Wall clock time and date at job start Mon Mar 30 2020 19:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47367 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47327 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00050 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00110 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00211 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47425 * 180.02562 * 16 15 13 18 18 H 1.09002 * 110.85432 * 308.78812 * 17 16 15 19 19 C 1.54480 * 110.96930 * 72.61442 * 17 16 15 20 20 N 1.46772 * 105.46989 * 143.53716 * 19 17 16 21 21 C 1.34422 * 111.29919 * 342.98645 * 20 19 17 22 22 O 1.21279 * 124.94144 * 180.44192 * 21 20 19 23 23 C 1.51283 * 110.11514 * 0.40486 * 21 20 19 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 26 26 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 27 27 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 28 28 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 29 29 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 30 30 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 31 31 H 1.08998 * 109.47065 * 300.00398 * 12 11 10 32 32 H 1.09001 * 109.46892 * 60.00134 * 12 11 10 33 33 H 0.97004 * 120.00041 * 359.97438 * 15 13 12 34 34 H 1.09007 * 109.47027 * 299.99647 * 16 15 13 35 35 H 1.08993 * 109.47264 * 59.99589 * 16 15 13 36 36 H 1.08998 * 110.24739 * 262.53439 * 19 17 16 37 37 H 1.09000 * 110.24605 * 24.53941 * 19 17 16 38 38 H 0.96996 * 124.34801 * 163.00634 * 20 19 17 39 39 H 1.08996 * 110.48864 * 257.57099 * 23 21 20 40 40 H 1.09004 * 110.59428 * 134.99054 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 6 5.5515 -2.6365 -0.0089 12 6 6.0616 -4.0790 -0.0056 13 6 7.5686 -4.0790 -0.0119 14 8 8.1750 -3.0287 -0.0179 15 7 8.2425 -5.2462 -0.0109 16 6 9.7075 -5.2462 -0.0164 17 6 10.2175 -6.6887 -0.0145 18 1 9.7483 -7.2652 0.7827 19 6 9.9903 -7.3572 -1.3885 20 7 11.1584 -8.2198 -1.6022 21 6 12.1684 -7.8865 -0.7802 22 8 13.2509 -8.4326 -0.7530 23 6 11.7585 -6.7306 0.1055 24 1 -0.4850 0.8401 0.0004 25 1 3.8712 -0.6827 -0.8987 26 1 3.8785 -0.6777 0.8813 27 1 3.6619 -3.1474 0.8900 28 1 3.6545 -3.1533 -0.8899 29 1 5.9115 -2.1255 -0.9018 30 1 5.9182 -2.1199 0.8781 31 1 5.7016 -4.5897 0.8875 32 1 5.6949 -4.5960 -0.8924 33 1 7.7575 -6.0863 -0.0057 34 1 10.0674 -4.7352 -0.9094 35 1 10.0742 -4.7296 0.8705 36 1 9.0786 -7.9544 -1.3713 37 1 9.9318 -6.6007 -2.1710 38 1 11.1967 -8.9379 -2.2532 39 1 12.1948 -5.7995 -0.2561 40 1 12.0559 -6.9144 1.1380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129852771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:33:47 Heat of formation + Delta-G solvation = -101.791769 kcal Electronic energy + Delta-G solvation = -19344.622446 eV Core-core repulsion = 16158.078833 eV Total energy + Delta-G solvation = -3186.543613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91294 -39.71803 -37.30408 -35.25130 -34.80657 -32.65590 -32.13264 -30.21923 -28.44544 -26.65943 -25.20640 -22.17947 -21.50903 -21.02703 -20.24772 -20.04695 -17.87319 -17.34098 -16.82773 -16.51229 -15.98860 -15.72380 -15.47553 -14.94262 -14.25226 -14.10871 -14.08843 -13.81928 -13.64810 -13.04850 -12.86727 -12.65946 -12.35135 -12.07964 -11.79999 -11.76755 -11.62423 -11.13313 -10.76207 -10.56033 -10.42941 -10.03110 -9.84267 -9.67641 -9.66418 -9.44761 -9.35529 -9.13297 -8.50551 -6.01714 -3.99235 2.10074 2.58766 2.79551 2.92629 3.34345 3.41536 3.47273 3.72930 3.79004 4.05767 4.40596 4.48964 4.62787 4.79011 4.86800 4.92577 5.09014 5.16514 5.19195 5.25098 5.33099 5.35410 5.50435 5.74413 6.00003 6.10747 6.13560 6.23519 6.38622 6.45988 6.65814 6.79912 6.97146 7.25677 7.36593 7.49347 7.72798 7.83597 8.11383 8.56971 9.03213 9.61632 11.11718 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.061681 B = 0.002356 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.842104 B =11881.215296 C =12152.084626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.535 6.535 15 N -0.740 5.740 16 C 0.129 3.871 17 C -0.114 4.114 18 H 0.101 0.899 19 C 0.102 3.898 20 N -0.733 5.733 21 C 0.520 3.480 22 O -0.534 6.534 23 C -0.149 4.149 24 H 0.262 0.738 25 H 0.011 0.989 26 H 0.016 0.984 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.401 0.599 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.411 0.589 39 H 0.111 0.889 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.863 -17.261 -1.206 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.179 4.179 13 C 0.300 3.700 14 O -0.410 6.410 15 N -0.394 5.394 16 C 0.005 3.995 17 C -0.133 4.133 18 H 0.119 0.881 19 C -0.023 4.023 20 N -0.389 5.389 21 C 0.306 3.694 22 O -0.411 6.411 23 C -0.190 4.190 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.250 0.750 39 H 0.129 0.871 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.724 -16.549 -1.109 27.332 hybrid contribution -0.011 0.141 -0.354 0.381 sum 21.713 -16.409 -1.463 27.255 Atomic orbital electron populations 1.69922 1.06303 1.26827 1.51443 1.25055 0.94748 0.99252 0.94625 0.86768 0.80424 0.83537 0.78531 1.20328 1.21463 1.18898 1.21180 0.89668 0.94364 1.50535 0.91119 1.19579 0.96912 0.92515 0.96322 1.21476 0.91695 0.99927 1.00924 1.21486 0.97222 0.92853 1.02915 1.21780 0.90072 1.01788 1.04244 1.21100 0.90935 0.83055 0.74885 1.90717 1.70627 1.31333 1.48365 1.46076 1.06623 1.09207 1.77508 1.21303 0.80719 0.94236 1.03284 1.22423 0.95888 0.97041 0.97979 0.88073 1.22246 0.88829 0.94129 0.97087 1.46251 1.15593 1.36613 1.40414 1.20874 0.83513 0.84088 0.80881 1.90780 1.22910 1.57432 1.69961 1.22345 0.95237 0.99224 1.02178 0.92818 0.97066 0.96608 0.92835 0.92874 0.91800 0.91790 0.88922 0.88946 0.76536 0.90899 0.90583 0.89805 0.90342 0.75012 0.87109 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.14 13.96 55.43 0.77 -27.36 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -1.94 5.15 -26.73 -0.14 -2.08 16 11 C -0.11 -1.69 4.50 -26.73 -0.12 -1.81 16 12 C -0.14 -1.53 5.70 -27.88 -0.16 -1.69 16 13 C 0.51 5.80 7.83 -10.99 -0.09 5.71 16 14 O -0.53 -8.50 15.98 5.56 0.09 -8.41 16 15 N -0.74 -4.96 5.50 -60.29 -0.33 -5.30 16 16 C 0.13 0.74 4.98 -4.04 -0.02 0.72 16 17 C -0.11 -0.39 3.16 -88.99 -0.28 -0.67 16 18 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 19 C 0.10 0.32 7.29 -3.12 -0.02 0.30 16 20 N -0.73 -3.74 6.24 -59.20 -0.37 -4.11 16 21 C 0.52 4.12 8.43 -10.86 -0.09 4.03 16 22 O -0.53 -6.73 18.03 5.56 0.10 -6.63 16 23 C -0.15 -0.72 6.42 -26.75 -0.17 -0.89 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.01 0.27 7.58 -51.93 -0.39 -0.13 16 26 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 1.47 8.47 -40.82 -0.35 1.12 16 34 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 37 H 0.08 0.26 7.74 -51.93 -0.40 -0.14 16 38 H 0.41 1.67 8.96 -40.82 -0.37 1.30 16 39 H 0.11 0.48 7.90 -51.93 -0.41 0.07 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -37.12 333.96 -7.52 -44.64 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -6.51 Total: -5.00 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.63 Total: -10.33 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.07 Total: -36.77 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.19 Total: -15.04 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.12 -7.52 -44.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129852771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.151 kcal (2) G-P(sol) polarization free energy of solvation -37.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds