Wall clock time and date at job start Mon Mar 30 2020 19:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46578 * 2 1 4 4 H 1.08997 * 109.47597 * 305.00099 * 3 2 1 5 5 C 1.50704 * 109.47269 * 184.99982 * 3 2 1 6 6 H 1.07990 * 119.99757 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99796 * 60.00009 * 5 3 2 8 8 N 1.31509 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99763 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47134 * 60.00030 * 9 7 5 11 11 H 1.48500 * 109.46886 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47067 * 299.99608 * 9 7 5 13 13 O 1.45199 * 109.47158 * 65.00107 * 3 2 1 14 14 C 1.34234 * 116.99947 * 269.99827 * 13 3 2 15 15 O 1.20822 * 120.00090 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99997 * 179.72219 * 14 13 3 17 17 C 1.52992 * 109.47263 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47304 * 180.02562 * 17 16 14 19 19 C 1.50708 * 109.47430 * 179.97438 * 18 17 16 20 20 O 1.20762 * 119.99415 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00184 * 179.97438 * 19 18 17 22 22 C 1.53004 * 117.50022 * 223.75063 * 21 19 18 23 23 C 1.52997 * 117.49609 * 155.08927 * 21 19 18 24 24 H 1.08997 * 109.47046 * 299.99354 * 1 2 3 25 25 H 1.08996 * 109.47256 * 60.00501 * 1 2 3 26 26 H 1.09003 * 109.46186 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47046 * 240.00645 * 2 1 3 28 28 H 1.08996 * 109.47256 * 119.99498 * 2 1 3 29 29 H 0.96999 * 119.99995 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47201 * 300.00712 * 16 14 13 31 31 H 1.09001 * 109.46880 * 60.00295 * 16 14 13 32 32 H 1.09001 * 109.47602 * 300.00478 * 17 16 14 33 33 H 1.09001 * 109.46922 * 60.00333 * 17 16 14 34 34 H 1.08998 * 109.47353 * 300.00224 * 18 17 16 35 35 H 1.09006 * 109.47395 * 59.99968 * 18 17 16 36 36 H 1.08998 * 115.54733 * 9.41781 * 21 19 18 37 37 H 1.09003 * 117.49211 * 359.97438 * 22 21 19 38 38 H 1.08997 * 117.49797 * 145.02443 * 22 21 19 39 39 H 1.08998 * 117.49571 * 214.97851 * 23 21 19 40 40 H 1.08992 * 117.50112 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3377 -2.1733 9 14 6.0050 0.8805 -1.3811 10 1 6.5967 0.1458 -0.2343 11 1 6.3979 0.2162 -2.6498 12 1 6.5003 2.2805 -1.3808 13 8 1.6557 2.0917 1.2407 14 6 0.4725 2.7254 1.2560 15 8 -0.2195 2.7369 0.2656 16 6 0.0041 3.4167 2.5105 17 6 -1.3634 4.0555 2.2605 18 6 -1.8387 4.7578 3.5339 19 6 -3.1855 5.3876 3.2876 20 8 -3.7112 5.2847 2.2052 21 6 -3.8768 6.1446 4.3921 22 6 -5.3738 5.8971 4.5888 23 6 -4.8886 7.2183 3.9868 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8293 -0.0600 -2.9502 30 1 -0.0764 2.6889 3.3179 31 1 0.7204 4.1898 2.7883 32 1 -1.2825 4.7833 1.4532 33 1 -2.0800 3.2826 1.9824 34 1 -1.9197 4.0303 4.3416 35 1 -1.1220 5.5307 3.8117 36 1 -3.2760 6.3297 5.2826 37 1 -5.8587 5.1870 3.9189 38 1 -5.7580 5.9198 5.6086 39 1 -4.9538 8.1095 4.6109 40 1 -5.0540 7.3773 2.9213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:33 Heat of formation + Delta-G solvation = -124.808274 kcal Electronic energy + Delta-G solvation = -20120.525422 eV Core-core repulsion = 16900.690988 eV Total energy + Delta-G solvation = -3219.834435 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15402 -39.52119 -36.49738 -35.93200 -34.16914 -33.44977 -31.34258 -29.39114 -27.24102 -25.19336 -23.20864 -22.81317 -21.94500 -20.35703 -19.54712 -19.23944 -17.17082 -16.69277 -16.55231 -16.10562 -15.51778 -15.19255 -15.08521 -14.65748 -14.20837 -13.79883 -13.05472 -12.94084 -12.80355 -12.36042 -12.13921 -11.92815 -11.76091 -11.48870 -11.38712 -11.16379 -11.13663 -11.00693 -10.91536 -10.87140 -10.72737 -10.62145 -10.26732 -9.80564 -9.74954 -9.47904 -9.30782 -8.77357 -8.42755 -6.16111 -4.23342 1.68488 3.10086 3.27136 3.30593 3.32756 3.48309 3.52059 3.88098 4.35394 4.40662 4.53666 4.69214 4.81767 4.97419 5.01649 5.15499 5.22565 5.26869 5.43817 5.46553 5.56034 5.62358 5.70375 5.72987 5.99892 6.14265 6.26181 6.33225 6.38754 6.50175 6.90778 7.01303 7.20748 7.31723 7.37859 7.64494 7.77462 8.00333 8.19688 8.69081 8.94044 9.41864 10.90632 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043157 B = 0.003116 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.644739 B = 8982.654361 C = 9273.340484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.359 6.359 14 C 0.448 3.552 15 O -0.516 6.516 16 C -0.116 4.116 17 C -0.100 4.100 18 C -0.164 4.164 19 C 0.381 3.619 20 O -0.449 6.449 21 C -0.223 4.223 22 C -0.152 4.152 23 C -0.154 4.154 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 9.488 15.024 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.275 6.275 14 C 0.291 3.709 15 O -0.406 6.406 16 C -0.154 4.154 17 C -0.138 4.138 18 C -0.202 4.202 19 C 0.256 3.744 20 O -0.322 6.322 21 C -0.242 4.242 22 C -0.189 4.189 23 C -0.191 4.191 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.429 9.300 13.927 20.855 hybrid contribution 1.030 -0.098 -0.045 1.036 sum -11.399 9.202 13.882 20.183 Atomic orbital electron populations 1.21855 0.98367 0.98922 1.00791 1.22010 0.92628 0.99412 1.03269 1.20644 0.94916 0.88776 0.78847 0.93574 1.21015 0.89775 1.38983 1.06210 0.91436 1.24891 0.99207 0.94803 0.95087 1.69882 1.35449 1.37815 1.09445 0.86343 0.83945 0.78454 0.77447 1.19959 1.21046 1.20014 1.86466 1.34496 1.62531 1.44026 1.23280 0.80805 0.77090 0.89747 1.90620 1.55483 1.58359 1.36117 1.21330 0.97885 1.00805 0.95380 1.21208 0.95280 1.00775 0.96531 1.22067 0.95762 1.01679 1.00660 1.23810 0.87372 0.76290 0.86904 1.90431 1.65196 1.50620 1.25947 1.22913 0.93794 1.05431 1.02052 1.22952 0.92860 1.00226 1.02822 1.22969 1.00778 0.92661 1.02721 0.94955 0.92816 0.94882 0.87410 0.94046 0.92350 0.88428 0.88336 0.90462 0.90511 0.88099 0.88097 0.85689 0.88059 0.87811 0.87911 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.56 37.16 0.32 -2.88 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 5.96 2.25 -27.88 -0.06 5.89 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.75 8.90 -34.44 -0.31 -15.06 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.40 11.29 55.43 0.63 -24.77 16 9 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.36 -8.55 9.81 -39.27 -0.39 -8.94 16 14 C 0.45 9.26 6.41 36.01 0.23 9.49 16 15 O -0.52 -12.14 13.12 -18.75 -0.25 -12.39 16 16 C -0.12 -1.62 5.81 -27.89 -0.16 -1.78 16 17 C -0.10 -1.33 3.79 -26.74 -0.10 -1.43 16 18 C -0.16 -1.47 5.64 -27.88 -0.16 -1.62 16 19 C 0.38 3.99 6.92 -29.03 -0.20 3.79 16 20 O -0.45 -6.56 16.05 6.00 0.10 -6.46 16 21 C -0.22 -1.68 6.12 -91.77 -0.56 -2.24 16 22 C -0.15 -1.07 10.14 -26.69 -0.27 -1.34 16 23 C -0.15 -1.13 10.05 -26.69 -0.27 -1.39 16 24 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 25 H 0.05 1.27 7.80 -51.93 -0.40 0.87 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 33 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -32.78 335.02 -8.08 -40.86 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.42 Total: 0.99 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.78 Total: -10.50 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.63 Total: -24.77 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.53 Total: -27.79 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.78 -8.08 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.946 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds