Wall clock time and date at job start Mon Mar 30 2020 19:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46578 * 2 1 4 4 H 1.08997 * 109.47597 * 305.00099 * 3 2 1 5 5 C 1.50704 * 109.47269 * 184.99982 * 3 2 1 6 6 H 1.07990 * 119.99757 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99796 * 60.00009 * 5 3 2 8 8 N 1.31509 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99763 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47134 * 60.00030 * 9 7 5 11 11 H 1.48500 * 109.46886 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47067 * 299.99608 * 9 7 5 13 13 O 1.45199 * 109.47158 * 65.00107 * 3 2 1 14 14 C 1.34234 * 116.99947 * 269.99827 * 13 3 2 15 15 O 1.20822 * 120.00090 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99997 * 179.72219 * 14 13 3 17 17 C 1.52992 * 109.47263 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47304 * 180.02562 * 17 16 14 19 19 C 1.50708 * 109.47430 * 179.97438 * 18 17 16 20 20 O 1.20762 * 119.99415 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00184 * 179.97438 * 19 18 17 22 22 C 1.53004 * 117.50022 * 223.75063 * 21 19 18 23 23 C 1.52997 * 117.49609 * 155.08927 * 21 19 18 24 24 H 1.08997 * 109.47046 * 299.99354 * 1 2 3 25 25 H 1.08996 * 109.47256 * 60.00501 * 1 2 3 26 26 H 1.09003 * 109.46186 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47046 * 240.00645 * 2 1 3 28 28 H 1.08996 * 109.47256 * 119.99498 * 2 1 3 29 29 H 0.96999 * 119.99995 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47201 * 300.00712 * 16 14 13 31 31 H 1.09001 * 109.46880 * 60.00295 * 16 14 13 32 32 H 1.09001 * 109.47602 * 300.00478 * 17 16 14 33 33 H 1.09001 * 109.46922 * 60.00333 * 17 16 14 34 34 H 1.08998 * 109.47353 * 300.00224 * 18 17 16 35 35 H 1.09006 * 109.47395 * 59.99968 * 18 17 16 36 36 H 1.08998 * 115.54733 * 9.41781 * 21 19 18 37 37 H 1.09003 * 117.49211 * 359.97438 * 22 21 19 38 38 H 1.08997 * 117.49797 * 145.02443 * 22 21 19 39 39 H 1.08998 * 117.49571 * 214.97851 * 23 21 19 40 40 H 1.08992 * 117.50112 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8891 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3377 -2.1733 9 14 6.0050 0.8805 -1.3811 10 1 6.5967 0.1458 -0.2343 11 1 6.3979 0.2162 -2.6498 12 1 6.5003 2.2805 -1.3808 13 8 1.6557 2.0917 1.2407 14 6 0.4725 2.7254 1.2560 15 8 -0.2195 2.7369 0.2656 16 6 0.0041 3.4167 2.5105 17 6 -1.3634 4.0555 2.2605 18 6 -1.8387 4.7578 3.5339 19 6 -3.1855 5.3876 3.2876 20 8 -3.7112 5.2847 2.2052 21 6 -3.8768 6.1446 4.3921 22 6 -5.3738 5.8971 4.5888 23 6 -4.8886 7.2183 3.9868 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8293 -0.0600 -2.9502 30 1 -0.0764 2.6889 3.3179 31 1 0.7204 4.1898 2.7883 32 1 -1.2825 4.7833 1.4532 33 1 -2.0800 3.2826 1.9824 34 1 -1.9197 4.0303 4.3416 35 1 -1.1220 5.5307 3.8117 36 1 -3.2760 6.3297 5.2826 37 1 -5.8587 5.1870 3.9189 38 1 -5.7580 5.9198 5.6086 39 1 -4.9538 8.1095 4.6109 40 1 -5.0540 7.3773 2.9213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:32 Heat of formation + Delta-G solvation = -143.455689 kcal Electronic energy + Delta-G solvation = -20121.334035 eV Core-core repulsion = 16900.690988 eV Total energy + Delta-G solvation = -3220.643047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40064 -40.85975 -37.82137 -37.07005 -35.50330 -35.30305 -33.36235 -30.49223 -29.21974 -26.27463 -25.10241 -23.35124 -23.16210 -21.96299 -21.06284 -20.21916 -18.87812 -18.42892 -17.68477 -17.47322 -17.04553 -16.42014 -16.34806 -15.92759 -15.35186 -15.01698 -14.82218 -14.62843 -13.92732 -13.66141 -13.41142 -13.29505 -13.20599 -13.04130 -12.84781 -12.74505 -12.57314 -12.45925 -12.38942 -12.14630 -11.78267 -11.75632 -11.54173 -11.45397 -11.43384 -11.22380 -10.82110 -10.54095 -10.50790 -8.27443 -6.44913 0.91754 1.40984 1.44603 1.45842 1.53445 2.08601 2.43142 2.92613 2.98944 3.02261 3.76459 3.86639 3.96748 4.03228 4.05344 4.14111 4.25396 4.35056 4.37929 4.51935 4.60601 4.64220 4.70304 4.72124 4.81194 4.85266 4.99106 5.06717 5.10521 5.11770 5.19133 5.20602 5.32261 5.39835 5.51864 5.66987 5.99704 6.17459 6.61109 6.62203 7.05281 7.28012 8.79224 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043157 B = 0.003116 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.644739 B = 8982.654361 C = 9273.340484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.223 3.777 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.983 3.017 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.268 1.268 13 O -0.365 6.365 14 C 0.436 3.564 15 O -0.553 6.553 16 C -0.101 4.101 17 C -0.096 4.096 18 C -0.156 4.156 19 C 0.376 3.624 20 O -0.506 6.506 21 C -0.221 4.221 22 C -0.150 4.150 23 C -0.161 4.161 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.270 0.730 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 10.048 18.282 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.193 1.193 13 O -0.282 6.282 14 C 0.281 3.719 15 O -0.444 6.444 16 C -0.138 4.138 17 C -0.134 4.134 18 C -0.192 4.192 19 C 0.256 3.744 20 O -0.383 6.383 21 C -0.240 4.240 22 C -0.187 4.187 23 C -0.197 4.197 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.572 9.871 17.222 22.977 hybrid contribution 0.678 -0.235 -1.081 1.297 sum -10.894 9.636 16.141 21.727 Atomic orbital electron populations 1.21705 0.96422 1.00502 0.99993 1.21851 0.94302 0.98174 1.02338 1.20324 0.94536 0.89283 0.78872 0.98113 1.21329 0.90550 1.39967 1.06947 0.91406 1.25856 1.04425 0.93879 0.94349 1.70020 1.37604 1.37985 1.09861 0.85237 0.77497 0.78799 0.77905 1.18665 1.20358 1.19341 1.86459 1.36407 1.63138 1.42179 1.24750 0.79269 0.76168 0.91683 1.90613 1.56098 1.59499 1.38210 1.21510 0.98309 1.01731 0.92294 1.21118 0.94495 0.99567 0.98248 1.22103 0.95351 1.02897 0.98864 1.24480 0.87818 0.75416 0.86729 1.90432 1.66644 1.52902 1.28320 1.23018 0.94152 1.04824 1.01969 1.23029 0.92459 0.99398 1.03794 1.23028 1.01022 0.93829 1.01863 0.94253 0.95078 0.91980 0.89761 0.93313 0.92077 0.84839 0.85132 0.93528 0.93262 0.84632 0.84740 0.82094 0.90132 0.85030 0.85356 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.56 71.98 0.62 -5.26 16 2 C -0.13 -6.64 5.49 30.60 0.17 -6.48 16 3 C 0.22 12.46 2.25 29.85 0.07 12.52 16 4 H 0.00 0.07 7.16 -2.39 -0.02 0.05 16 5 C -0.55 -31.67 8.90 25.60 0.23 -31.44 16 6 H 0.07 3.79 7.81 -2.92 -0.02 3.76 16 7 C 0.01 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -53.62 11.29 21.45 0.24 -53.38 16 9 Si 0.98 43.25 29.54 68.60 2.03 45.27 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 O -0.37 -17.56 9.81 -51.46 -0.50 -18.07 16 14 C 0.44 18.14 6.41 71.24 0.46 18.60 16 15 O -0.55 -27.19 13.12 21.98 0.29 -26.90 16 16 C -0.10 -2.59 5.81 29.85 0.17 -2.41 16 17 C -0.10 -2.48 3.79 30.59 0.12 -2.37 16 18 C -0.16 -2.28 5.64 29.85 0.17 -2.11 16 19 C 0.38 7.42 6.92 29.10 0.20 7.63 16 20 O -0.51 -15.42 16.05 -1.45 -0.02 -15.44 16 21 C -0.22 -2.73 6.12 -11.54 -0.07 -2.80 16 22 C -0.15 -1.83 10.14 30.62 0.31 -1.52 16 23 C -0.16 -2.11 10.05 30.62 0.31 -1.80 16 24 H 0.04 1.70 6.06 -2.39 -0.01 1.68 16 25 H 0.03 1.52 7.80 -2.39 -0.02 1.50 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.08 4.76 5.95 -2.39 -0.01 4.75 16 28 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 33 H 0.05 1.52 8.05 -2.39 -0.02 1.50 16 34 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.44 7.89 -2.39 -0.02 1.42 16 Total: -1.00 -76.92 335.02 6.23 -70.69 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.01 Total: 14.02 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.19 Total: -16.19 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.24 Total: -53.38 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -0.24 Total: -60.41 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -76.92 6.23 -70.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.762 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds