Wall clock time and date at job start Mon Mar 30 2020 19:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99889 * 2 1 4 4 H 1.48507 * 109.46962 * 273.84529 * 3 2 1 5 5 H 1.48496 * 109.47530 * 33.84529 * 3 2 1 6 6 H 1.48498 * 109.47256 * 153.85118 * 3 2 1 7 7 C 1.37886 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99902 * 352.67861 * 7 2 1 9 9 C 1.50698 * 119.99930 * 172.67213 * 7 2 1 10 10 C 1.53003 * 115.54782 * 91.42041 * 9 7 2 11 11 O 1.45202 * 109.46555 * 65.15762 * 10 9 7 12 12 C 1.34234 * 116.99680 * 184.53630 * 11 10 9 13 13 O 1.20823 * 120.00212 * 4.88762 * 12 11 10 14 14 C 1.50707 * 119.99656 * 184.88520 * 12 11 10 15 15 C 1.53002 * 109.46646 * 183.49927 * 14 12 11 16 16 O 1.42905 * 110.01764 * 64.30409 * 15 14 12 17 17 C 1.54260 * 110.03514 * 302.90552 * 15 14 12 18 18 C 1.54967 * 104.16360 * 217.13867 * 17 15 14 19 19 C 1.54888 * 102.77339 * 37.89115 * 18 17 15 20 20 C 1.53879 * 110.02748 * 185.69175 * 15 14 12 21 21 C 1.52996 * 117.50293 * 237.09891 * 9 7 2 22 22 C 1.52998 * 117.50065 * 305.76007 * 9 7 2 23 23 H 0.96998 * 120.00087 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47274 * 185.15024 * 10 9 7 25 25 H 1.08990 * 109.47497 * 305.15649 * 10 9 7 26 26 H 1.08996 * 109.47079 * 303.49562 * 14 12 11 27 27 H 1.09000 * 109.47126 * 63.50231 * 14 12 11 28 28 H 0.96701 * 113.99176 * 300.69586 * 16 15 14 29 29 H 1.09008 * 110.48979 * 335.79001 * 17 15 14 30 30 H 1.09009 * 110.48290 * 98.43125 * 17 15 14 31 31 H 1.08999 * 110.71724 * 279.57733 * 18 17 15 32 32 H 1.08998 * 110.76542 * 156.22458 * 18 17 15 33 33 H 1.09001 * 110.48208 * 203.40979 * 19 18 17 34 34 H 1.08997 * 110.48937 * 80.76538 * 19 18 17 35 35 H 1.09002 * 110.02907 * 238.56812 * 20 15 14 36 36 H 1.08995 * 110.03455 * 0.02562 * 20 15 14 37 37 H 1.09006 * 117.49708 * 215.00862 * 21 9 7 38 38 H 1.09002 * 117.49646 * 0.02562 * 21 9 7 39 39 H 1.09002 * 117.49882 * 359.96744 * 22 9 7 40 40 H 1.09001 * 117.50265 * 144.97471 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4152 2.0934 -1.3970 5 1 1.4896 2.6279 0.7797 6 1 3.5849 1.4181 0.6170 7 6 2.0045 -1.1941 0.0005 8 1 1.4711 -2.1255 0.1201 9 6 3.5023 -1.1995 -0.1659 10 6 4.3106 -1.1474 1.1321 11 8 4.0789 -2.3606 1.8954 12 6 4.6442 -2.4332 3.1108 13 8 5.2360 -1.4802 3.5597 14 6 4.5404 -3.7032 3.9155 15 6 5.1879 -3.4930 5.2857 16 8 4.4620 -2.5081 6.0239 17 6 6.6555 -3.0497 5.1143 18 6 7.4036 -3.7592 6.2712 19 6 6.7011 -5.1379 6.3386 20 6 5.2167 -4.8201 6.0641 21 6 4.0812 -2.0108 -1.3267 22 6 4.0800 -0.4813 -1.3871 23 1 -0.4850 0.8400 -0.0004 24 1 5.3715 -1.0636 0.8963 25 1 3.9996 -0.2836 1.7194 26 1 3.4906 -3.9657 4.0462 27 1 5.0539 -4.5088 3.3907 28 1 4.4173 -1.6451 5.5898 29 1 7.0436 -3.3793 4.1504 30 1 6.7407 -1.9672 5.2110 31 1 7.2742 -3.2136 7.2059 32 1 8.4610 -3.8756 6.0337 33 1 6.8201 -5.5787 7.3284 34 1 7.0962 -5.8053 5.5728 35 1 4.6776 -4.7125 7.0054 36 1 4.7697 -5.6138 5.4656 37 1 5.0380 -2.5077 -1.1656 38 1 3.3787 -2.5404 -1.9703 39 1 3.3767 -0.0054 -2.0705 40 1 5.0358 0.0285 -1.2658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849732852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:20 Heat of formation + Delta-G solvation = -144.851988 kcal Electronic energy + Delta-G solvation = -21159.371559 eV Core-core repulsion = 17938.667964 eV Total energy + Delta-G solvation = -3220.703595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81420 -39.96214 -38.66925 -37.00397 -35.77079 -34.27545 -32.22771 -29.70617 -29.06158 -27.57908 -26.48051 -23.39474 -22.24111 -21.80947 -21.07368 -20.70652 -18.76067 -18.45066 -17.75711 -17.62228 -17.09586 -16.71655 -16.23765 -16.09502 -15.40983 -15.00810 -14.76423 -14.44973 -14.25768 -13.89882 -13.71917 -13.53003 -13.10712 -13.00685 -12.72880 -12.44953 -12.28596 -12.13408 -12.05623 -11.99375 -11.77377 -11.69697 -11.57180 -11.44872 -11.26772 -10.92204 -10.87649 -10.70812 -10.38904 -8.33704 -6.39818 1.16927 1.30290 1.35154 1.44874 1.72673 2.31948 2.99425 3.13013 3.19432 3.47627 3.62433 3.77701 3.89532 3.99283 4.20531 4.23739 4.28111 4.30202 4.37465 4.47379 4.53654 4.59914 4.66356 4.80428 4.80870 4.85759 5.00461 5.01289 5.06129 5.13428 5.20381 5.21413 5.36366 5.44122 5.48029 5.62020 5.64814 6.27408 6.62322 6.67782 6.77711 7.28656 8.82278 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.004674 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.745559 B = 5988.990881 C = 6191.505596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.022 3.978 3 Si 0.934 3.066 4 H -0.259 1.259 5 H -0.297 1.297 6 H -0.241 1.241 7 C -0.484 4.484 8 H 0.033 0.967 9 C -0.040 4.040 10 C 0.113 3.887 11 O -0.349 6.349 12 C 0.453 3.547 13 O -0.539 6.539 14 C -0.138 4.138 15 C 0.136 3.864 16 O -0.574 6.574 17 C -0.142 4.142 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.154 4.154 22 C -0.180 4.180 23 H 0.266 0.734 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.116 0.884 27 H 0.143 0.857 28 H 0.379 0.621 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.037 -8.991 8.971 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.184 1.184 5 H -0.224 1.224 6 H -0.165 1.165 7 C -0.522 4.522 8 H 0.051 0.949 9 C -0.041 4.041 10 C 0.040 3.960 11 O -0.265 6.265 12 C 0.298 3.702 13 O -0.430 6.430 14 C -0.175 4.175 15 C 0.095 3.905 16 O -0.383 6.383 17 C -0.180 4.180 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.191 4.191 22 C -0.217 4.217 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.161 0.839 28 H 0.229 0.771 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.956 -9.076 9.470 20.656 hybrid contribution -0.487 1.748 -0.542 1.893 sum 15.469 -7.329 8.928 19.306 Atomic orbital electron populations 1.70040 1.08275 1.28123 1.52045 1.25820 0.95233 1.02722 0.93771 0.85960 0.80035 0.78880 0.79281 1.18426 1.22443 1.16476 1.20347 0.89430 0.92965 1.49451 0.94880 1.19239 0.93261 1.05045 0.86516 1.22797 0.98137 0.83768 0.91346 1.86564 1.67972 1.42936 1.28987 1.24424 0.74185 0.90975 0.80567 1.90564 1.41600 1.39868 1.71016 1.22468 1.06397 0.93435 0.95240 1.21926 0.90404 0.90188 0.87954 1.86440 1.76781 1.24494 1.50565 1.23043 0.94577 1.00805 0.99563 1.22518 0.99615 0.96251 0.97678 1.22379 0.93199 0.96884 1.03034 1.22217 0.98783 0.93222 1.00698 1.22888 1.01824 0.92639 1.01712 1.23051 1.01978 0.96020 1.00682 0.92450 0.90945 0.93476 0.86633 0.83900 0.77111 0.91126 0.92094 0.92093 0.90274 0.90063 0.89782 0.90802 0.88582 0.87451 0.89928 0.89943 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 2 C 0.02 1.29 5.46 84.66 0.46 1.75 16 3 Si 0.93 44.07 24.88 68.60 1.71 45.78 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.24 -10.52 5.79 99.48 0.58 -9.95 16 7 C -0.48 -27.47 9.36 25.60 0.24 -27.23 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 9 C -0.04 -1.79 1.07 -52.93 -0.06 -1.84 16 10 C 0.11 4.69 5.03 71.98 0.36 5.05 16 11 O -0.35 -13.88 10.16 -51.46 -0.52 -14.41 16 12 C 0.45 15.12 7.41 71.24 0.53 15.65 16 13 O -0.54 -19.37 12.20 26.71 0.33 -19.04 16 14 C -0.14 -3.33 4.74 29.85 0.14 -3.19 16 15 C 0.14 3.18 0.98 -10.07 -0.01 3.17 16 16 O -0.57 -16.71 12.89 -136.57 -1.76 -18.47 16 17 C -0.14 -3.22 4.59 31.69 0.15 -3.07 16 18 C -0.12 -2.15 6.91 31.91 0.22 -1.93 16 19 C -0.12 -1.65 6.83 31.67 0.22 -1.44 16 20 C -0.11 -1.97 6.27 31.32 0.20 -1.77 16 21 C -0.15 -5.75 9.96 30.62 0.30 -5.44 16 22 C -0.18 -6.94 7.61 30.62 0.23 -6.70 16 23 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 24 H 0.07 2.58 8.09 -2.39 -0.02 2.57 16 25 H 0.05 2.13 6.59 -2.39 -0.02 2.11 16 26 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.38 11.47 7.09 -74.06 -0.52 10.95 16 29 H 0.07 1.53 7.79 -2.38 -0.02 1.51 16 30 H 0.06 1.66 7.14 -2.38 -0.02 1.65 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.43 7.95 -2.39 -0.02 1.41 16 36 H 0.10 1.32 7.67 -2.39 -0.02 1.30 16 37 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.08 3.38 7.17 -2.39 -0.02 3.36 16 40 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -68.40 319.46 3.40 -65.00 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.37 Total: 26.84 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 2.98 Total: -26.99 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.30 Total: -58.71 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -1.96 Total: -51.92 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.71 Total: 45.78 kcal Total: -68.40 3.40 -65.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849732852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.852 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds