Wall clock time and date at job start Mon Mar 30 2020 19:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.63748 * 2 1 4 4 O 1.20829 * 119.99697 * 120.42636 * 3 2 1 5 5 O 1.34222 * 120.00215 * 300.42153 * 3 2 1 6 6 C 1.45200 * 117.00184 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47458 * 180.02562 * 6 5 3 8 8 O 1.42899 * 109.46889 * 65.00274 * 7 6 5 9 9 C 1.42905 * 113.99778 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46972 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00309 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00236 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47160 * 89.99730 * 14 12 10 16 16 H 1.48503 * 109.47061 * 209.99752 * 14 12 10 17 17 H 1.48500 * 109.46598 * 329.99398 * 14 12 10 18 18 C 1.53026 * 109.81638 * 239.47582 * 2 1 3 19 19 C 1.50067 * 110.14654 * 289.64242 * 18 2 1 20 20 C 1.29449 * 124.07768 * 342.87482 * 19 18 2 21 21 C 1.50066 * 124.07039 * 0.46229 * 20 19 18 22 22 C 1.53024 * 110.15303 * 342.86988 * 21 20 19 23 23 H 1.08995 * 109.47399 * 60.00006 * 1 2 3 24 24 H 1.09002 * 109.47101 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47309 * 299.99313 * 1 2 3 26 26 H 1.09002 * 109.46912 * 60.00336 * 6 5 3 27 27 H 1.09002 * 109.47592 * 300.00455 * 6 5 3 28 28 H 1.08997 * 109.46848 * 305.00193 * 7 6 5 29 29 H 1.08997 * 109.47286 * 185.00291 * 7 6 5 30 30 H 1.09004 * 109.47054 * 299.99711 * 9 8 7 31 31 H 1.09000 * 109.47187 * 59.99767 * 9 8 7 32 32 H 0.96992 * 120.00510 * 180.02562 * 13 12 10 33 33 H 1.08993 * 109.36068 * 49.85403 * 18 2 1 34 34 H 1.09004 * 109.35774 * 169.43585 * 18 2 1 35 35 H 1.08003 * 117.96384 * 162.89067 * 19 18 2 36 36 H 1.07996 * 117.95934 * 180.44299 * 20 19 18 37 37 H 1.09001 * 109.35675 * 222.66420 * 21 20 19 38 38 H 1.09005 * 109.24770 * 103.01449 * 21 20 19 39 39 H 1.08998 * 109.64059 * 289.75870 * 22 21 20 40 40 H 1.08999 * 109.64401 * 169.12018 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0364 1.4193 0.0000 4 8 2.7386 1.8102 0.9023 5 8 1.7076 2.2493 -1.0023 6 6 2.2307 3.6022 -0.9365 7 6 1.7526 4.3938 -2.1554 8 8 0.3315 4.5350 -2.1040 9 6 -0.2203 5.2628 -3.2031 10 6 -1.7167 5.3497 -3.0474 11 1 -2.1981 4.8950 -2.1942 12 6 -2.4710 6.0105 -3.9936 13 7 -3.7770 6.0860 -3.8580 14 14 -1.6382 6.7976 -5.4689 15 1 -1.5621 5.8130 -6.5779 16 1 -2.4235 7.9788 -5.9088 17 1 -0.2673 7.2267 -5.0928 18 6 2.0487 -0.7312 -1.2401 19 6 1.7784 -2.2027 -1.1234 20 6 1.4898 -2.8012 -0.0125 21 6 1.3754 -2.1055 1.3123 22 6 2.0457 -0.7315 1.2458 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 3.3202 3.5704 -0.9280 27 1 1.8743 4.0858 -0.0270 28 1 2.0324 3.8634 -3.0656 29 1 2.2161 5.3803 -2.1526 30 1 0.2023 6.2674 -3.2225 31 1 0.0185 4.7501 -4.1349 32 1 -4.3077 6.5505 -4.5238 33 1 1.5475 -0.3409 -2.1258 34 1 3.1223 -0.5674 -1.3335 35 1 1.8280 -2.7996 -2.0221 36 1 1.3205 -3.8675 -0.0409 37 1 1.8615 -2.7078 2.0798 38 1 0.3219 -1.9819 1.5634 39 1 3.1266 -0.8541 1.1774 40 1 1.7946 -0.1577 2.1378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838182716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:52 Heat of formation + Delta-G solvation = -131.236562 kcal Electronic energy + Delta-G solvation = -20601.665370 eV Core-core repulsion = 17381.552184 eV Total energy + Delta-G solvation = -3220.113186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90835 -38.75715 -37.13650 -36.06398 -32.78501 -32.58750 -31.09498 -30.18904 -27.60915 -27.27331 -24.22886 -23.39285 -22.05962 -21.82996 -20.24851 -17.76319 -17.23963 -17.11238 -16.78000 -16.37371 -15.40208 -15.27878 -14.94908 -14.61049 -14.36624 -14.04207 -13.58750 -13.45473 -13.16797 -12.72614 -12.50788 -12.45262 -12.40578 -11.92155 -11.77797 -11.71277 -11.20122 -11.11815 -10.91546 -10.85610 -10.68407 -10.49069 -10.44695 -10.05965 -9.88736 -9.22108 -9.20483 -8.92024 -8.52150 -6.13402 -4.12832 2.08014 2.28170 2.75072 3.23054 3.30103 3.30844 4.29977 4.33311 4.41636 4.47624 4.61832 4.89932 4.91584 5.06760 5.10095 5.15402 5.17713 5.27460 5.37721 5.46301 5.52694 5.61263 5.68205 5.72273 5.75519 5.80309 5.84941 5.95154 5.98829 6.00431 6.26293 6.42759 6.54122 6.58843 6.72992 6.95153 7.55883 7.85137 7.94901 8.62028 8.97890 9.45328 10.99609 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.003815 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.603065 B = 7338.559918 C = 7770.447954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.470 3.530 4 O -0.516 6.516 5 O -0.337 6.337 6 C 0.072 3.928 7 C 0.058 3.942 8 O -0.375 6.375 9 C 0.168 3.832 10 C -0.520 4.520 11 H 0.083 0.917 12 C 0.073 3.927 13 N -0.895 5.895 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.266 1.266 18 C -0.081 4.081 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.092 4.092 22 C -0.099 4.099 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.004 0.996 31 H 0.001 0.999 32 H 0.267 0.733 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.526 -15.536 6.361 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 C 0.313 3.687 4 O -0.404 6.404 5 O -0.252 6.252 6 C -0.001 4.001 7 C -0.020 4.020 8 O -0.294 6.294 9 C 0.093 3.907 10 C -0.558 4.558 11 H 0.101 0.899 12 C -0.129 4.129 13 N -0.533 5.533 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.118 4.118 19 C -0.165 4.165 20 C -0.177 4.177 21 C -0.128 4.128 22 C -0.137 4.137 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.440 -15.373 6.665 21.480 hybrid contribution 0.597 0.714 -1.056 1.407 sum 14.037 -14.659 5.609 21.057 Atomic orbital electron populations 1.21938 0.90999 1.03409 1.03882 1.20569 0.98466 0.87632 0.98342 1.23623 0.77183 0.88450 0.79430 1.90626 1.35920 1.77471 1.36428 1.86598 1.68881 1.23455 1.46286 1.23174 0.97760 0.78815 1.00383 1.22390 0.86015 0.97451 0.96102 1.87980 1.16526 1.76692 1.48226 1.20635 0.95439 0.89911 0.84694 1.20877 0.88530 1.35772 1.10582 0.89922 1.24762 0.94723 0.95668 0.97756 1.69871 1.04716 1.42909 1.35803 0.86851 0.79997 0.79560 0.83337 1.19875 1.20752 1.19119 1.20499 1.01461 0.92797 0.96996 1.21966 1.00860 0.95551 0.98139 1.22055 1.01467 0.99621 0.94536 1.20527 1.01541 0.95086 0.95688 1.21549 1.00628 0.95178 0.96311 0.90408 0.90668 0.91956 0.90404 0.90404 0.93066 0.91879 0.97866 0.98181 0.92328 0.89145 0.90519 0.87391 0.87770 0.90658 0.90190 0.91056 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 7.76 37.16 0.29 -1.43 16 2 C -0.05 -0.58 0.72 -155.44 -0.11 -0.69 16 3 C 0.47 7.07 6.54 36.01 0.24 7.31 16 4 O -0.52 -8.66 15.65 -18.75 -0.29 -8.95 16 5 O -0.34 -5.55 10.04 -42.00 -0.42 -5.97 16 6 C 0.07 1.13 5.84 37.16 0.22 1.34 16 7 C 0.06 1.00 6.33 37.16 0.24 1.24 16 8 O -0.38 -8.76 10.30 -38.80 -0.40 -9.16 16 9 C 0.17 4.25 4.76 36.01 0.17 4.42 16 10 C -0.52 -15.46 9.99 -34.44 -0.34 -15.80 16 11 H 0.08 2.70 8.06 -52.48 -0.42 2.27 16 12 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 13 N -0.89 -27.52 13.96 55.43 0.77 -26.75 16 14 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 18 C -0.08 -0.84 4.83 -28.18 -0.14 -0.97 16 19 C -0.15 -1.31 9.41 -35.90 -0.34 -1.65 16 20 C -0.16 -1.31 9.16 -35.90 -0.33 -1.64 16 21 C -0.09 -0.75 5.48 -28.18 -0.15 -0.91 16 22 C -0.10 -1.03 4.32 -26.51 -0.11 -1.14 16 23 H 0.08 1.05 8.12 -51.93 -0.42 0.62 16 24 H 0.07 0.75 5.71 -51.93 -0.30 0.46 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 31 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 0.98 8.12 -51.93 -0.42 0.55 16 34 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.11 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.63 6.92 -51.93 -0.36 0.27 16 39 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.08 0.85 7.91 -51.93 -0.41 0.43 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -32.99 327.87 -7.04 -40.03 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.49 Total: -2.79 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.48 Total: -7.89 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.11 Total: -24.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.99 -7.04 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838182716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.206 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds