Wall clock time and date at job start Mon Mar 30 2020 19:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 O 1.45199 * 109.47039 * 239.99986 * 2 1 3 13 13 C 1.34233 * 117.00343 * 90.00377 * 12 2 1 14 14 O 1.20825 * 119.99677 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00210 * 179.97438 * 13 12 2 16 16 H 1.08995 * 115.54831 * 34.27982 * 15 13 12 17 17 C 1.53000 * 117.50084 * 248.60296 * 15 13 12 18 18 C 1.52996 * 59.99951 * 252.51217 * 17 15 13 19 19 H 1.09006 * 117.49939 * 107.49566 * 18 17 15 20 20 C 1.52998 * 117.50174 * 252.50637 * 18 17 15 21 21 C 1.53173 * 109.54678 * 248.18527 * 20 18 17 22 22 C 1.53093 * 109.16415 * 183.14864 * 21 20 18 23 23 O 1.42909 * 109.41411 * 57.60974 * 22 21 20 24 24 C 1.42907 * 114.09267 * 298.83965 * 23 22 21 25 25 C 1.53091 * 109.41478 * 61.16082 * 24 23 22 26 26 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 27 27 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 28 28 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 30 30 H 1.08999 * 117.49463 * 0.02562 * 17 15 13 31 31 H 1.08998 * 117.49757 * 144.99417 * 17 15 13 32 32 H 1.09006 * 109.54268 * 8.44826 * 20 18 17 33 33 H 1.09005 * 109.52422 * 303.05690 * 21 20 18 34 34 H 1.08997 * 109.52599 * 63.24509 * 21 20 18 35 35 H 1.08999 * 109.48560 * 297.62369 * 22 21 20 36 36 H 1.09003 * 109.47821 * 177.58926 * 22 21 20 37 37 H 1.08994 * 109.48134 * 301.17798 * 24 23 22 38 38 H 1.08997 * 109.48424 * 181.14406 * 24 23 22 39 39 H 1.09000 * 109.52069 * 182.48441 * 25 24 23 40 40 H 1.08996 * 109.52329 * 62.29350 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.1356 -2.2945 3.6038 10 1 3.1433 -0.1956 4.8187 11 1 1.1572 -1.5869 4.8138 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2812 14 8 1.9975 1.2517 -2.2506 15 6 2.7194 -0.5771 -3.5492 16 1 2.3682 -1.5923 -3.7337 17 6 4.1372 -0.2263 -4.0047 18 6 2.9305 0.3295 -4.7634 19 1 2.7062 1.3896 -4.6452 20 6 2.6323 -0.2582 -6.1442 21 6 2.8930 0.8013 -7.2193 22 6 2.5173 0.2303 -8.5892 23 8 1.1480 -0.1782 -8.5742 24 6 0.8549 -1.2016 -7.6207 25 6 1.1637 -0.6881 -6.2120 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7136 1.1647 3.4844 30 1 4.7069 0.4679 -3.3869 31 1 4.7189 -1.0107 -4.4887 32 1 3.2736 -1.1222 -6.3190 33 1 2.2879 1.6846 -7.0144 34 1 3.9486 1.0728 -7.2149 35 1 3.1506 -0.6287 -8.8111 36 1 2.6603 0.9946 -9.3531 37 1 1.4664 -2.0792 -7.8299 38 1 -0.1997 -1.4690 -7.6870 39 1 0.9827 -1.4818 -5.4872 40 1 0.5238 0.1650 -5.9868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:12 Heat of formation + Delta-G solvation = -148.123075 kcal Electronic energy + Delta-G solvation = -20585.762451 eV Core-core repulsion = 17364.917011 eV Total energy + Delta-G solvation = -3220.845440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58917 -40.38682 -38.49584 -37.20432 -35.36009 -33.93001 -31.98459 -31.74194 -27.53518 -27.09496 -25.70551 -24.45701 -23.08006 -22.15460 -21.14261 -20.77870 -18.95293 -18.54453 -17.58102 -17.04349 -16.86899 -16.77594 -16.46049 -15.71556 -15.56310 -15.10112 -14.73528 -14.48690 -14.28605 -14.11803 -13.58406 -13.26964 -13.23487 -13.00820 -12.89209 -12.84526 -12.43912 -12.27523 -12.16540 -12.07747 -11.84809 -11.68146 -11.63780 -11.36996 -11.09529 -11.04030 -10.91261 -10.63784 -10.41066 -8.32054 -6.49531 1.18478 1.40334 1.41574 1.55501 1.92887 2.38803 2.71082 2.98616 3.03446 3.51451 3.59578 3.74793 3.92484 4.04144 4.10924 4.16315 4.24974 4.37989 4.43745 4.48369 4.62071 4.69459 4.72618 4.77903 4.80624 4.83281 4.84791 4.94895 4.96866 5.12848 5.16526 5.19732 5.23932 5.44935 5.47007 5.57910 5.87584 6.04852 6.32829 6.56385 6.94215 7.22934 8.76227 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043255 B = 0.003479 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.161333 B = 8045.926629 C = 8211.659608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.005 0.995 4 C -0.549 4.549 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.262 1.262 10 H -0.275 1.275 11 H -0.270 1.270 12 O -0.361 6.361 13 C 0.472 3.528 14 O -0.558 6.558 15 C -0.176 4.176 16 H 0.153 0.847 17 C -0.125 4.125 18 C -0.104 4.104 19 H 0.093 0.907 20 C -0.051 4.051 21 C -0.147 4.147 22 C 0.058 3.942 23 O -0.409 6.409 24 C 0.062 3.938 25 C -0.155 4.155 26 H 0.081 0.919 27 H 0.021 0.979 28 H 0.047 0.953 29 H 0.272 0.728 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 -5.615 -20.282 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.023 0.977 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.186 1.186 10 H -0.200 1.200 11 H -0.196 1.196 12 O -0.277 6.277 13 C 0.318 3.682 14 O -0.451 6.451 15 C -0.195 4.195 16 H 0.171 0.829 17 C -0.162 4.162 18 C -0.123 4.123 19 H 0.111 0.889 20 C -0.069 4.069 21 C -0.185 4.185 22 C -0.018 4.018 23 O -0.328 6.328 24 C -0.014 4.014 25 C -0.192 4.192 26 H 0.100 0.900 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.166 0.834 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.943 -5.078 -20.212 21.418 hybrid contribution -0.084 0.295 1.543 1.573 sum 4.859 -4.782 -18.668 19.874 Atomic orbital electron populations 1.21981 0.96781 1.00450 1.00727 1.20362 0.92042 0.92008 0.79307 0.97740 1.21330 1.33643 1.13787 0.89894 0.91364 1.25893 0.94629 0.95695 1.02284 1.70033 1.36735 1.23572 1.25258 0.85081 0.78378 0.78407 0.77209 1.18587 1.20033 1.19560 1.86464 1.76024 1.43789 1.21442 1.23541 0.73466 0.85208 0.86032 1.90562 1.50546 1.18695 1.85267 1.21908 1.05112 1.02654 0.89777 0.82897 1.23323 0.88351 1.03525 1.00978 1.22502 1.01071 0.97978 0.90734 0.88874 1.20833 0.96705 0.98831 0.90523 1.22214 1.03180 0.98177 0.94880 1.22738 0.82260 1.00053 0.96741 1.87907 1.28280 1.57562 1.59080 1.22664 1.02174 0.89937 0.86670 1.22257 0.96577 1.01800 0.98604 0.90001 0.96026 0.93384 0.91924 0.89362 0.83435 0.88033 0.92603 0.88878 0.91347 0.87855 0.91234 0.88447 0.90207 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.56 9.33 71.98 0.67 -6.89 16 2 C 0.22 12.31 2.56 29.85 0.08 12.38 16 3 H 0.00 0.31 7.16 -2.39 -0.02 0.29 16 4 C -0.55 -31.86 8.90 25.60 0.23 -31.64 16 5 H 0.07 3.87 7.81 -2.92 -0.02 3.85 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.56 11.33 21.45 0.24 -53.32 16 8 Si 0.99 43.18 29.54 68.60 2.03 45.20 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 12 O -0.36 -18.13 9.86 -51.45 -0.51 -18.64 16 13 C 0.47 20.70 7.71 71.24 0.55 21.25 16 14 O -0.56 -28.19 15.48 21.97 0.34 -27.85 16 15 C -0.18 -5.14 5.55 -11.54 -0.06 -5.21 16 16 H 0.15 3.70 7.65 -2.39 -0.02 3.69 16 17 C -0.13 -2.78 9.88 30.59 0.30 -2.48 16 18 C -0.10 -2.50 4.67 -10.80 -0.05 -2.55 16 19 H 0.09 2.75 7.64 -2.38 -0.02 2.73 16 20 C -0.05 -0.87 2.43 -10.68 -0.03 -0.90 16 21 C -0.15 -2.30 5.40 30.68 0.17 -2.13 16 22 C 0.06 0.82 6.84 72.01 0.49 1.31 16 23 O -0.41 -8.07 10.77 -148.98 -1.60 -9.68 16 24 C 0.06 1.01 6.84 72.01 0.49 1.50 16 25 C -0.15 -2.96 5.21 30.68 0.16 -2.80 16 26 H 0.08 4.65 6.08 -2.39 -0.01 4.64 16 27 H 0.02 1.06 8.14 -2.38 -0.02 1.05 16 28 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.15 2.08 8.05 -2.39 -0.02 2.06 16 32 H 0.10 1.28 7.90 -2.38 -0.02 1.26 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.47 7.42 -2.39 -0.02 1.45 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.97 328.36 4.95 -66.02 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.01 Total: 15.15 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 3.45 Total: -16.89 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.24 Total: -53.32 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -1.77 Total: -56.17 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -70.97 4.95 -66.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.106 kcal (2) G-P(sol) polarization free energy of solvation -70.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds