Wall clock time and date at job start Mon Mar 30 2020 19:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.42898 * 113.99824 * 180.02562 * 3 2 1 5 5 C 1.53891 * 113.58893 * 249.21992 * 4 3 2 6 6 C 1.53416 * 86.82627 * 220.45400 * 5 4 3 7 7 C 1.52461 * 128.60727 * 165.09349 * 6 5 4 8 8 C 1.52455 * 128.52044 * 245.01674 * 6 5 4 9 9 H 1.09003 * 117.51871 * 134.86589 * 8 6 5 10 10 C 1.50705 * 117.51121 * 349.79800 * 8 6 5 11 11 O 1.20821 * 120.00355 * 0.02562 * 10 8 6 12 12 O 1.34231 * 119.99761 * 180.02562 * 10 8 6 13 13 C 1.45198 * 116.99838 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47058 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46900 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00426 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99779 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00047 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47201 * 90.00519 * 19 17 15 21 21 H 1.48502 * 109.47320 * 210.00810 * 19 17 15 22 22 H 1.48507 * 109.47346 * 330.00506 * 19 17 15 23 23 C 1.53255 * 87.72073 * 25.01621 * 6 5 4 24 24 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 28 28 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 29 29 H 1.09001 * 112.82863 * 20.32929 * 4 3 2 30 30 H 1.09005 * 113.64648 * 334.92529 * 5 4 3 31 31 H 1.09007 * 113.64787 * 105.92583 * 5 4 3 32 32 H 1.09000 * 117.51272 * 224.95611 * 7 6 5 33 33 H 1.08991 * 117.51255 * 10.07130 * 7 6 5 34 34 H 1.09001 * 109.47239 * 299.99598 * 13 12 10 35 35 H 1.09006 * 109.47232 * 59.99686 * 13 12 10 36 36 H 1.09001 * 109.47104 * 300.00093 * 14 13 12 37 37 H 1.08997 * 109.47210 * 60.00050 * 14 13 12 38 38 H 0.97003 * 120.00145 * 179.97438 * 18 17 15 39 39 H 1.09008 * 113.64752 * 220.48810 * 23 6 5 40 40 H 1.09003 * 113.65071 * 89.48133 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 4.0058 2.0075 1.3178 6 6 4.9782 2.8231 0.4561 7 6 5.8514 4.0040 0.8655 8 6 6.4958 2.7069 0.3683 9 1 6.9450 2.7156 -0.6249 10 6 7.1876 1.8383 1.3871 11 8 6.5407 1.2655 2.2317 12 8 8.5225 1.7009 1.3564 13 6 9.1209 0.8484 2.3680 14 6 10.6382 0.8143 2.1737 15 6 11.2593 -0.0700 3.2241 16 1 10.6344 -0.5592 3.9566 17 6 12.6253 -0.2555 3.2492 18 7 13.3863 0.3398 2.3569 19 14 13.3952 -1.3522 4.5507 20 1 13.4652 -2.7465 4.0447 21 1 14.7649 -0.8681 4.8589 22 1 12.5676 -1.3138 5.7832 23 6 3.9466 2.7439 -0.6745 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.9267 0.5546 -0.3500 30 1 3.3015 2.6199 1.8811 31 1 4.4935 1.2490 1.9303 32 1 5.8767 4.8663 0.1992 33 1 5.9279 4.2287 1.9292 34 1 8.8897 1.2419 3.3578 35 1 8.7203 -0.1612 2.2756 36 1 10.8690 0.4206 1.1839 37 1 11.0390 1.8237 2.2658 38 1 14.3474 0.2096 2.3749 39 1 4.3871 2.5751 -1.6573 40 1 3.2259 3.5616 -0.6669 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869928350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:06 Heat of formation + Delta-G solvation = -114.361103 kcal Electronic energy + Delta-G solvation = -19887.579607 eV Core-core repulsion = 16668.198196 eV Total energy + Delta-G solvation = -3219.381411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87930 -40.43206 -38.35816 -37.38627 -35.47592 -34.36991 -32.35649 -31.54067 -27.56060 -26.77586 -25.65734 -23.83236 -23.20596 -22.97934 -21.78977 -19.51513 -19.05568 -18.22929 -17.91157 -17.54453 -17.16253 -16.66470 -16.48692 -16.22866 -15.35509 -15.09413 -14.75922 -14.43991 -14.37907 -13.87215 -13.60351 -13.25458 -13.19725 -13.07012 -12.95028 -12.79230 -12.62213 -12.58075 -12.25837 -12.04725 -11.88449 -11.63618 -11.53117 -11.47520 -11.40807 -11.23593 -10.72299 -10.63647 -10.35615 -8.29252 -6.42875 1.03760 1.39237 1.41518 1.52162 1.65578 2.37971 2.51233 2.87196 3.04984 3.31415 3.45604 3.66744 3.75786 3.80417 3.96445 4.07392 4.18079 4.18661 4.22665 4.37786 4.49372 4.55216 4.65894 4.75411 4.79233 4.80644 4.88404 4.94892 5.02785 5.09932 5.12724 5.20924 5.26968 5.29718 5.43075 5.56661 5.72891 6.03705 6.30826 6.69270 6.75141 7.27036 8.83425 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.030911 B = 0.003016 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.615736 B = 9281.573729 C = 9899.715278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.388 6.388 4 C 0.064 3.936 5 C -0.129 4.129 6 C -0.127 4.127 7 C -0.110 4.110 8 C -0.151 4.151 9 H 0.158 0.842 10 C 0.479 3.521 11 O -0.536 6.536 12 O -0.364 6.364 13 C 0.091 3.909 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.974 3.026 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.074 4.074 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.268 0.732 39 H 0.094 0.906 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.684 4.616 -7.499 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.308 6.308 4 C 0.006 3.994 5 C -0.166 4.166 6 C -0.128 4.128 7 C -0.146 4.146 8 C -0.170 4.170 9 H 0.176 0.824 10 C 0.324 3.676 11 O -0.426 6.426 12 O -0.280 6.280 13 C 0.018 3.982 14 C -0.006 4.006 15 C -0.589 4.589 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.565 5.565 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.111 4.111 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.790 4.603 -7.288 24.366 hybrid contribution 1.104 -1.009 0.872 1.731 sum -21.686 3.595 -6.416 22.899 Atomic orbital electron populations 1.21753 0.92513 1.03310 1.02876 1.22694 0.96631 0.83309 1.00375 1.87890 1.20731 1.27465 1.94682 1.23588 0.80731 0.98563 0.96537 1.23245 0.96538 0.99369 0.97449 1.21899 0.88044 1.01351 1.01474 1.23078 0.97655 0.90854 1.03036 1.21798 0.94200 1.01530 0.99422 0.82437 1.23449 0.80679 0.79363 0.84068 1.90557 1.66408 1.46944 1.38717 1.86511 1.22917 1.64046 1.54569 1.23146 0.94524 0.91903 0.88592 1.18980 0.87865 0.96797 0.96979 1.21364 0.92989 1.29750 1.14818 0.91775 1.25976 0.97623 0.97305 0.98393 1.70094 1.05655 1.44168 1.36622 0.85311 0.77630 0.78536 0.78756 1.19470 1.20262 1.18784 1.22729 0.94682 0.97247 0.96441 0.92338 0.91691 0.89488 0.93825 0.92517 0.89729 0.88707 0.91432 0.83555 0.88645 0.92354 0.92341 0.97525 0.97511 0.92265 0.88754 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.79 6.50 71.98 0.47 1.26 16 3 O -0.39 -8.20 10.35 -148.98 -1.54 -9.74 16 4 C 0.06 1.31 4.29 31.19 0.13 1.44 16 5 C -0.13 -3.09 7.47 31.03 0.23 -2.86 16 6 C -0.13 -2.65 2.88 -52.32 -0.15 -2.80 16 7 C -0.11 -2.07 10.24 30.46 0.31 -1.76 16 8 C -0.15 -3.67 6.30 -11.68 -0.07 -3.75 16 9 H 0.16 3.13 8.14 -2.39 -0.02 3.11 16 10 C 0.48 16.95 7.74 71.24 0.55 17.50 16 11 O -0.54 -21.19 13.85 21.98 0.30 -20.89 16 12 O -0.36 -15.07 10.22 -51.43 -0.53 -15.60 16 13 C 0.09 4.23 5.40 71.98 0.39 4.62 16 14 C 0.03 1.69 5.35 29.85 0.16 1.85 16 15 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 16 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 19 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 C -0.07 -1.20 7.93 30.98 0.25 -0.95 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.76 7.88 -2.39 -0.02 1.74 16 30 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.07 2.05 5.84 -2.38 -0.01 2.03 16 32 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 35 H 0.06 2.67 8.13 -2.38 -0.02 2.65 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.10 339.42 5.25 -62.85 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.00 Total: 10.27 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 3.70 Total: -17.25 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.28 Total: -55.49 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -1.76 Total: -46.23 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.10 5.25 -62.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869928350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.516 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds