Wall clock time and date at job start Mon Mar 30 2020 19:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29026 * 124.91557 * 2 1 4 4 C 1.31782 * 117.12477 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74799 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47212 * 305.01839 * 5 4 3 7 7 N 1.46900 * 109.47059 * 180.02562 * 6 5 4 8 8 C 1.46897 * 110.99727 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46940 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47448 * 304.99654 * 9 8 7 11 11 C 1.53001 * 109.47080 * 65.00472 * 9 8 7 12 12 C 1.53002 * 109.46893 * 184.99774 * 9 8 7 13 13 C 1.50706 * 109.47153 * 174.99718 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 C 1.33640 * 114.49922 * 0.22561 * 4 3 2 22 22 S 1.70975 * 124.91874 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47475 * 89.99951 * 1 2 3 24 24 H 1.09005 * 109.46947 * 209.99596 * 1 2 3 25 25 H 1.09004 * 109.47238 * 330.00199 * 1 2 3 26 26 H 1.09008 * 109.46884 * 185.01788 * 5 4 3 27 27 H 1.08999 * 109.47507 * 65.02573 * 5 4 3 28 28 H 1.08995 * 109.46999 * 60.00043 * 6 5 4 29 29 H 1.09003 * 109.46925 * 300.00280 * 6 5 4 30 30 H 1.00902 * 110.99874 * 303.95251 * 7 6 5 31 31 H 1.08997 * 109.47423 * 60.00043 * 8 7 6 32 32 H 1.09001 * 109.47481 * 299.99662 * 8 7 6 33 33 H 1.09001 * 109.46866 * 299.99538 * 11 9 8 34 34 H 1.09000 * 109.47309 * 59.99633 * 11 9 8 35 35 H 1.09000 * 109.46932 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47178 * 55.00508 * 12 9 8 37 37 H 1.08993 * 109.47411 * 295.00191 * 12 9 8 38 38 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 39 39 H 1.08007 * 126.03431 * 179.77050 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0246 -0.0012 6 6 4.2325 2.9500 -1.1826 7 7 5.1877 4.0661 -1.1835 8 6 4.9317 4.9771 -2.3071 9 6 5.9436 6.1242 -2.2743 10 1 5.9068 6.6135 -1.3010 11 6 7.3498 5.5709 -2.5142 12 6 5.6011 7.1379 -3.3679 13 6 6.5212 8.3263 -3.2575 14 1 7.2752 8.3554 -2.4848 15 6 6.4006 9.3763 -4.1428 16 7 5.4859 9.3384 -5.0871 17 14 7.5416 10.8490 -4.0064 18 1 6.9325 11.8658 -3.1119 19 1 8.8461 10.4142 -3.4457 20 1 7.7533 11.4377 -5.3532 21 6 3.9353 -0.4006 -0.0058 22 16 2.4856 -1.4019 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 5.5448 1.6353 -0.0914 27 1 4.4375 2.5830 0.9303 28 1 3.2185 3.3393 -1.0923 29 1 4.3258 2.3916 -2.1140 30 1 5.1666 4.5608 -0.3043 31 1 3.9226 5.3808 -2.2249 32 1 5.0297 4.4324 -3.2461 33 1 7.5938 4.8488 -1.7351 34 1 7.3865 5.0816 -3.4875 35 1 8.0707 6.3881 -2.4904 36 1 4.5684 7.4658 -3.2489 37 1 5.7241 6.6727 -4.3459 38 1 4.8935 8.5736 -5.1582 39 1 4.9545 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:32 Heat of formation + Delta-G solvation = 11.690209 kcal Electronic energy + Delta-G solvation = -17369.156848 eV Core-core repulsion = 14630.287054 eV Total energy + Delta-G solvation = -2738.869794 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20313 -37.08420 -34.77869 -33.13624 -31.94805 -29.75105 -28.27162 -26.38853 -25.22235 -23.48354 -22.37210 -21.87488 -19.96156 -19.29627 -17.72474 -16.65946 -15.81883 -15.44248 -15.33667 -14.52271 -14.33137 -13.98530 -13.74156 -13.61968 -13.40125 -13.03697 -12.72139 -12.53418 -12.20697 -11.85791 -11.69301 -11.43383 -11.30618 -11.09045 -10.95352 -10.62077 -10.17484 -10.06302 -9.88429 -9.77325 -9.68038 -9.41054 -8.93938 -8.42626 -8.25800 -8.14051 -6.28870 -3.96629 0.43643 1.07888 1.44832 2.52637 3.47019 3.51011 3.66587 3.77164 4.35283 4.60398 4.67717 4.96287 4.98846 5.06367 5.09220 5.11518 5.44132 5.45574 5.47790 5.56317 5.66614 5.80912 5.88756 5.99666 6.10197 6.11121 6.36507 6.49275 6.63398 6.93268 7.10450 7.15965 7.31271 7.46296 7.50549 7.60671 7.67706 8.31305 8.54801 8.96637 9.74936 11.11686 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.046619 B = 0.002623 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.475255 B =10673.201800 C =11043.433010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.050 3.950 3 N -0.468 5.468 4 C 0.078 3.922 5 C -0.042 4.042 6 C 0.067 3.933 7 N -0.689 5.689 8 C 0.064 3.936 9 C -0.075 4.075 10 H 0.055 0.945 11 C -0.122 4.122 12 C 0.013 3.987 13 C -0.593 4.593 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.917 5.917 17 Si 1.070 2.930 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.285 1.285 21 C -0.259 4.259 22 S 0.104 5.896 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.337 0.663 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.003 0.997 37 H 0.007 0.993 38 H 0.268 0.732 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 -22.930 11.998 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.228 4.228 3 N -0.183 5.183 4 C -0.054 4.054 5 C -0.083 4.083 6 C -0.063 4.063 7 N -0.319 5.319 8 C -0.064 4.064 9 C -0.094 4.094 10 H 0.073 0.927 11 C -0.179 4.179 12 C -0.024 4.024 13 C -0.631 4.631 14 H 0.068 0.932 15 C -0.192 4.192 16 N -0.554 5.554 17 Si 0.899 3.101 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.211 1.211 21 C -0.397 4.397 22 S 0.358 5.642 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.025 0.975 38 H 0.078 0.922 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.858 -22.399 10.973 25.868 hybrid contribution -0.591 -0.436 0.946 1.198 sum -7.449 -22.835 11.919 26.814 Atomic orbital electron populations 1.20459 0.85146 1.04217 1.04037 1.27081 1.01825 0.90862 1.03031 1.66099 1.04661 1.31513 1.16071 1.20309 0.90042 0.94348 1.00657 1.20190 0.95864 0.92496 0.99734 1.21791 0.94298 0.92622 0.97584 1.60524 1.52011 1.12478 1.06893 1.22141 0.97514 0.93481 0.93312 1.21062 0.94142 0.93874 1.00365 0.92672 1.21576 0.96923 0.99674 0.99731 1.19258 0.96269 0.93770 0.93122 1.22064 1.19127 1.04189 1.17711 0.93161 1.25831 0.98883 1.01314 0.93144 1.70746 1.19121 1.33042 1.32503 0.83529 0.75227 0.75257 0.76093 1.21574 1.21497 1.21089 1.26835 1.03080 0.95634 1.14183 1.83919 0.98268 1.13076 1.68956 0.89468 0.90112 0.89179 0.89323 0.90219 0.94564 0.91512 0.84543 0.95843 0.91698 0.93774 0.94300 0.92656 0.97884 0.97494 0.92157 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.00 0.38 -0.12 16 2 C 0.05 0.49 7.39 -13.46 -0.10 0.39 16 3 N -0.47 -5.76 10.34 -8.06 -0.08 -5.85 16 4 C 0.08 0.90 6.08 -84.23 -0.51 0.39 16 5 C -0.04 -0.47 5.97 -27.88 -0.17 -0.64 16 6 C 0.07 0.90 5.59 -3.82 -0.02 0.88 16 7 N -0.69 -10.41 5.96 -113.78 -0.68 -11.08 16 8 C 0.06 1.17 5.07 -3.82 -0.02 1.15 16 9 C -0.08 -1.60 2.48 -90.62 -0.22 -1.83 16 10 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 12 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 13 C -0.59 -17.13 8.41 -34.44 -0.29 -17.42 16 14 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 15 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 16 N -0.92 -28.80 13.65 55.43 0.76 -28.05 16 17 Si 1.07 25.93 29.90 -169.99 -5.08 20.85 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.26 -2.46 11.07 29.12 0.32 -2.13 16 22 S 0.10 0.85 23.18 -107.50 -2.49 -1.64 16 23 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.90 8.03 -51.92 -0.42 0.48 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.34 4.80 8.73 -39.29 -0.34 4.46 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 36 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 37 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 38 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 39 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -32.50 336.15 -9.48 -41.98 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.46 Total: -0.30 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.51 Total: -20.97 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.00 Total: -44.98 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.85 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.50 -9.48 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.669 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds