Wall clock time and date at job start Mon Mar 30 2020 19:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 O 1.45199 * 109.47039 * 239.99986 * 2 1 3 13 13 C 1.34233 * 117.00343 * 90.00377 * 12 2 1 14 14 O 1.20825 * 119.99677 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00210 * 179.97438 * 13 12 2 16 16 H 1.08995 * 115.54831 * 34.27982 * 15 13 12 17 17 C 1.53000 * 117.50084 * 248.60296 * 15 13 12 18 18 C 1.52996 * 59.99951 * 252.51217 * 17 15 13 19 19 H 1.09006 * 117.49939 * 107.49566 * 18 17 15 20 20 C 1.52998 * 117.50174 * 252.50637 * 18 17 15 21 21 C 1.53173 * 109.54678 * 248.18527 * 20 18 17 22 22 C 1.53093 * 109.16415 * 183.14864 * 21 20 18 23 23 O 1.42909 * 109.41411 * 57.60974 * 22 21 20 24 24 C 1.42907 * 114.09267 * 298.83965 * 23 22 21 25 25 C 1.53091 * 109.41478 * 61.16082 * 24 23 22 26 26 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 27 27 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 28 28 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 30 30 H 1.08999 * 117.49463 * 0.02562 * 17 15 13 31 31 H 1.08998 * 117.49757 * 144.99417 * 17 15 13 32 32 H 1.09006 * 109.54268 * 8.44826 * 20 18 17 33 33 H 1.09005 * 109.52422 * 303.05690 * 21 20 18 34 34 H 1.08997 * 109.52599 * 63.24509 * 21 20 18 35 35 H 1.08999 * 109.48560 * 297.62369 * 22 21 20 36 36 H 1.09003 * 109.47821 * 177.58926 * 22 21 20 37 37 H 1.08994 * 109.48134 * 301.17798 * 24 23 22 38 38 H 1.08997 * 109.48424 * 181.14406 * 24 23 22 39 39 H 1.09000 * 109.52069 * 182.48441 * 25 24 23 40 40 H 1.08996 * 109.52329 * 62.29350 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.1356 -2.2945 3.6038 10 1 3.1433 -0.1956 4.8187 11 1 1.1572 -1.5869 4.8138 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2812 14 8 1.9975 1.2517 -2.2506 15 6 2.7194 -0.5771 -3.5492 16 1 2.3682 -1.5923 -3.7337 17 6 4.1372 -0.2263 -4.0047 18 6 2.9305 0.3295 -4.7634 19 1 2.7062 1.3896 -4.6452 20 6 2.6323 -0.2582 -6.1442 21 6 2.8930 0.8013 -7.2193 22 6 2.5173 0.2303 -8.5892 23 8 1.1480 -0.1782 -8.5742 24 6 0.8549 -1.2016 -7.6207 25 6 1.1637 -0.6881 -6.2120 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7136 1.1647 3.4844 30 1 4.7069 0.4679 -3.3869 31 1 4.7189 -1.0107 -4.4887 32 1 3.2736 -1.1222 -6.3190 33 1 2.2879 1.6846 -7.0144 34 1 3.9486 1.0728 -7.2149 35 1 3.1506 -0.6287 -8.8111 36 1 2.6603 0.9946 -9.3531 37 1 1.4664 -2.0792 -7.8299 38 1 -0.1997 -1.4690 -7.6870 39 1 0.9827 -1.4818 -5.4872 40 1 0.5238 0.1650 -5.9868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:12 Heat of formation + Delta-G solvation = -129.920927 kcal Electronic energy + Delta-G solvation = -20584.973147 eV Core-core repulsion = 17364.917011 eV Total energy + Delta-G solvation = -3220.056136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14931 -39.29452 -37.23529 -35.45333 -33.27081 -33.02774 -31.29228 -29.62575 -26.07736 -25.33438 -24.48353 -23.67021 -21.49360 -20.98458 -20.09574 -19.30152 -17.28023 -16.62207 -16.24786 -16.17985 -15.57050 -15.16947 -14.96036 -14.69281 -14.44709 -13.96203 -13.61817 -13.22075 -12.63436 -12.53337 -12.26441 -11.98183 -11.74199 -11.54287 -11.28346 -11.24950 -11.12293 -11.01183 -10.83127 -10.67827 -10.37055 -10.29638 -10.25953 -10.01138 -9.67711 -9.60064 -9.51918 -8.90064 -8.50293 -6.19258 -4.26040 2.80296 3.22918 3.29132 3.33858 3.52193 3.67878 3.88031 4.30537 4.47925 4.58365 4.68288 4.77968 4.89423 4.99603 5.05675 5.13780 5.17899 5.20795 5.33151 5.47573 5.47933 5.59883 5.60642 5.70436 5.81326 5.87959 5.97140 6.07164 6.12041 6.31579 6.63910 6.88325 6.91185 6.98722 7.17386 7.59758 7.72231 7.93659 8.13780 8.65123 8.89781 9.39521 10.88359 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043255 B = 0.003479 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.161333 B = 8045.926629 C = 8211.659608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.353 6.353 13 C 0.481 3.519 14 O -0.522 6.522 15 C -0.158 4.158 16 H 0.128 0.872 17 C -0.146 4.146 18 C -0.118 4.118 19 H 0.119 0.881 20 C -0.057 4.057 21 C -0.149 4.149 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.153 4.153 26 H 0.099 0.901 27 H 0.016 0.984 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -3.594 -19.247 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.269 6.269 13 C 0.324 3.676 14 O -0.413 6.413 15 C -0.177 4.177 16 H 0.146 0.854 17 C -0.183 4.183 18 C -0.136 4.136 19 H 0.137 0.863 20 C -0.076 4.076 21 C -0.186 4.186 22 C -0.016 4.016 23 O -0.304 6.304 24 C -0.015 4.015 25 C -0.191 4.191 26 H 0.118 0.882 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.518 -3.057 -19.149 19.708 hybrid contribution 0.361 -0.427 1.279 1.396 sum 3.879 -3.485 -17.870 18.615 Atomic orbital electron populations 1.22157 0.97564 1.00099 1.01400 1.20650 0.91402 0.93921 0.77823 0.93614 1.21074 1.32561 1.13315 0.88886 0.91250 1.24903 0.94928 0.95124 0.99099 1.69915 1.36279 1.22447 1.24075 0.86212 0.78618 0.79511 0.81762 1.19461 1.20739 1.20696 1.86471 1.75585 1.43615 1.21192 1.22275 0.74643 0.85397 0.85307 1.90587 1.49026 1.16956 1.84700 1.21793 1.02301 1.01391 0.92239 0.85375 1.23107 0.89563 1.03236 1.02399 1.22471 1.01367 0.99604 0.90136 0.86283 1.20795 0.96593 0.97817 0.92349 1.22222 1.02482 0.99185 0.94740 1.22582 0.83029 0.98961 0.97020 1.87932 1.26760 1.56981 1.58739 1.22603 1.01345 0.89711 0.87888 1.22257 0.96629 1.02667 0.97519 0.88250 0.96526 0.94425 0.92447 0.88026 0.87682 0.90760 0.90639 0.90570 0.93309 0.88944 0.93279 0.88835 0.90462 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.33 37.16 0.35 -3.65 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.83 8.90 -34.44 -0.31 -15.13 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.52 11.33 55.43 0.63 -24.89 16 8 Si 0.91 21.20 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 O -0.35 -8.63 9.86 -39.27 -0.39 -9.02 16 13 C 0.48 10.27 7.71 36.00 0.28 10.54 16 14 O -0.52 -12.54 15.48 -18.75 -0.29 -12.83 16 15 C -0.16 -2.40 5.55 -91.77 -0.51 -2.91 16 16 H 0.13 1.70 7.65 -51.93 -0.40 1.30 16 17 C -0.15 -1.80 9.88 -26.73 -0.26 -2.06 16 18 C -0.12 -1.48 4.67 -90.62 -0.42 -1.90 16 19 H 0.12 1.71 7.64 -51.93 -0.40 1.32 16 20 C -0.06 -0.56 2.43 -90.44 -0.22 -0.78 16 21 C -0.15 -1.32 5.40 -26.59 -0.14 -1.46 16 22 C 0.06 0.51 6.84 37.21 0.25 0.76 16 23 O -0.39 -4.15 10.77 -35.23 -0.38 -4.53 16 24 C 0.06 0.56 6.84 37.20 0.25 0.82 16 25 C -0.15 -1.57 5.21 -26.59 -0.14 -1.71 16 26 H 0.10 2.73 6.08 -51.93 -0.32 2.42 16 27 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.10 1.00 8.05 -51.93 -0.42 0.59 16 32 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -31.62 328.36 -8.01 -39.63 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.47 Total: 0.57 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.04 Total: -10.06 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.63 Total: -24.89 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -1.06 Total: -26.38 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.62 -8.01 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.295 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds