Wall clock time and date at job start Mon Mar 30 2020 19:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.32860 * 2 1 4 4 C 1.54475 * 110.37397 * 237.62977 * 2 1 3 5 5 C 1.54510 * 104.06251 * 217.19125 * 4 2 1 6 6 H 1.08996 * 110.63228 * 118.69715 * 5 4 2 7 7 C 1.50699 * 110.50979 * 241.35592 * 5 4 2 8 8 O 1.20826 * 120.00420 * 114.63915 * 7 5 4 9 9 O 1.34232 * 119.99654 * 294.63792 * 7 5 4 10 10 C 1.45202 * 116.99803 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47308 * 180.02562 * 10 9 7 12 12 C 1.50701 * 115.55045 * 294.89965 * 11 10 9 13 13 H 1.08000 * 119.99973 * 95.15609 * 12 11 10 14 14 C 1.37876 * 119.99887 * 275.16521 * 12 11 10 15 15 N 1.31515 * 119.99734 * 6.06847 * 14 12 11 16 16 Si 1.86799 * 119.99945 * 186.07350 * 14 12 11 17 17 H 1.48507 * 109.46812 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47094 * 299.99351 * 16 14 12 19 19 H 1.48497 * 109.47224 * 59.99654 * 16 14 12 20 20 C 1.53002 * 117.49753 * 80.56369 * 11 10 9 21 21 C 1.52997 * 117.50118 * 149.22407 * 11 10 9 22 22 C 1.54485 * 104.06319 * 359.97438 * 5 4 2 23 23 H 1.08999 * 110.37227 * 265.15324 * 22 5 4 24 24 C 1.52994 * 110.37223 * 142.91951 * 22 5 4 25 25 O 1.44422 * 110.37154 * 122.24422 * 2 1 3 26 26 H 1.08995 * 109.47196 * 299.20633 * 1 2 3 27 27 H 1.08996 * 109.47088 * 59.20596 * 1 2 3 28 28 H 1.08999 * 109.47265 * 179.20752 * 1 2 3 29 29 H 1.08994 * 110.51072 * 98.54611 * 4 2 1 30 30 H 1.09005 * 110.50724 * 335.83279 * 4 2 1 31 31 H 1.09000 * 109.47104 * 59.99944 * 10 9 7 32 32 H 1.09004 * 109.47253 * 300.00118 * 10 9 7 33 33 H 0.97004 * 119.99535 * 180.02562 * 15 14 12 34 34 H 1.09004 * 117.49885 * 215.00144 * 20 11 10 35 35 H 1.09001 * 117.50223 * 0.02728 * 20 11 10 36 36 H 1.08994 * 117.49823 * 359.97438 * 21 11 10 37 37 H 1.09003 * 117.49874 * 144.97201 * 21 11 10 38 38 H 1.09010 * 109.47139 * 60.00188 * 24 22 5 39 39 H 1.08995 * 109.47430 * 180.02562 * 24 22 5 40 40 H 1.09000 * 109.47828 * 300.00510 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7753 -1.2231 5 6 3.3178 -1.5064 -0.6842 6 1 3.1980 -2.5863 -0.7703 7 6 4.5526 -1.0531 -1.4196 8 8 5.4187 -0.4497 -0.8315 9 8 4.6903 -1.3196 -2.7279 10 6 5.9057 -0.8534 -3.3713 11 6 5.8832 -1.2465 -4.8497 12 6 5.9174 -2.7270 -5.1292 13 1 4.9964 -3.2673 -5.2910 14 6 7.1243 -3.3917 -5.1781 15 7 8.2352 -2.7615 -4.8640 16 14 7.1818 -5.1871 -5.6906 17 1 8.5876 -5.6650 -5.6625 18 1 6.3645 -5.9963 -4.7512 19 1 6.6392 -5.3269 -7.0658 20 6 5.0718 -0.3663 -5.8025 21 6 6.6016 -0.3245 -5.8369 22 6 3.3877 -1.0857 0.8006 23 1 4.0529 -0.2308 0.9219 24 6 3.8630 -2.2560 1.6639 25 8 2.0328 -0.7223 1.1451 26 1 -0.3633 0.5014 0.8970 27 1 -0.3633 0.5261 -0.8827 28 1 -0.3634 -1.0275 -0.0142 29 1 2.3430 -0.0861 -2.0213 30 1 1.3276 -1.4936 -1.5756 31 1 6.7702 -1.3076 -2.8872 32 1 5.9692 0.2314 -3.2851 33 1 9.0844 -3.2291 -4.8988 34 1 4.5628 -0.8580 -6.6316 35 1 4.5544 0.4931 -5.3762 36 1 7.0899 0.5624 -5.4332 37 1 7.0994 -0.7887 -6.6883 38 1 4.8543 -2.5699 1.3366 39 1 3.9065 -1.9437 2.7073 40 1 3.1667 -3.0885 1.5630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869649786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:44 Heat of formation + Delta-G solvation = -120.212992 kcal Electronic energy + Delta-G solvation = -21110.343500 eV Core-core repulsion = 17890.708332 eV Total energy + Delta-G solvation = -3219.635168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54930 -38.93899 -36.79653 -35.30469 -32.83463 -32.54854 -31.99611 -29.11986 -26.98526 -25.40769 -24.55444 -22.18758 -21.40912 -21.19176 -19.87791 -19.29730 -17.34636 -16.80454 -16.07351 -15.88329 -15.70337 -14.95490 -14.78281 -14.58918 -13.89183 -13.63709 -13.23583 -12.93636 -12.81379 -12.38384 -12.22685 -12.01504 -11.99320 -11.67554 -11.63632 -11.26586 -11.00392 -10.97612 -10.90089 -10.74777 -10.57762 -10.33389 -10.05582 -9.90797 -9.78319 -9.55401 -8.87427 -8.50489 -8.25375 -6.10307 -4.15875 2.64406 3.17623 3.28093 3.32980 3.35371 3.72700 4.36132 4.44914 4.51654 4.77280 4.94303 5.08001 5.17772 5.19859 5.23785 5.33937 5.42386 5.45763 5.51178 5.65964 5.74048 5.89419 5.91903 5.93347 5.98870 6.03465 6.14154 6.19278 6.28469 6.47883 6.60436 6.68325 6.79716 6.98651 7.19061 7.31686 7.42317 7.82875 8.29316 8.38405 8.85569 9.50180 10.99090 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.004943 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.629177 B = 5663.478502 C = 6058.123448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.137 4.137 5 C -0.116 4.116 6 H 0.120 0.880 7 C 0.463 3.537 8 O -0.520 6.520 9 O -0.333 6.333 10 C 0.115 3.885 11 C 0.037 3.963 12 C -0.491 4.491 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.893 3.107 17 H -0.287 1.287 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.205 4.205 21 C -0.145 4.145 22 C 0.084 3.916 23 H 0.089 0.911 24 C -0.145 4.145 25 O -0.367 6.367 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 3.872 8.230 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.175 4.175 5 C -0.136 4.136 6 H 0.138 0.862 7 C 0.305 3.695 8 O -0.410 6.410 9 O -0.248 6.248 10 C 0.042 3.958 11 C 0.037 3.963 12 C -0.528 4.528 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.212 1.212 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.242 4.242 21 C -0.183 4.183 22 C 0.026 3.974 23 H 0.107 0.893 24 C -0.202 4.202 25 O -0.287 6.287 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.128 3.973 8.564 14.593 hybrid contribution 0.537 -0.856 -0.518 1.136 sum -10.591 3.117 8.046 13.661 Atomic orbital electron populations 1.21798 0.92918 1.03016 1.02462 1.23007 0.95437 0.95609 0.84864 0.91202 1.22965 0.95823 1.00094 0.98616 1.22440 0.92080 1.03776 0.95296 0.86228 1.23164 0.87460 0.76546 0.82286 1.90607 1.42683 1.39053 1.68704 1.86526 1.44574 1.71905 1.21800 1.22931 0.83123 0.95484 0.94254 1.18774 0.99108 0.93348 0.85081 1.20339 0.92648 0.90646 1.49203 0.91926 1.25013 0.95647 0.98154 0.94601 1.69988 0.98139 1.36844 1.46829 0.86643 0.77014 0.84944 0.79349 1.21243 1.20137 1.20102 1.23005 0.94185 1.02464 1.04572 1.22546 0.92509 1.00274 1.02945 1.22940 0.84783 0.98894 0.90781 0.89288 1.21799 1.01688 0.96819 0.99893 1.89135 1.27059 1.74477 1.37994 0.91866 0.91007 0.91638 0.89604 0.89081 0.90508 0.94347 0.92811 0.90033 0.91586 0.91644 0.89398 0.90716 0.91566 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.52 37.16 0.35 -0.94 16 2 C 0.07 0.78 3.92 -25.96 -0.10 0.68 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.14 -1.69 6.27 -25.16 -0.16 -1.85 16 5 C -0.12 -1.69 3.17 -90.20 -0.29 -1.98 16 6 H 0.12 1.61 7.87 -51.93 -0.41 1.21 16 7 C 0.46 8.75 7.06 36.01 0.25 9.00 16 8 O -0.52 -10.92 15.20 -18.75 -0.28 -11.21 16 9 O -0.33 -7.19 10.16 -39.26 -0.40 -7.59 16 10 C 0.12 2.71 5.29 37.16 0.20 2.91 16 11 C 0.04 0.92 1.60 -155.66 -0.25 0.67 16 12 C -0.49 -13.22 8.77 -34.44 -0.30 -13.53 16 13 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 14 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 15 N -0.88 -24.66 12.93 55.43 0.72 -23.95 16 16 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 21 C -0.15 -3.33 9.44 -26.69 -0.25 -3.58 16 22 C 0.08 1.15 3.27 -25.96 -0.08 1.07 16 23 H 0.09 1.35 6.90 -51.93 -0.36 0.99 16 24 C -0.14 -1.74 9.52 37.15 0.35 -1.39 16 25 O -0.37 -4.92 11.04 -35.23 -0.39 -5.31 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.09 1.10 7.73 -51.93 -0.40 0.69 16 30 H 0.09 0.98 7.86 -51.93 -0.41 0.57 16 31 H 0.08 2.00 8.13 -51.93 -0.42 1.58 16 32 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 38 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -29.50 335.62 -7.57 -37.07 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.61 Total: 1.90 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.64 Total: -11.81 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.72 Total: -23.95 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -1.07 Total: -24.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.50 -7.57 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869649786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.142 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds