * 11 10 9 34 34 H 1.08998 * 109.46817 * 179.97438 * 11 10 9 35 35 H 1.09006 * 109.47159 * 299.99824 * 11 10 9 36 36 H 1.08996 * 109.47172 * 59.99903 * 12 10 9 37 37 H 1.09004 * 109.46553 * 180.02562 * 12 10 9 38 38 H 1.08997 * 109.47137 * 299.99847 * 12 10 9 39 39 H 0.97001 * 119.99849 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.4617 -0.7032 -2.4471 6 7 2.2134 -1.4524 -3.2712 7 6 3.2359 -1.9368 -2.6057 8 16 4.4929 -2.9814 -3.2642 9 6 3.9228 -3.1180 -4.9766 10 6 4.8875 -4.0051 -5.7661 11 6 6.2860 -3.3851 -5.7421 12 6 4.9356 -5.3967 -5.1320 13 6 4.4125 -4.1194 -7.1917 14 1 3.5122 -3.6106 -7.5034 15 6 5.1271 -4.8736 -8.0981 16 7 6.2236 -5.4927 -7.7186 17 14 4.5387 -5.0147 -9.8653 18 1 5.1389 -3.9245 -10.6755 19 1 4.9507 -6.3288 -10.4208 20 1 3.0584 -4.9030 -9.9045 21 7 3.1601 -1.4952 -1.3204 22 1 3.7826 -1.6951 -0.6039 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 0.5549 -0.1824 -2.7169 31 1 2.9263 -3.5593 -4.9936 32 1 3.8889 -2.1266 -5.4285 33 1 6.6294 -3.3028 -4.7109 34 1 6.9734 -4.0173 -6.3041 35 1 6.2518 -2.3936 -6.1939 36 1 3.9393 -5.8384 -5.1490 37 1 5.6233 -6.0285 -5.6942 38 1 5.2790 -5.3144 -4.1008 39 1 6.7262 -6.0236 -8.3562 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600584079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:14 Heat of formation + Delta-G solvation = 28.589312 kcal Electronic energy + Delta-G solvation = -18110.221480 eV Core-core repulsion = 15372.084486 eV Total energy + Delta-G solvation = -2738.136994 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65796 -35.96352 -35.66723 -32.25983 -31.48273 -28.64412 -27.37147 -26.12745 -25.65352 -25.09447 -22.86695 -21.65360 -20.13997 -19.07421 -17.84268 -15.96133 -15.76971 -15.08277 -14.68919 -14.42091 -14.38218 -13.79881 -13.60006 -13.28563 -13.02728 -12.69045 -12.39053 -12.13895 -11.69315 -11.47287 -11.36482 -11.26938 -11.21515 -10.83284 -10.68964 -10.29122 -10.21576 -9.95970 -9.84716 -9.75848 -9.54331 -9.38919 -8.88227 -8.64169 -8.34343 -6.86506 -5.97650 -4.08047 1.77914 2.06984 2.94492 3.26131 3.31456 3.38178 3.41614 3.45594 4.43777 4.56152 4.64649 4.90155 5.21649 5.27444 5.28790 5.38250 5.52370 5.57100 5.60538 5.79173 5.91633 5.99172 6.13571 6.21717 6.34426 6.60743 6.83470 6.88250 6.95153 7.07784 7.08565 7.32262 7.39318 7.61945 7.74659 8.05735 8.13834 8.18133 8.42312 8.91467 9.57110 11.03630 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039474 B = 0.003919 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.160698 B = 7142.126806 C = 7508.894651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.015 4.015 3 C -0.143 4.143 4 C -0.026 4.026 5 C -0.012 4.012 6 N -0.488 5.488 7 C 0.203 3.797 8 S -0.046 6.046 9 C -0.056 4.056 10 C 0.078 3.922 11 C -0.134 4.134 12 C -0.134 4.134 13 C -0.502 4.502 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.560 5.560 22 H 0.417 0.583 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.165 0.835 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.016 0.984 34 H 0.086 0.914 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 9.107 15.350 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.035 4.035 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.162 4.162 6 N -0.211 5.211 7 C -0.168 4.168 8 S 0.185 5.815 9 C -0.205 4.205 10 C 0.076 3.924 11 C -0.192 4.192 12 C -0.192 4.192 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.166 5.166 22 H 0.255 0.745 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.182 0.818 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.035 0.965 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.035 0.965 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.431 8.379 14.933 17.964 hybrid contribution -0.979 0.576 -0.351 1.189 sum -6.410 8.955 14.582 18.273 Atomic orbital electron populations 1.21800 0.93451 1.02400 1.02217 1.19488 0.96206 0.95001 0.92796 1.21859 1.01068 0.94977 1.02182 1.21226 0.91657 1.02733 0.98766 1.22012 1.01510 1.03246 0.89458 1.70879 1.04342 1.13990 1.31840 1.25795 1.02355 1.04741 0.83886 1.85633 1.26421 1.55201 1.14213 1.24000 1.03643 1.04816 0.88039 1.18079 0.90555 0.90421 0.93350 1.21904 0.99914 0.99824 0.97603 1.21901 1.00780 0.99924 0.96628 1.21017 1.09902 1.30327 0.92997 0.92374 1.24879 0.94844 0.95204 0.98560 1.69814 1.16018 1.32129 1.34456 0.86561 0.79151 0.77317 0.84780 1.20704 1.21261 1.19884 1.43288 1.22517 1.39958 1.10849 0.74524 0.92247 0.91915 0.92105 0.90907 0.92179 0.92829 0.92005 0.81758 0.90170 0.90183 0.96537 0.89512 0.95291 0.95276 0.89526 0.96539 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.78 37.16 0.33 -0.76 16 2 C -0.01 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 4 C -0.03 -0.34 6.17 -81.32 -0.50 -0.84 16 5 C -0.01 -0.19 11.03 -17.80 -0.20 -0.38 16 6 N -0.49 -9.21 10.60 -13.45 -0.14 -9.35 16 7 C 0.20 3.59 8.26 -88.75 -0.73 2.86 16 8 S -0.05 -0.86 19.36 -107.50 -2.08 -2.94 16 9 C -0.06 -1.24 4.14 37.16 0.15 -1.08 16 10 C 0.08 1.89 0.52 -155.66 -0.08 1.81 16 11 C -0.13 -3.20 8.01 37.16 0.30 -2.90 16 12 C -0.13 -3.20 8.01 37.16 0.30 -2.90 16 13 C -0.50 -13.45 8.01 -34.44 -0.28 -13.73 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 16 N -0.89 -24.10 9.35 55.43 0.52 -23.58 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 N -0.56 -7.76 6.24 -8.98 -0.06 -7.82 16 22 H 0.42 4.55 8.96 -40.82 -0.37 4.18 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.48 7.30 -51.93 -0.38 0.10 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.17 2.09 7.37 -52.49 -0.39 1.71 16 31 H 0.08 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.08 1.81 8.14 -51.91 -0.42 1.38 16 33 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 34 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 38 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 39 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -28.91 324.12 -8.92 -37.82 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.25 Total: 2.50 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.77 Total: -17.49 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.32 Total: -40.75 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.08 Total: -2.94 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.91 -8.92 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600584079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.414 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds