Wall clock time and date at job start Mon Mar 30 2020 19:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 O 1.45200 * 109.47046 * 120.00092 * 2 1 3 13 13 C 1.34226 * 116.99763 * 269.99575 * 12 2 1 14 14 O 1.20821 * 120.00149 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99734 * 179.97438 * 13 12 2 16 16 H 1.08999 * 115.55097 * 34.28378 * 15 13 12 17 17 C 1.52997 * 117.49819 * 248.60958 * 15 13 12 18 18 C 1.52999 * 60.00168 * 252.51194 * 17 15 13 19 19 H 1.09009 * 117.49893 * 107.48787 * 18 17 15 20 20 C 1.52997 * 117.50161 * 252.51316 * 18 17 15 21 21 C 1.53182 * 109.54377 * 248.17659 * 20 18 17 22 22 C 1.53089 * 109.16282 * 183.15212 * 21 20 18 23 23 O 1.42899 * 109.41612 * 57.60443 * 22 21 20 24 24 C 1.42898 * 114.10130 * 298.84338 * 23 22 21 25 25 C 1.53090 * 109.41438 * 61.15655 * 24 23 22 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 30 30 H 1.09004 * 117.50130 * 359.97438 * 17 15 13 31 31 H 1.09001 * 117.49973 * 145.02443 * 17 15 13 32 32 H 1.09002 * 109.54296 * 8.44134 * 20 18 17 33 33 H 1.08994 * 109.52094 * 303.05610 * 21 20 18 34 34 H 1.09004 * 109.52182 * 63.24647 * 21 20 18 35 35 H 1.09001 * 109.48047 * 297.62399 * 22 21 20 36 36 H 1.08999 * 109.48093 * 177.59650 * 22 21 20 37 37 H 1.09002 * 109.48132 * 301.17626 * 24 23 22 38 38 H 1.09002 * 109.49034 * 181.14740 * 24 23 22 39 39 H 1.09000 * 109.52004 * 182.48531 * 25 24 23 40 40 H 1.09000 * 109.52233 * 62.29757 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2810 14 8 1.9975 1.2517 2.2505 15 6 2.7183 -0.5773 3.5495 16 1 3.4109 -1.4080 3.4144 17 6 1.7531 -0.6476 4.7345 18 6 2.9301 0.3295 4.7635 19 1 2.7071 1.3898 4.6448 20 6 4.0983 0.0009 5.6953 21 6 4.1479 1.0232 6.8350 22 6 5.3652 0.7338 7.7171 23 8 6.5504 0.7766 6.9200 24 6 6.5810 -0.1894 5.8675 25 6 5.4125 0.0629 4.9110 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7087 1.1612 -3.4844 30 1 0.7558 -0.2297 4.5970 31 1 1.8110 -1.5245 5.3794 32 1 3.9661 -0.9998 6.1069 33 1 4.2295 2.0277 6.4199 34 1 3.2391 0.9475 7.4321 35 1 5.2633 -0.2551 8.1641 36 1 5.4297 1.4840 8.5052 37 1 6.4950 -1.1905 6.2902 38 1 7.5214 -0.1044 5.3229 39 1 5.4082 -0.6996 4.1321 40 1 5.5197 1.0481 4.4571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:10 Heat of formation + Delta-G solvation = -129.858199 kcal Electronic energy + Delta-G solvation = -20588.385438 eV Core-core repulsion = 17368.332022 eV Total energy + Delta-G solvation = -3220.053416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14747 -39.29019 -37.23457 -35.45426 -33.27105 -33.02368 -31.27933 -29.62921 -26.07406 -25.32742 -24.47807 -23.65988 -21.52887 -20.97267 -20.08882 -19.27691 -17.30283 -16.64461 -16.22972 -16.16759 -15.56961 -15.06243 -14.93672 -14.74535 -14.47472 -13.96708 -13.61615 -13.27610 -12.61554 -12.52779 -12.12122 -12.07523 -11.75630 -11.53282 -11.27924 -11.25962 -11.09925 -11.00351 -10.86482 -10.64996 -10.36621 -10.29861 -10.25878 -10.01191 -9.67264 -9.59611 -9.52451 -8.90094 -8.50298 -6.19106 -4.26002 2.79857 3.23132 3.29463 3.34169 3.52497 3.69100 3.87004 4.30656 4.48493 4.58689 4.68966 4.78771 4.89710 4.99870 5.06316 5.13792 5.18680 5.21226 5.33637 5.48414 5.49257 5.59326 5.61424 5.71269 5.80772 5.88758 5.98260 6.05914 6.13227 6.31961 6.63524 6.87708 6.90869 7.00122 7.17254 7.59646 7.72228 7.93672 8.13751 8.65095 8.89688 9.39647 10.88460 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.003702 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.904417 B = 7561.331979 C = 8063.314946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.353 6.353 13 C 0.481 3.519 14 O -0.522 6.522 15 C -0.158 4.158 16 H 0.129 0.871 17 C -0.147 4.147 18 C -0.117 4.117 19 H 0.119 0.881 20 C -0.057 4.057 21 C -0.149 4.149 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.153 4.153 26 H 0.015 0.985 27 H 0.099 0.901 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.200 -3.171 18.511 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.269 6.269 13 C 0.324 3.676 14 O -0.413 6.413 15 C -0.177 4.177 16 H 0.147 0.853 17 C -0.184 4.184 18 C -0.135 4.135 19 H 0.137 0.863 20 C -0.075 4.075 21 C -0.186 4.186 22 C -0.016 4.016 23 O -0.304 6.304 24 C -0.015 4.015 25 C -0.191 4.191 26 H 0.034 0.966 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.182 -2.583 18.324 19.510 hybrid contribution -0.146 -0.511 -1.120 1.240 sum 6.036 -3.094 17.204 18.493 Atomic orbital electron populations 1.22157 0.97572 1.00104 1.01366 1.20654 0.91404 0.93929 0.77826 0.93595 1.21072 1.32418 1.13455 0.88889 0.91254 1.24895 0.94931 0.95107 0.99096 1.69907 1.36130 1.22616 1.24077 0.86215 0.78638 0.79494 0.81767 1.19462 1.20701 1.20722 1.86470 1.75598 1.43547 1.21238 1.22272 0.74577 0.85396 0.85375 1.90585 1.49086 1.16889 1.84706 1.21801 1.05191 1.03782 0.86932 0.85319 1.23104 0.95469 1.01565 0.98241 1.22471 0.96806 0.98175 0.96079 0.86278 1.20795 0.93182 0.99163 0.94403 1.22223 0.98802 1.00247 0.97356 1.22576 0.84726 1.01221 0.93063 1.87928 1.39653 1.57915 1.44911 1.22605 0.99065 0.91529 0.88342 1.22261 0.94172 1.03973 0.98703 0.96603 0.88218 0.94413 0.92444 0.88125 0.87686 0.90773 0.90633 0.90600 0.93327 0.88957 0.93291 0.88804 0.90406 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.16 0.35 -3.64 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.83 8.90 -34.44 -0.31 -15.13 16 5 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 O -0.35 -8.63 9.86 -39.25 -0.39 -9.01 16 13 C 0.48 10.27 7.71 36.01 0.28 10.54 16 14 O -0.52 -12.54 15.48 -18.75 -0.29 -12.83 16 15 C -0.16 -2.39 5.55 -91.77 -0.51 -2.90 16 16 H 0.13 1.73 7.65 -51.93 -0.40 1.33 16 17 C -0.15 -1.78 9.88 -26.73 -0.26 -2.04 16 18 C -0.12 -1.47 4.67 -90.62 -0.42 -1.89 16 19 H 0.12 1.71 7.64 -51.92 -0.40 1.32 16 20 C -0.06 -0.57 2.43 -90.44 -0.22 -0.79 16 21 C -0.15 -1.32 5.40 -26.59 -0.14 -1.47 16 22 C 0.06 0.51 6.84 37.20 0.25 0.77 16 23 O -0.39 -4.21 10.76 -35.23 -0.38 -4.59 16 24 C 0.06 0.57 6.84 37.20 0.25 0.83 16 25 C -0.15 -1.61 5.21 -26.59 -0.14 -1.75 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 32 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.81 7.42 -51.93 -0.39 0.42 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -31.61 328.34 -8.01 -39.62 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.47 Total: 0.62 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.04 Total: -10.04 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.63 Total: -24.89 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.06 Total: -26.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.61 -8.01 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.241 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds