Wall clock time and date at job start Mon Mar 30 2020 19:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.32860 * 2 1 4 4 C 1.54475 * 110.37397 * 237.62977 * 2 1 3 5 5 C 1.54510 * 104.06251 * 217.19125 * 4 2 1 6 6 H 1.08996 * 110.63228 * 118.69715 * 5 4 2 7 7 C 1.50699 * 110.50979 * 241.35592 * 5 4 2 8 8 O 1.20826 * 120.00420 * 114.63915 * 7 5 4 9 9 O 1.34232 * 119.99654 * 294.63792 * 7 5 4 10 10 C 1.45202 * 116.99803 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47308 * 180.02562 * 10 9 7 12 12 C 1.50701 * 115.55045 * 294.89965 * 11 10 9 13 13 H 1.08000 * 119.99973 * 95.15609 * 12 11 10 14 14 C 1.37876 * 119.99887 * 275.16521 * 12 11 10 15 15 N 1.31515 * 119.99734 * 6.06847 * 14 12 11 16 16 Si 1.86799 * 119.99945 * 186.07350 * 14 12 11 17 17 H 1.48507 * 109.46812 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47094 * 299.99351 * 16 14 12 19 19 H 1.48497 * 109.47224 * 59.99654 * 16 14 12 20 20 C 1.53002 * 117.49753 * 80.56369 * 11 10 9 21 21 C 1.52997 * 117.50118 * 149.22407 * 11 10 9 22 22 C 1.54485 * 104.06319 * 359.97438 * 5 4 2 23 23 H 1.08999 * 110.37227 * 265.15324 * 22 5 4 24 24 C 1.52994 * 110.37223 * 142.91951 * 22 5 4 25 25 O 1.44422 * 110.37154 * 122.24422 * 2 1 3 26 26 H 1.08995 * 109.47196 * 299.20633 * 1 2 3 27 27 H 1.08996 * 109.47088 * 59.20596 * 1 2 3 28 28 H 1.08999 * 109.47265 * 179.20752 * 1 2 3 29 29 H 1.08994 * 110.51072 * 98.54611 * 4 2 1 30 30 H 1.09005 * 110.50724 * 335.83279 * 4 2 1 31 31 H 1.09000 * 109.47104 * 59.99944 * 10 9 7 32 32 H 1.09004 * 109.47253 * 300.00118 * 10 9 7 33 33 H 0.97004 * 119.99535 * 180.02562 * 15 14 12 34 34 H 1.09004 * 117.49885 * 215.00144 * 20 11 10 35 35 H 1.09001 * 117.50223 * 0.02728 * 20 11 10 36 36 H 1.08994 * 117.49823 * 359.97438 * 21 11 10 37 37 H 1.09003 * 117.49874 * 144.97201 * 21 11 10 38 38 H 1.09010 * 109.47139 * 60.00188 * 24 22 5 39 39 H 1.08995 * 109.47430 * 180.02562 * 24 22 5 40 40 H 1.09000 * 109.47828 * 300.00510 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7753 -1.2231 5 6 3.3178 -1.5064 -0.6842 6 1 3.1980 -2.5863 -0.7703 7 6 4.5526 -1.0531 -1.4196 8 8 5.4187 -0.4497 -0.8315 9 8 4.6903 -1.3196 -2.7279 10 6 5.9057 -0.8534 -3.3713 11 6 5.8832 -1.2465 -4.8497 12 6 5.9174 -2.7270 -5.1292 13 1 4.9964 -3.2673 -5.2910 14 6 7.1243 -3.3917 -5.1781 15 7 8.2352 -2.7615 -4.8640 16 14 7.1818 -5.1871 -5.6906 17 1 8.5876 -5.6650 -5.6625 18 1 6.3645 -5.9963 -4.7512 19 1 6.6392 -5.3269 -7.0658 20 6 5.0718 -0.3663 -5.8025 21 6 6.6016 -0.3245 -5.8369 22 6 3.3877 -1.0857 0.8006 23 1 4.0529 -0.2308 0.9219 24 6 3.8630 -2.2560 1.6639 25 8 2.0328 -0.7223 1.1451 26 1 -0.3633 0.5014 0.8970 27 1 -0.3633 0.5261 -0.8827 28 1 -0.3634 -1.0275 -0.0142 29 1 2.3430 -0.0861 -2.0213 30 1 1.3276 -1.4936 -1.5756 31 1 6.7702 -1.3076 -2.8872 32 1 5.9692 0.2314 -3.2851 33 1 9.0844 -3.2291 -4.8988 34 1 4.5628 -0.8580 -6.6316 35 1 4.5544 0.4931 -5.3762 36 1 7.0899 0.5624 -5.4332 37 1 7.0994 -0.7887 -6.6883 38 1 4.8543 -2.5699 1.3366 39 1 3.9065 -1.9437 2.7073 40 1 3.1667 -3.0885 1.5630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869649786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:44 Heat of formation + Delta-G solvation = -135.818861 kcal Electronic energy + Delta-G solvation = -21111.020222 eV Core-core repulsion = 17890.708332 eV Total energy + Delta-G solvation = -3220.311890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92234 -40.24586 -38.55828 -37.01360 -34.04278 -33.81028 -33.61552 -30.09080 -28.70341 -27.36782 -25.71188 -23.45929 -22.94414 -22.34037 -21.25242 -21.16876 -18.75681 -18.54580 -17.63648 -17.41834 -16.79018 -16.64359 -16.18148 -16.03201 -15.52572 -14.86021 -14.66977 -14.13467 -14.04044 -13.79456 -13.60235 -13.45611 -13.06306 -12.91992 -12.85094 -12.80646 -12.74696 -12.43096 -12.31073 -12.11459 -11.98615 -11.76584 -11.69424 -11.60717 -11.33755 -10.81044 -10.79180 -10.50323 -10.10446 -8.15112 -6.26528 1.12453 1.42521 1.43158 1.50907 1.68018 2.41529 2.70726 3.14037 3.37832 3.39259 3.49437 3.71372 3.85640 4.07757 4.11124 4.14569 4.31167 4.35689 4.39324 4.45017 4.50296 4.62348 4.63366 4.77109 4.80223 4.86476 4.94417 4.95716 5.03060 5.10733 5.16462 5.16900 5.31236 5.42493 5.56034 5.64561 5.73418 5.81108 6.33763 6.73419 6.78753 7.42498 8.93625 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.004943 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.629177 B = 5663.478502 C = 6058.123448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.064 3.936 3 H 0.069 0.931 4 C -0.134 4.134 5 C -0.113 4.113 6 H 0.134 0.866 7 C 0.461 3.539 8 O -0.545 6.545 9 O -0.342 6.342 10 C 0.128 3.872 11 C 0.003 3.997 12 C -0.505 4.505 13 H 0.056 0.944 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.952 3.048 17 H -0.286 1.286 18 H -0.272 1.272 19 H -0.268 1.268 20 C -0.176 4.176 21 C -0.148 4.148 22 C 0.086 3.914 23 H 0.070 0.930 24 C -0.143 4.143 25 O -0.372 6.372 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.261 0.739 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 3.587 8.288 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.007 3.993 3 H 0.087 0.913 4 C -0.172 4.172 5 C -0.132 4.132 6 H 0.151 0.849 7 C 0.305 3.695 8 O -0.436 6.436 9 O -0.257 6.257 10 C 0.054 3.946 11 C 0.003 3.997 12 C -0.542 4.542 13 H 0.074 0.926 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.777 3.223 17 H -0.211 1.211 18 H -0.197 1.197 19 H -0.193 1.193 20 C -0.213 4.213 21 C -0.185 4.185 22 C 0.028 3.972 23 H 0.088 0.912 24 C -0.200 4.200 25 O -0.292 6.292 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.177 3.693 8.623 16.175 hybrid contribution 1.139 -0.714 -0.496 1.434 sum -12.037 2.979 8.127 14.826 Atomic orbital electron populations 1.21805 0.90633 1.03667 1.03591 1.23193 0.97197 0.95173 0.83778 0.91325 1.23031 0.95011 1.00332 0.98793 1.22597 0.90727 1.04680 0.95242 0.84865 1.24046 0.88445 0.75654 0.81333 1.90593 1.43985 1.40224 1.68844 1.86529 1.43512 1.72322 1.23330 1.22535 0.82761 0.95543 0.93720 1.18883 1.01936 0.92947 0.85983 1.20600 0.92460 0.92166 1.49001 0.92580 1.25721 0.95359 1.01960 0.94651 1.70099 0.98470 1.38302 1.47888 0.85709 0.76952 0.80375 0.79228 1.21113 1.19738 1.19291 1.23017 0.93164 1.01970 1.03129 1.22485 0.93896 1.00196 1.01942 1.22865 0.84979 0.98817 0.90562 0.91205 1.21796 1.01419 0.96625 1.00183 1.89139 1.26490 1.74696 1.38866 0.91383 0.89264 0.91230 0.90124 0.87035 0.94171 0.93381 0.92994 0.89491 0.89017 0.90483 0.91154 0.91650 0.90450 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.52 71.98 0.69 -1.40 16 2 C 0.06 1.33 3.92 31.10 0.12 1.46 16 3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.13 -3.02 6.27 31.61 0.20 -2.82 16 5 C -0.11 -3.16 3.17 -10.52 -0.03 -3.19 16 6 H 0.13 3.37 7.87 -2.39 -0.02 3.35 16 7 C 0.46 17.41 7.06 71.24 0.50 17.91 16 8 O -0.55 -23.31 15.20 21.96 0.33 -22.97 16 9 O -0.34 -14.73 10.16 -51.44 -0.52 -15.25 16 10 C 0.13 6.10 5.29 71.98 0.38 6.48 16 11 C 0.00 0.14 1.60 -52.93 -0.08 0.06 16 12 C -0.50 -27.28 8.77 25.60 0.22 -27.05 16 13 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 14 C 0.02 1.27 5.39 84.65 0.46 1.73 16 15 N -0.91 -51.78 12.93 21.45 0.28 -51.50 16 16 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 C -0.18 -7.24 9.96 30.62 0.30 -6.93 16 21 C -0.15 -6.73 9.44 30.62 0.29 -6.44 16 22 C 0.09 2.28 3.27 31.10 0.10 2.38 16 23 H 0.07 2.13 6.90 -2.39 -0.02 2.11 16 24 C -0.14 -3.28 9.52 71.98 0.69 -2.59 16 25 O -0.37 -9.31 11.04 -148.98 -1.64 -10.95 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 29 H 0.08 1.92 7.73 -2.39 -0.02 1.90 16 30 H 0.11 2.07 7.86 -2.38 -0.02 2.05 16 31 H 0.04 2.17 8.13 -2.39 -0.02 2.15 16 32 H 0.05 2.14 8.08 -2.38 -0.02 2.12 16 33 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 34 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.07 3.41 8.14 -2.39 -0.02 3.40 16 38 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -63.12 335.62 5.31 -57.82 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.00 Total: 18.41 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.83 Total: -20.40 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.28 Total: -51.50 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -1.83 Total: -49.18 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -63.12 5.31 -57.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869649786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.001 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds