Wall clock time and date at job start Mon Mar 30 2020 19:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.34394 * 126.51709 * 34.68692 * 4 2 1 6 6 N 1.34367 * 108.34122 * 179.89751 * 5 4 2 7 7 C 1.31265 * 109.30686 * 0.37370 * 6 5 4 8 8 S 1.76204 * 125.80043 * 179.76811 * 7 6 5 9 9 C 1.80995 * 100.00085 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46903 * 300.00160 * 10 9 8 12 12 C 1.53001 * 109.46904 * 59.99964 * 10 9 8 13 13 C 1.50697 * 109.47306 * 179.97438 * 10 9 8 14 14 H 1.08008 * 119.99901 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00028 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99871 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47537 * 89.99712 * 17 15 13 19 19 H 1.48502 * 109.47284 * 210.00385 * 17 15 13 20 20 H 1.48508 * 109.47059 * 329.99816 * 17 15 13 21 21 N 1.36116 * 108.39723 * 359.77111 * 7 6 5 22 22 H 0.96995 * 126.50270 * 180.02562 * 21 7 6 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.07992 * 125.82895 * 0.02562 * 5 4 2 31 31 H 1.08996 * 109.46944 * 300.00057 * 9 8 7 32 32 H 1.09006 * 109.47072 * 59.99954 * 9 8 7 33 33 H 1.08997 * 109.47508 * 59.99926 * 11 10 9 34 34 H 1.08998 * 109.46817 * 179.97438 * 11 10 9 35 35 H 1.09006 * 109.47159 * 299.99824 * 11 10 9 36 36 H 1.08996 * 109.47172 * 59.99903 * 12 10 9 37 37 H 1.09004 * 109.46553 * 180.02562 * 12 10 9 38 38 H 1.08997 * 109.47137 * 299.99847 * 12 10 9 39 39 H 0.97001 * 119.99849 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.4617 -0.7032 -2.4471 6 7 2.2134 -1.4524 -3.2712 7 6 3.2359 -1.9368 -2.6057 8 16 4.4929 -2.9814 -3.2642 9 6 3.9228 -3.1180 -4.9766 10 6 4.8875 -4.0051 -5.7661 11 6 6.2860 -3.3851 -5.7421 12 6 4.9356 -5.3967 -5.1320 13 6 4.4125 -4.1194 -7.1917 14 1 3.5122 -3.6106 -7.5034 15 6 5.1271 -4.8736 -8.0981 16 7 6.2236 -5.4927 -7.7186 17 14 4.5387 -5.0147 -9.8653 18 1 5.1389 -3.9245 -10.6755 19 1 4.9507 -6.3288 -10.4208 20 1 3.0584 -4.9030 -9.9045 21 7 3.1601 -1.4952 -1.3204 22 1 3.7826 -1.6951 -0.6039 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 0.5549 -0.1824 -2.7169 31 1 2.9263 -3.5593 -4.9936 32 1 3.8889 -2.1266 -5.4285 33 1 6.6294 -3.3028 -4.7109 34 1 6.9734 -4.0173 -6.3041 35 1 6.2518 -2.3936 -6.1939 36 1 3.9393 -5.8384 -5.1490 37 1 5.6233 -6.0285 -5.6942 38 1 5.2790 -5.3144 -4.1008 39 1 6.7262 -6.0236 -8.3562 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600584079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:14 Heat of formation + Delta-G solvation = 13.522195 kcal Electronic energy + Delta-G solvation = -18110.874839 eV Core-core repulsion = 15372.084486 eV Total energy + Delta-G solvation = -2738.790353 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.84677 -37.89631 -36.44515 -33.63805 -33.35772 -29.78967 -28.00940 -27.86648 -27.59497 -27.15338 -23.82688 -22.89470 -21.21650 -20.90130 -19.05043 -17.94071 -17.01284 -16.64505 -16.27086 -15.61473 -15.35387 -15.11204 -14.95742 -14.72940 -14.52200 -13.90561 -13.86349 -13.27131 -13.19368 -12.96198 -12.70755 -12.61247 -12.40453 -12.24708 -12.10385 -12.08517 -11.98078 -11.70603 -11.47915 -11.30651 -11.08169 -10.97219 -10.57503 -10.41948 -10.11467 -8.25891 -8.01537 -6.18326 0.37043 0.89748 1.34517 1.43809 1.46507 1.55303 2.01940 2.32354 2.47455 3.21610 3.72709 3.93902 4.18061 4.22912 4.30063 4.35894 4.45604 4.53199 4.73334 4.79399 4.85166 4.99449 5.00514 5.03643 5.11550 5.15670 5.17369 5.18262 5.38127 5.44125 5.48013 5.64313 5.66497 5.68491 6.09694 6.18786 6.26836 6.41484 6.84971 6.92335 7.49066 8.97795 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039474 B = 0.003919 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.160698 B = 7142.126806 C = 7508.894651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.013 4.013 3 C -0.141 4.141 4 C 0.004 3.996 5 C -0.043 4.043 6 N -0.524 5.524 7 C 0.172 3.828 8 S -0.025 6.025 9 C -0.049 4.049 10 C 0.071 3.929 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.525 4.525 14 H 0.046 0.954 15 C 0.027 3.973 16 N -0.902 5.902 17 Si 0.949 3.051 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.274 1.274 21 N -0.546 5.546 22 H 0.432 0.568 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.182 0.818 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 10.177 17.341 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.198 4.198 4 C -0.114 4.114 5 C -0.192 4.192 6 N -0.247 5.247 7 C -0.200 4.200 8 S 0.207 5.793 9 C -0.198 4.198 10 C 0.069 3.931 11 C -0.181 4.181 12 C -0.181 4.181 13 C -0.565 4.565 14 H 0.065 0.935 15 C -0.172 4.172 16 N -0.540 5.540 17 Si 0.775 3.225 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.199 1.199 21 N -0.154 5.154 22 H 0.272 0.728 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.199 0.801 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.100 9.444 16.939 20.331 hybrid contribution -0.847 0.342 -0.835 1.238 sum -6.947 9.786 16.104 20.085 Atomic orbital electron populations 1.21812 0.92278 1.02291 1.03384 1.19712 0.97071 0.95269 0.91284 1.21842 1.00691 0.94189 1.03094 1.21913 0.89836 1.00224 0.99460 1.22421 1.02531 1.04121 0.90123 1.70772 1.05261 1.14900 1.33774 1.25418 1.02670 1.06425 0.85438 1.85194 1.26870 1.56200 1.11052 1.23565 1.02333 1.03196 0.90750 1.18070 0.91133 0.91120 0.92769 1.21746 0.99228 0.98828 0.98339 1.21743 0.99850 0.99201 0.97337 1.21284 1.09783 1.30618 0.94809 0.93526 1.25500 0.95010 0.94969 1.01763 1.69922 1.16504 1.32243 1.35366 0.85702 0.78549 0.77373 0.80860 1.20364 1.20724 1.19927 1.43272 1.22907 1.39156 1.10030 0.72759 0.93010 0.92026 0.89763 0.89067 0.89726 0.93421 0.92719 0.80080 0.91654 0.91657 0.94629 0.91681 0.95844 0.95818 0.91696 0.94631 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.78 71.98 0.63 -1.08 16 2 C -0.01 -0.20 3.38 -11.54 -0.04 -0.23 16 3 C -0.14 -1.79 9.18 71.98 0.66 -1.13 16 4 C 0.00 0.10 6.17 40.76 0.25 0.35 16 5 C -0.04 -1.26 11.03 83.43 0.92 -0.34 16 6 N -0.52 -19.74 10.60 -196.46 -2.08 -21.82 16 7 C 0.17 5.96 8.26 179.69 1.48 7.44 16 8 S -0.02 -0.90 19.36 -56.49 -1.09 -2.00 16 9 C -0.05 -2.20 4.14 71.98 0.30 -1.91 16 10 C 0.07 3.50 0.52 -52.93 -0.03 3.47 16 11 C -0.12 -5.93 8.01 71.98 0.58 -5.35 16 12 C -0.12 -5.92 8.01 71.98 0.58 -5.34 16 13 C -0.53 -28.73 8.01 25.60 0.21 -28.52 16 14 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 15 C 0.03 1.48 5.15 84.66 0.44 1.91 16 16 N -0.90 -49.62 9.35 21.45 0.20 -49.42 16 17 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 N -0.55 -14.14 6.24 -182.32 -1.14 -15.28 16 22 H 0.43 8.36 8.96 -92.71 -0.83 7.53 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.78 7.30 -2.39 -0.02 0.76 16 25 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.18 4.43 7.37 -2.91 -0.02 4.40 16 31 H 0.06 3.05 8.14 -2.40 -0.02 3.03 16 32 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.03 1.52 6.91 -2.39 -0.02 1.51 16 34 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 35 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 38 H 0.03 1.52 6.91 -2.39 -0.02 1.51 16 39 H 0.26 13.76 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -62.56 324.12 4.09 -58.47 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.20 Total: 15.33 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 5.97 Total: -30.74 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -3.02 Total: -86.52 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -1.09 Total: -2.00 kcal Total: -62.56 4.09 -58.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600584079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.990 kcal (2) G-P(sol) polarization free energy of solvation -62.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds