Wall clock time and date at job start Mon Mar 30 2020 19:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.55450 * 2 1 4 4 C 1.52997 * 117.51528 * 214.29273 * 2 1 3 5 5 C 1.53000 * 60.00347 * 252.52230 * 4 2 1 6 6 H 1.08990 * 117.49990 * 252.50929 * 5 4 2 7 7 C 1.52998 * 117.49463 * 107.48750 * 5 4 2 8 8 H 1.09000 * 115.55622 * 325.66255 * 7 5 4 9 9 C 1.53006 * 117.49811 * 179.97438 * 7 5 4 10 10 C 1.53006 * 117.49550 * 111.36617 * 7 5 4 11 11 H 1.08996 * 117.49820 * 359.97438 * 10 7 5 12 12 C 1.50701 * 117.49825 * 214.97650 * 10 7 5 13 13 O 1.20825 * 120.00188 * 359.97438 * 12 10 7 14 14 O 1.34228 * 119.99671 * 180.02562 * 12 10 7 15 15 C 1.45204 * 116.99586 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.46998 * 180.02562 * 15 14 12 17 17 O 1.42901 * 109.47492 * 64.99608 * 16 15 14 18 18 C 1.42894 * 114.00333 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47493 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99411 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00370 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99878 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47260 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47115 * 120.00097 * 23 21 19 26 26 H 1.48507 * 109.46669 * 239.99880 * 23 21 19 27 27 H 1.09004 * 109.46885 * 274.33679 * 1 2 3 28 28 H 1.09001 * 109.46454 * 34.32691 * 1 2 3 29 29 H 1.08998 * 109.47494 * 154.32834 * 1 2 3 30 30 H 1.09002 * 117.49910 * 145.03371 * 4 2 1 31 31 H 1.09002 * 117.49884 * 0.02562 * 4 2 1 32 32 H 1.09000 * 117.49311 * 0.02562 * 9 7 5 33 33 H 1.08993 * 117.49863 * 145.02352 * 9 7 5 34 34 H 1.08996 * 109.47162 * 299.99761 * 15 14 12 35 35 H 1.09000 * 109.46935 * 59.99990 * 15 14 12 36 36 H 1.08997 * 109.47458 * 185.00138 * 16 15 14 37 37 H 1.09002 * 109.46902 * 304.99822 * 16 15 14 38 38 H 1.08999 * 109.47646 * 300.00808 * 18 17 16 39 39 H 1.09004 * 109.46810 * 60.00179 * 18 17 16 40 40 H 0.97001 * 120.00144 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2368 -1.1210 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 3.1712 -0.8748 1.2690 7 6 1.3586 -2.1560 1.4718 8 1 0.4236 -2.4015 0.9683 9 6 1.3586 -2.1562 3.0018 10 6 2.0651 -3.2769 2.2369 11 1 3.1550 -3.2771 2.2367 12 6 1.4148 -4.6365 2.2368 13 8 0.3743 -4.8085 1.6473 14 8 1.9912 -5.6560 2.8926 15 6 1.3092 -6.9372 2.8492 16 6 2.1096 -7.9683 3.6474 17 8 2.1256 -7.5950 5.0267 18 6 2.8508 -8.4972 5.8647 19 6 2.8016 -8.0090 7.2896 20 1 2.2693 -7.1009 7.5311 21 6 3.4360 -8.7218 8.2848 22 7 4.0837 -9.8279 7.9907 23 14 3.3743 -8.1170 10.0511 24 1 2.5879 -6.8590 10.1164 25 1 2.7318 -9.1480 10.9051 26 1 4.7549 -7.8629 10.5357 27 1 -0.3633 0.0777 1.0248 28 1 -0.3632 0.8487 -0.5795 29 1 -0.3634 -0.9262 -0.4452 30 1 3.1721 -0.8752 -1.2676 31 1 1.6118 -1.8586 -1.2680 32 1 1.9836 -1.4185 3.5051 33 1 0.4236 -2.4020 3.5050 34 1 0.3148 -6.8344 3.2835 35 1 1.2213 -7.2671 1.8141 36 1 1.6461 -8.9491 3.5418 37 1 3.1313 -8.0067 3.2696 38 1 2.4023 -9.4888 5.8050 39 1 3.8879 -8.5470 5.5329 40 1 4.5304 -10.3292 8.6908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869885404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:59 Heat of formation + Delta-G solvation = -115.421440 kcal Electronic energy + Delta-G solvation = -19633.534271 eV Core-core repulsion = 16414.106880 eV Total energy + Delta-G solvation = -3219.427391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.73742 -39.71080 -38.73054 -37.56075 -36.35881 -34.96004 -31.76604 -29.38789 -29.09955 -26.60908 -24.59297 -24.43920 -23.46432 -22.32238 -21.49649 -20.24092 -18.84537 -18.70748 -17.93904 -17.80011 -17.07686 -16.62101 -16.40158 -16.17717 -15.64151 -15.16690 -14.59168 -14.41800 -14.03802 -13.92566 -13.70197 -13.55732 -13.27729 -13.15616 -12.92043 -12.73625 -12.49030 -12.37854 -12.22193 -12.02232 -11.91930 -11.81731 -11.74305 -11.51981 -11.28231 -10.91697 -10.72228 -10.39116 -10.29114 -8.33574 -6.45843 0.98678 1.40154 1.41514 1.54167 1.56365 2.33989 2.48951 3.00360 3.03155 3.12805 3.43236 3.57434 3.70512 3.88816 3.89908 4.06070 4.08832 4.17848 4.26769 4.31847 4.37883 4.47316 4.50404 4.63070 4.76610 4.83285 4.88371 4.93659 4.97633 4.98693 5.14128 5.15505 5.22268 5.32423 5.38744 5.47233 5.53276 5.93535 6.47719 6.65563 6.77980 7.25828 8.78930 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.002977 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.727914 B = 9402.591241 C = 9984.237299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.139 4.139 3 H 0.120 0.880 4 C -0.177 4.177 5 C -0.131 4.131 6 H 0.121 0.879 7 C -0.074 4.074 8 H 0.106 0.894 9 C -0.131 4.131 10 C -0.178 4.178 11 H 0.150 0.850 12 C 0.488 3.512 13 O -0.540 6.540 14 O -0.356 6.356 15 C 0.077 3.923 16 C 0.054 3.946 17 O -0.409 6.409 18 C 0.207 3.793 19 C -0.550 4.550 20 H 0.060 0.940 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.984 3.016 24 H -0.265 1.265 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.057 0.943 38 H -0.007 1.007 39 H -0.010 1.010 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 18.366 -15.993 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 H 0.138 0.862 4 C -0.214 4.214 5 C -0.149 4.149 6 H 0.139 0.861 7 C -0.092 4.092 8 H 0.124 0.876 9 C -0.168 4.168 10 C -0.197 4.197 11 H 0.168 0.832 12 C 0.334 3.666 13 O -0.431 6.431 14 O -0.272 6.272 15 C 0.004 3.996 16 C -0.023 4.023 17 O -0.330 6.330 18 C 0.132 3.868 19 C -0.587 4.587 20 H 0.078 0.922 21 C -0.192 4.192 22 N -0.569 5.569 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.195 1.195 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.010 0.990 39 H 0.007 0.993 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.075 18.282 -16.016 24.644 hybrid contribution 0.126 -0.873 0.603 1.069 sum -3.950 17.408 -15.413 23.584 Atomic orbital electron populations 1.21398 0.92892 1.01934 1.02156 1.22455 0.95567 0.94570 1.03108 0.86176 1.23191 1.03236 1.01574 0.93361 1.21865 1.00423 0.98615 0.93997 0.86082 1.21853 0.99223 0.94195 0.93973 0.87642 1.23230 1.02014 0.97148 0.94413 1.21940 1.01607 0.84076 1.12076 0.83236 1.23233 0.82441 0.86874 0.74055 1.90602 1.24535 1.84753 1.43256 1.86588 1.52689 1.20237 1.67652 1.23209 0.95787 0.79561 1.01078 1.22643 1.00240 0.96604 0.82795 1.87863 1.75612 1.52037 1.17445 1.19888 0.89505 0.88045 0.89326 1.21405 1.34533 1.10403 0.92378 0.92217 1.25960 0.93954 0.94722 1.04563 1.70066 1.34586 1.16739 1.35473 0.85125 0.78477 0.78598 0.77138 1.18925 1.19574 1.19519 0.92046 0.91143 0.93364 0.87415 0.89513 0.84662 0.88638 0.91108 0.87397 0.89889 0.92518 0.98964 0.99251 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.04 71.98 0.65 -0.97 16 2 C -0.14 -1.72 6.41 -10.79 -0.07 -1.79 16 3 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 4 C -0.18 -2.41 9.90 30.59 0.30 -2.10 16 5 C -0.13 -1.88 5.85 -10.79 -0.06 -1.94 16 6 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 7 C -0.07 -1.40 4.69 -10.79 -0.05 -1.45 16 8 H 0.11 2.32 6.72 -2.39 -0.02 2.30 16 9 C -0.13 -2.47 9.95 30.59 0.30 -2.16 16 10 C -0.18 -4.07 6.02 -11.54 -0.07 -4.14 16 11 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 12 C 0.49 15.14 7.74 71.24 0.55 15.69 16 13 O -0.54 -18.56 16.01 21.97 0.35 -18.21 16 14 O -0.36 -12.44 10.19 -48.76 -0.50 -12.94 16 15 C 0.08 2.51 5.84 71.98 0.42 2.93 16 16 C 0.05 2.01 6.33 71.98 0.46 2.47 16 17 O -0.41 -20.54 10.30 -145.57 -1.50 -22.04 16 18 C 0.21 11.74 5.69 71.24 0.41 12.15 16 19 C -0.55 -33.15 9.43 25.60 0.24 -32.91 16 20 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 21 C 0.01 0.38 5.46 84.65 0.46 0.84 16 22 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 23 Si 0.98 44.50 29.54 68.60 2.03 46.52 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.70 7.40 -2.39 -0.02 0.69 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 32 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 35 H 0.11 2.85 8.13 -2.39 -0.02 2.83 16 36 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -70.70 345.26 5.21 -65.49 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.00 Total: 10.09 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 3.54 Total: -13.39 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -1.64 Total: -53.19 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.70 5.21 -65.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869885404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.936 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds