Wall clock time and date at job start Mon Mar 30 2020 19:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.46654 * 2 1 4 4 C 1.42899 * 113.99905 * 179.97438 * 3 2 1 5 5 C 1.53892 * 113.58560 * 150.00015 * 4 3 2 6 6 C 1.53259 * 86.88255 * 89.61177 * 5 4 3 7 7 C 1.52465 * 128.57898 * 245.05415 * 6 5 4 8 8 C 1.52460 * 128.58479 * 165.11709 * 6 5 4 9 9 H 1.09001 * 117.54510 * 10.15335 * 8 6 5 10 10 C 1.50704 * 117.50826 * 225.04529 * 8 6 5 11 11 O 1.20825 * 120.00077 * 0.14074 * 10 8 6 12 12 O 1.34225 * 119.99598 * 180.14299 * 10 8 6 13 13 C 1.45206 * 117.00211 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.46590 * 30.00194 * 13 12 10 15 15 C 1.52997 * 109.47226 * 270.00418 * 13 12 10 16 16 C 1.50697 * 109.47178 * 149.99899 * 13 12 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46980 * 89.99582 * 20 18 16 22 22 H 1.48493 * 109.47135 * 209.99651 * 20 18 16 23 23 H 1.48498 * 109.47274 * 330.00048 * 20 18 16 24 24 C 1.53253 * 87.69405 * 25.08186 * 6 5 4 25 25 H 1.09003 * 109.47787 * 60.00315 * 1 2 3 26 26 H 1.09005 * 109.46770 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47409 * 299.99774 * 1 2 3 28 28 H 1.08998 * 109.47409 * 240.00226 * 2 1 3 29 29 H 1.09003 * 109.47787 * 119.99685 * 2 1 3 30 30 H 1.08999 * 112.88841 * 18.83713 * 4 3 2 31 31 H 1.08995 * 113.65158 * 335.10890 * 5 4 3 32 32 H 1.09003 * 113.72696 * 204.11785 * 5 4 3 33 33 H 1.09004 * 117.50923 * 134.95082 * 7 6 5 34 34 H 1.08997 * 117.54493 * 349.83341 * 7 6 5 35 35 H 1.09002 * 109.47153 * 299.99431 * 15 13 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 37 37 H 1.09004 * 109.47261 * 59.99603 * 15 13 12 38 38 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 39 39 H 1.09001 * 113.64531 * 89.41717 * 24 6 5 40 40 H 1.09003 * 113.64639 * 220.42094 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4307 1.4603 0.0006 5 6 3.9483 2.7264 -0.7046 6 6 3.8495 3.4236 0.6567 7 6 2.9392 4.5742 1.0718 8 6 4.4600 4.7512 1.0916 9 1 4.9040 5.3790 0.3190 10 6 5.1380 4.7982 2.4367 11 8 5.1848 3.8060 3.1246 12 8 5.6899 5.9423 2.8704 13 6 6.3255 5.9143 4.1757 14 1 6.7178 4.9156 4.3673 15 6 5.2982 6.2738 5.2509 16 6 7.4546 6.9119 4.2061 17 1 7.6725 7.5076 3.3320 18 6 8.2094 7.0639 5.3498 19 7 7.9438 6.3389 6.4143 20 14 9.6087 8.3010 5.3878 21 1 9.0949 9.6153 5.8503 22 1 10.6637 7.8265 6.3187 23 1 10.1795 8.4447 4.0245 24 6 4.0018 2.0435 1.3052 25 1 -0.3635 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9286 0.5463 -0.3233 31 1 3.2600 3.1239 -1.4504 32 1 4.9690 2.6354 -1.0760 33 1 2.4294 4.4917 2.0317 34 1 2.3830 5.0855 0.2862 35 1 4.9059 7.2725 5.0593 36 1 5.7752 6.2523 6.2308 37 1 4.4814 5.5522 5.2289 38 1 8.4751 6.4456 7.2188 39 1 5.0375 1.7609 1.4939 40 1 3.3562 1.8934 2.1705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205656.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:15 Heat of formation + Delta-G solvation = -89.375550 kcal Electronic energy + Delta-G solvation = -20494.146644 eV Core-core repulsion = 17275.848687 eV Total energy + Delta-G solvation = -3218.297956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31830 -38.99529 -37.07526 -35.44802 -33.34854 -33.11864 -30.78005 -29.55322 -25.78107 -25.31797 -24.54767 -23.07746 -22.62896 -21.17579 -19.45275 -18.45245 -17.03231 -16.78953 -16.43434 -15.77052 -15.49881 -15.22344 -14.83371 -14.41957 -14.11065 -13.84937 -13.26388 -13.05300 -12.54710 -12.44855 -12.18671 -12.02874 -11.74005 -11.68044 -11.45692 -11.27346 -11.16409 -11.03548 -10.80013 -10.48177 -10.35473 -10.26239 -10.02055 -9.74049 -9.58164 -9.49352 -9.34290 -8.86870 -8.46969 -6.16386 -4.23110 2.89924 3.25919 3.30940 3.34813 3.42518 3.59841 3.97982 4.33067 4.54053 4.60600 4.72274 4.86917 4.91503 4.94506 5.04894 5.16192 5.16862 5.22442 5.44045 5.64773 5.69167 5.70219 5.73368 5.81231 5.89129 5.91040 6.11788 6.17722 6.23168 6.28932 6.67987 6.92108 6.95340 7.18061 7.22693 7.62915 7.76355 7.98082 8.17829 8.70517 8.95079 9.42415 10.91089 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.044207 B = 0.003450 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.228801 B = 8113.795430 C = 8266.531833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.064 3.936 5 C -0.098 4.098 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.152 4.152 9 H 0.129 0.871 10 C 0.482 3.518 11 O -0.518 6.518 12 O -0.354 6.354 13 C 0.215 3.785 14 H 0.046 0.954 15 C -0.154 4.154 16 C -0.520 4.520 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.912 3.088 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.101 4.101 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.015 0.985 38 H 0.266 0.734 39 H 0.097 0.903 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -9.926 -13.635 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.006 3.994 5 C -0.135 4.135 6 C -0.121 4.121 7 C -0.150 4.150 8 C -0.171 4.171 9 H 0.147 0.853 10 C 0.324 3.676 11 O -0.408 6.408 12 O -0.270 6.270 13 C 0.163 3.837 14 H 0.064 0.936 15 C -0.212 4.212 16 C -0.558 4.558 17 H 0.087 0.913 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.739 3.261 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.139 4.139 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.297 -10.062 -13.190 20.071 hybrid contribution 0.972 0.484 0.321 1.133 sum -10.325 -9.578 -12.869 19.077 Atomic orbital electron populations 1.21740 0.93850 1.02091 1.03163 1.22511 0.95482 0.84073 0.99985 1.87904 1.19847 1.25958 1.94607 1.22987 0.81495 0.97312 0.97641 1.22774 1.01529 0.94397 0.94784 1.22110 1.02985 0.89154 0.97850 1.22750 0.90040 0.98885 1.03290 1.21749 0.97098 1.02660 0.95632 0.85294 1.22268 0.76400 0.82227 0.86657 1.90571 1.56449 1.36350 1.57479 1.86472 1.65364 1.34740 1.40467 1.20614 0.90196 0.98938 0.73954 0.93633 1.22154 0.97418 0.98207 1.03398 1.21045 1.13475 1.21754 0.99545 0.91335 1.24893 0.97756 0.96386 0.94994 1.69901 1.40076 1.39797 1.03010 0.86271 0.80983 0.80744 0.78123 1.20348 1.20981 1.19632 1.22894 1.01949 0.92179 0.96856 0.91940 0.91250 0.91764 0.93526 0.93316 0.90733 0.90303 0.88321 0.88099 0.87514 0.94456 0.88289 0.96594 0.92433 0.88430 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.15 0.38 -0.78 16 2 C 0.06 0.51 6.50 37.15 0.24 0.75 16 3 O -0.36 -4.35 10.28 -35.23 -0.36 -4.71 16 4 C 0.06 0.72 4.37 -25.81 -0.11 0.61 16 5 C -0.10 -1.07 7.93 -26.13 -0.21 -1.28 16 6 C -0.12 -1.70 2.81 -154.80 -0.44 -2.13 16 7 C -0.11 -1.57 10.24 -26.94 -0.28 -1.85 16 8 C -0.15 -2.48 6.30 -91.98 -0.58 -3.06 16 9 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 10 C 0.48 10.50 7.71 36.01 0.28 10.78 16 11 O -0.52 -12.39 14.36 -18.75 -0.27 -12.66 16 12 O -0.35 -8.82 9.86 -39.25 -0.39 -9.21 16 13 C 0.22 5.96 2.56 -27.89 -0.07 5.89 16 14 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 15 C -0.15 -4.03 9.33 37.16 0.35 -3.68 16 16 C -0.52 -14.95 8.90 -34.44 -0.31 -15.26 16 17 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 20 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.10 -1.44 6.30 -26.14 -0.16 -1.60 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.10 1.45 8.05 -51.93 -0.42 1.03 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -31.65 336.33 -7.90 -39.55 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.55 Total: 0.65 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.00 Total: -9.97 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.63 Total: -25.06 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -1.02 Total: -26.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.65 -7.90 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205656.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.829 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds