Wall clock time and date at job start Mon Mar 30 2020 19:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.63748 * 2 1 4 4 O 1.20829 * 119.99697 * 120.42636 * 3 2 1 5 5 O 1.34222 * 120.00215 * 300.42153 * 3 2 1 6 6 C 1.45200 * 117.00184 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47458 * 180.02562 * 6 5 3 8 8 O 1.42899 * 109.46889 * 65.00274 * 7 6 5 9 9 C 1.42905 * 113.99778 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46972 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00309 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00236 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47160 * 89.99730 * 14 12 10 16 16 H 1.48503 * 109.47061 * 209.99752 * 14 12 10 17 17 H 1.48500 * 109.46598 * 329.99398 * 14 12 10 18 18 C 1.53026 * 109.81638 * 239.47582 * 2 1 3 19 19 C 1.50067 * 110.14654 * 289.64242 * 18 2 1 20 20 C 1.29449 * 124.07768 * 342.87482 * 19 18 2 21 21 C 1.50066 * 124.07039 * 0.46229 * 20 19 18 22 22 C 1.53024 * 110.15303 * 342.86988 * 21 20 19 23 23 H 1.08995 * 109.47399 * 60.00006 * 1 2 3 24 24 H 1.09002 * 109.47101 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47309 * 299.99313 * 1 2 3 26 26 H 1.09002 * 109.46912 * 60.00336 * 6 5 3 27 27 H 1.09002 * 109.47592 * 300.00455 * 6 5 3 28 28 H 1.08997 * 109.46848 * 305.00193 * 7 6 5 29 29 H 1.08997 * 109.47286 * 185.00291 * 7 6 5 30 30 H 1.09004 * 109.47054 * 299.99711 * 9 8 7 31 31 H 1.09000 * 109.47187 * 59.99767 * 9 8 7 32 32 H 0.96992 * 120.00510 * 180.02562 * 13 12 10 33 33 H 1.08993 * 109.36068 * 49.85403 * 18 2 1 34 34 H 1.09004 * 109.35774 * 169.43585 * 18 2 1 35 35 H 1.08003 * 117.96384 * 162.89067 * 19 18 2 36 36 H 1.07996 * 117.95934 * 180.44299 * 20 19 18 37 37 H 1.09001 * 109.35675 * 222.66420 * 21 20 19 38 38 H 1.09005 * 109.24770 * 103.01449 * 21 20 19 39 39 H 1.08998 * 109.64059 * 289.75870 * 22 21 20 40 40 H 1.08999 * 109.64401 * 169.12018 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0364 1.4193 0.0000 4 8 2.7386 1.8102 0.9023 5 8 1.7076 2.2493 -1.0023 6 6 2.2307 3.6022 -0.9365 7 6 1.7526 4.3938 -2.1554 8 8 0.3315 4.5350 -2.1040 9 6 -0.2203 5.2628 -3.2031 10 6 -1.7167 5.3497 -3.0474 11 1 -2.1981 4.8950 -2.1942 12 6 -2.4710 6.0105 -3.9936 13 7 -3.7770 6.0860 -3.8580 14 14 -1.6382 6.7976 -5.4689 15 1 -1.5621 5.8130 -6.5779 16 1 -2.4235 7.9788 -5.9088 17 1 -0.2673 7.2267 -5.0928 18 6 2.0487 -0.7312 -1.2401 19 6 1.7784 -2.2027 -1.1234 20 6 1.4898 -2.8012 -0.0125 21 6 1.3754 -2.1055 1.3123 22 6 2.0457 -0.7315 1.2458 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 3.3202 3.5704 -0.9280 27 1 1.8743 4.0858 -0.0270 28 1 2.0324 3.8634 -3.0656 29 1 2.2161 5.3803 -2.1526 30 1 0.2023 6.2674 -3.2225 31 1 0.0185 4.7501 -4.1349 32 1 -4.3077 6.5505 -4.5238 33 1 1.5475 -0.3409 -2.1258 34 1 3.1223 -0.5674 -1.3335 35 1 1.8280 -2.7996 -2.0221 36 1 1.3205 -3.8675 -0.0409 37 1 1.8615 -2.7078 2.0798 38 1 0.3219 -1.9819 1.5634 39 1 3.1266 -0.8541 1.1774 40 1 1.7946 -0.1577 2.1378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838182716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:52 Heat of formation + Delta-G solvation = -151.267434 kcal Electronic energy + Delta-G solvation = -20602.533974 eV Core-core repulsion = 17381.552184 eV Total energy + Delta-G solvation = -3220.981790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.02815 -39.74087 -38.72444 -37.42823 -34.90040 -33.52322 -31.95571 -31.59615 -29.57864 -28.18146 -25.31977 -24.25986 -23.99973 -23.19884 -21.27701 -19.11674 -18.81105 -18.19330 -17.96356 -17.81018 -16.97437 -16.53293 -16.35657 -16.06649 -15.48654 -15.13487 -14.79650 -14.59147 -14.44164 -14.19909 -13.82062 -13.71883 -13.39138 -13.15989 -13.00783 -12.87677 -12.70456 -12.64054 -12.33294 -11.99986 -11.87051 -11.76806 -11.68521 -11.39014 -11.36233 -11.08643 -10.93089 -10.42006 -9.86884 -8.37368 -6.46064 1.07928 1.34294 1.37749 1.43471 1.48370 1.62165 2.29797 2.93255 2.95471 3.36999 3.55193 3.70238 3.90387 3.95928 4.08711 4.13889 4.31127 4.34444 4.37279 4.46369 4.51613 4.55649 4.64278 4.67953 4.69767 4.82104 4.86033 4.98277 4.99735 5.05240 5.12005 5.23284 5.32523 5.40414 5.42021 5.77680 5.90440 6.06406 6.57494 6.63804 6.70765 7.18275 8.79924 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.003815 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.603065 B = 7338.559918 C = 7770.447954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.467 3.533 4 O -0.537 6.537 5 O -0.353 6.353 6 C 0.071 3.929 7 C 0.051 3.949 8 O -0.407 6.407 9 C 0.179 3.821 10 C -0.549 4.549 11 H 0.027 0.973 12 C 0.013 3.987 13 N -0.943 5.943 14 Si 0.957 3.043 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.242 1.242 18 C -0.078 4.078 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.091 4.091 22 C -0.097 4.097 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.018 0.982 31 H 0.015 0.985 32 H 0.273 0.727 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.499 -16.235 5.107 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 C 0.311 3.689 4 O -0.427 6.427 5 O -0.269 6.269 6 C -0.003 4.003 7 C -0.025 4.025 8 O -0.327 6.327 9 C 0.103 3.897 10 C -0.587 4.587 11 H 0.045 0.955 12 C -0.185 4.185 13 N -0.582 5.582 14 Si 0.778 3.222 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.165 1.165 18 C -0.115 4.115 19 C -0.177 4.177 20 C -0.172 4.172 21 C -0.127 4.127 22 C -0.134 4.134 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.128 0.872 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.430 -16.088 5.430 22.943 hybrid contribution -0.050 0.890 -0.536 1.040 sum 15.380 -15.198 4.894 22.170 Atomic orbital electron populations 1.21909 0.91163 1.04317 1.02447 1.20713 0.98227 0.85941 1.00106 1.24314 0.76604 0.89297 0.78650 1.90603 1.37010 1.78027 1.37019 1.86604 1.69346 1.23963 1.47008 1.23249 0.99424 0.78406 0.99184 1.22740 0.82765 0.99479 0.97528 1.87925 1.20393 1.76617 1.47769 1.20366 0.92520 0.91031 0.85770 1.21168 0.91588 1.36414 1.09501 0.95453 1.25868 0.95318 0.95823 1.01489 1.70034 1.06853 1.43827 1.37493 0.85583 0.79733 0.78647 0.78219 1.18307 1.19933 1.16520 1.20472 1.01397 0.93940 0.95706 1.22006 1.02007 0.94501 0.99213 1.22255 1.00269 1.00640 0.94011 1.20573 1.01823 0.93808 0.96514 1.21551 1.00708 0.96237 0.94935 0.92595 0.88538 0.92608 0.87241 0.91620 0.91480 0.89144 0.96415 0.96723 0.91762 0.89996 0.90356 0.85948 0.85689 0.88759 0.89621 0.91231 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 7.76 71.98 0.56 -2.82 16 2 C -0.05 -1.15 0.72 -52.79 -0.04 -1.19 16 3 C 0.47 14.19 6.54 71.24 0.47 14.66 16 4 O -0.54 -18.12 15.65 21.95 0.34 -17.78 16 5 O -0.35 -11.74 10.04 -48.70 -0.49 -12.23 16 6 C 0.07 2.15 5.84 71.98 0.42 2.57 16 7 C 0.05 1.69 6.33 71.98 0.46 2.14 16 8 O -0.41 -19.08 10.30 -145.57 -1.50 -20.58 16 9 C 0.18 8.89 4.76 71.24 0.34 9.23 16 10 C -0.55 -33.65 9.99 25.60 0.26 -33.39 16 11 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 12 C 0.01 0.77 5.47 84.65 0.46 1.23 16 13 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 14 Si 0.96 42.79 27.47 68.60 1.88 44.68 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 18 C -0.08 -1.57 4.83 29.66 0.14 -1.43 16 19 C -0.16 -2.54 9.41 27.03 0.25 -2.29 16 20 C -0.15 -2.15 9.16 27.03 0.25 -1.90 16 21 C -0.09 -1.29 5.48 29.66 0.16 -1.13 16 22 C -0.10 -1.93 4.32 30.74 0.13 -1.80 16 23 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 24 H 0.10 1.85 5.71 -2.39 -0.01 1.84 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.11 2.62 8.13 -2.39 -0.02 2.60 16 27 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.02 0.84 7.20 -2.38 -0.02 0.83 16 31 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 34 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 35 H 0.12 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.16 6.92 -2.38 -0.02 1.14 16 39 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 40 H 0.07 1.46 7.91 -2.39 -0.02 1.44 16 Total: -1.00 -73.69 327.87 5.35 -68.34 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.95 Total: 12.83 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.86 Total: -16.12 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.30 Total: -59.15 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -1.64 Total: -50.59 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.68 kcal Total: -73.69 5.35 -68.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838182716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.924 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds