Wall clock time and date at job start Mon Mar 30 2020 19:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 O 1.45200 * 109.47046 * 120.00092 * 2 1 3 13 13 C 1.34226 * 116.99763 * 269.99575 * 12 2 1 14 14 O 1.20821 * 120.00149 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99734 * 179.97438 * 13 12 2 16 16 H 1.08999 * 115.55097 * 34.28378 * 15 13 12 17 17 C 1.52997 * 117.49819 * 248.60958 * 15 13 12 18 18 C 1.52999 * 60.00168 * 252.51194 * 17 15 13 19 19 H 1.09009 * 117.49893 * 107.48787 * 18 17 15 20 20 C 1.52997 * 117.50161 * 252.51316 * 18 17 15 21 21 C 1.53182 * 109.54377 * 248.17659 * 20 18 17 22 22 C 1.53089 * 109.16282 * 183.15212 * 21 20 18 23 23 O 1.42899 * 109.41612 * 57.60443 * 22 21 20 24 24 C 1.42898 * 114.10130 * 298.84338 * 23 22 21 25 25 C 1.53090 * 109.41438 * 61.15655 * 24 23 22 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 30 30 H 1.09004 * 117.50130 * 359.97438 * 17 15 13 31 31 H 1.09001 * 117.49973 * 145.02443 * 17 15 13 32 32 H 1.09002 * 109.54296 * 8.44134 * 20 18 17 33 33 H 1.08994 * 109.52094 * 303.05610 * 21 20 18 34 34 H 1.09004 * 109.52182 * 63.24647 * 21 20 18 35 35 H 1.09001 * 109.48047 * 297.62399 * 22 21 20 36 36 H 1.08999 * 109.48093 * 177.59650 * 22 21 20 37 37 H 1.09002 * 109.48132 * 301.17626 * 24 23 22 38 38 H 1.09002 * 109.49034 * 181.14740 * 24 23 22 39 39 H 1.09000 * 109.52004 * 182.48531 * 25 24 23 40 40 H 1.09000 * 109.52233 * 62.29757 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0640 2.2810 14 8 1.9975 1.2517 2.2505 15 6 2.7183 -0.5773 3.5495 16 1 3.4109 -1.4080 3.4144 17 6 1.7531 -0.6476 4.7345 18 6 2.9301 0.3295 4.7635 19 1 2.7071 1.3898 4.6448 20 6 4.0983 0.0009 5.6953 21 6 4.1479 1.0232 6.8350 22 6 5.3652 0.7338 7.7171 23 8 6.5504 0.7766 6.9200 24 6 6.5810 -0.1894 5.8675 25 6 5.4125 0.0629 4.9110 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7087 1.1612 -3.4844 30 1 0.7558 -0.2297 4.5970 31 1 1.8110 -1.5245 5.3794 32 1 3.9661 -0.9998 6.1069 33 1 4.2295 2.0277 6.4199 34 1 3.2391 0.9475 7.4321 35 1 5.2633 -0.2551 8.1641 36 1 5.4297 1.4840 8.5052 37 1 6.4950 -1.1905 6.2902 38 1 7.5214 -0.1044 5.3229 39 1 5.4082 -0.6996 4.1321 40 1 5.5197 1.0481 4.4571 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:10 Heat of formation + Delta-G solvation = -148.081024 kcal Electronic energy + Delta-G solvation = -20589.175639 eV Core-core repulsion = 17368.332022 eV Total energy + Delta-G solvation = -3220.843617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58938 -40.38878 -38.49438 -37.20459 -35.36159 -33.93121 -31.98745 -31.74259 -27.53219 -27.09464 -25.68964 -24.46168 -23.11853 -22.12961 -21.13371 -20.77111 -18.94777 -18.59674 -17.54340 -17.02082 -16.87297 -16.76467 -16.46189 -15.73855 -15.59759 -15.08659 -14.75930 -14.51661 -14.30996 -13.98753 -13.63780 -13.25957 -13.23730 -13.01490 -12.87825 -12.84745 -12.43386 -12.27773 -12.16886 -12.07861 -11.84722 -11.69764 -11.61842 -11.37242 -11.10585 -11.03068 -10.91317 -10.63858 -10.41254 -8.32053 -6.49595 1.18549 1.40270 1.41375 1.55281 1.93394 2.38472 2.71101 2.98533 3.03156 3.51500 3.59540 3.74480 3.92558 4.04002 4.12085 4.16193 4.25242 4.37668 4.43722 4.48723 4.61836 4.69041 4.72837 4.77431 4.80492 4.83272 4.84703 4.95223 4.96881 5.13090 5.16647 5.19681 5.23768 5.44948 5.46985 5.58341 5.87924 6.04917 6.32712 6.56199 6.94339 7.22949 8.76137 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.003702 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.904417 B = 7561.331979 C = 8063.314946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.986 3.014 9 H -0.262 1.262 10 H -0.270 1.270 11 H -0.275 1.275 12 O -0.361 6.361 13 C 0.472 3.528 14 O -0.558 6.558 15 C -0.177 4.177 16 H 0.151 0.849 17 C -0.121 4.121 18 C -0.106 4.106 19 H 0.093 0.907 20 C -0.051 4.051 21 C -0.147 4.147 22 C 0.058 3.942 23 O -0.409 6.409 24 C 0.062 3.938 25 C -0.155 4.155 26 H 0.022 0.978 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.272 0.728 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -5.333 19.872 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.186 1.186 10 H -0.195 1.195 11 H -0.201 1.201 12 O -0.277 6.277 13 C 0.318 3.682 14 O -0.451 6.451 15 C -0.196 4.196 16 H 0.169 0.831 17 C -0.158 4.158 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.069 4.069 21 C -0.184 4.184 22 C -0.018 4.018 23 O -0.328 6.328 24 C -0.014 4.014 25 C -0.193 4.193 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.166 0.834 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.667 -4.745 19.713 21.344 hybrid contribution -0.309 0.253 -1.481 1.534 sum 6.358 -4.492 18.232 19.824 Atomic orbital electron populations 1.21974 0.96662 1.00470 1.00768 1.20368 0.92132 0.91961 0.79298 0.97811 1.21334 1.33499 1.13937 0.89930 0.91395 1.25879 0.94650 0.95667 1.02262 1.70024 1.36584 1.23715 1.25254 0.85090 0.78397 0.78402 0.77244 1.18617 1.19498 1.20061 1.86463 1.76047 1.43718 1.21496 1.23537 0.73386 0.85210 0.86105 1.90561 1.50711 1.18579 1.85224 1.21905 1.07724 1.05370 0.84592 0.83104 1.23329 0.94349 1.02463 0.95663 1.22507 0.98456 0.96785 0.94716 0.88875 1.20833 0.91295 1.00878 0.93869 1.22214 1.00128 0.98822 0.97257 1.22742 0.83454 1.02801 0.92823 1.87903 1.40880 1.58650 1.45411 1.22658 0.98563 0.92252 0.87943 1.22261 0.95421 1.02447 0.99182 0.95932 0.89993 0.93376 0.91920 0.89097 0.83411 0.87976 0.92657 0.88760 0.91311 0.87833 0.91177 0.88534 0.90329 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.49 9.33 71.98 0.67 -6.81 16 2 C 0.22 12.29 2.56 29.85 0.08 12.36 16 3 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 4 C -0.55 -31.95 8.90 25.60 0.23 -31.72 16 5 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -53.57 11.32 21.44 0.24 -53.33 16 8 Si 0.99 43.28 29.54 68.60 2.03 45.30 16 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 O -0.36 -18.14 9.86 -51.38 -0.51 -18.65 16 13 C 0.47 20.71 7.71 71.24 0.55 21.26 16 14 O -0.56 -28.19 15.48 21.98 0.34 -27.85 16 15 C -0.18 -5.19 5.55 -11.54 -0.06 -5.25 16 16 H 0.15 3.73 7.65 -2.39 -0.02 3.72 16 17 C -0.12 -2.61 9.88 30.59 0.30 -2.30 16 18 C -0.11 -2.54 4.67 -10.79 -0.05 -2.59 16 19 H 0.09 2.75 7.64 -2.38 -0.02 2.73 16 20 C -0.05 -0.88 2.43 -10.68 -0.03 -0.91 16 21 C -0.15 -2.31 5.40 30.68 0.17 -2.14 16 22 C 0.06 0.83 6.84 72.01 0.49 1.32 16 23 O -0.41 -8.25 10.76 -148.98 -1.60 -9.85 16 24 C 0.06 1.05 6.84 72.01 0.49 1.54 16 25 C -0.16 -3.09 5.21 30.68 0.16 -2.93 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 4.64 6.07 -2.39 -0.01 4.62 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.15 1.97 8.05 -2.39 -0.02 1.96 16 32 H 0.10 1.29 7.90 -2.39 -0.02 1.27 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.53 7.42 -2.39 -0.02 1.51 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.13 328.34 4.96 -66.18 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.01 Total: 15.10 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 3.45 Total: -16.89 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.24 Total: -53.33 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -1.77 Total: -56.36 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -71.13 4.96 -66.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.906 kcal (2) G-P(sol) polarization free energy of solvation -71.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds