Wall clock time and date at job start Mon Mar 30 2020 19:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47248 * 269.99830 * 3 2 1 5 5 H 1.48508 * 109.47052 * 29.99993 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99895 * 3 2 1 7 7 C 1.37873 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00313 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00190 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47302 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46859 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46988 * 299.99488 * 11 10 9 13 13 N 1.46896 * 109.47285 * 180.02562 * 12 11 10 14 14 C 1.46894 * 111.00183 * 155.00469 * 13 12 11 15 15 C 1.53004 * 109.47281 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.46600 * 305.69913 * 15 14 13 17 17 C 1.54092 * 110.52161 * 183.06773 * 15 14 13 18 18 N 1.47091 * 103.77517 * 241.22792 * 17 15 14 19 19 C 1.34005 * 108.88395 * 0.02562 * 18 17 15 20 20 O 1.21507 * 123.07111 * 179.97438 * 19 18 17 21 21 O 1.33772 * 113.85370 * 0.02562 * 19 18 17 22 22 C 1.53008 * 109.46772 * 60.00612 * 12 11 10 23 23 C 1.53001 * 109.46948 * 300.00604 * 9 7 2 24 24 H 0.97001 * 119.99854 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46644 * 59.99890 * 9 7 2 26 26 H 1.08997 * 109.47414 * 60.00300 * 10 9 7 27 27 H 1.08995 * 109.47123 * 300.00056 * 10 9 7 28 28 H 1.08998 * 109.47039 * 180.02562 * 11 10 9 29 29 H 1.08997 * 109.47244 * 59.99729 * 11 10 9 30 30 H 1.08999 * 109.47399 * 300.00733 * 12 11 10 31 31 H 1.00898 * 110.99918 * 31.04810 * 13 12 11 32 32 H 1.09001 * 109.47499 * 60.00417 * 14 13 12 33 33 H 1.09001 * 109.46957 * 300.00122 * 14 13 12 34 34 H 1.09005 * 110.56319 * 359.80347 * 17 15 14 35 35 H 1.08998 * 110.56445 * 122.50851 * 17 15 14 36 36 H 0.97000 * 125.55387 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47540 * 59.99711 * 22 12 11 38 38 H 1.08995 * 109.46992 * 179.97438 * 22 12 11 39 39 H 1.08997 * 109.47002 * 299.99231 * 23 9 7 40 40 H 1.08998 * 109.47116 * 59.99670 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 6 6.0616 -1.9154 -1.2492 13 7 7.5306 -1.9159 -1.2495 14 6 8.0568 -1.7964 -2.6158 15 6 9.5863 -1.8011 -2.5755 16 1 9.9521 -1.0281 -1.8996 17 6 10.1645 -1.5999 -3.9896 18 7 10.9341 -2.8299 -4.2315 19 6 10.8334 -3.6231 -3.1561 20 8 11.3725 -4.7094 -3.0807 21 8 10.0842 -3.1101 -2.1738 22 6 5.5516 -0.4728 -1.2493 23 6 4.0211 -0.4735 -1.2499 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.6579 -3.1506 -0.8896 27 1 3.6586 -3.1501 0.8903 28 1 5.9150 -3.6641 -0.0002 29 1 5.9149 -2.1225 0.8900 30 1 5.6982 -2.4293 -2.1391 31 1 7.8920 -2.7402 -0.7936 32 1 7.7076 -0.8640 -3.0595 33 1 7.7068 -2.6373 -3.2147 34 1 9.3621 -1.5002 -4.7207 35 1 10.8159 -0.7265 -4.0162 36 1 11.4332 -3.0335 -5.0379 37 1 5.9149 0.0411 -0.3594 38 1 5.9152 0.0410 -2.1391 39 1 3.6575 -0.9880 -2.1394 40 1 3.6577 0.5541 -1.2504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:29 Heat of formation + Delta-G solvation = -84.294173 kcal Electronic energy + Delta-G solvation = -20752.019943 eV Core-core repulsion = 17566.235082 eV Total energy + Delta-G solvation = -3185.784860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88392 -38.58928 -37.56305 -35.18164 -35.08135 -32.51884 -30.90905 -30.16913 -28.57499 -25.47106 -23.65651 -23.09992 -22.37427 -21.87948 -20.42889 -19.01261 -18.42801 -17.40517 -16.87789 -16.63578 -15.73975 -15.33693 -15.14863 -14.66795 -14.59719 -14.05425 -13.87304 -13.38634 -13.23192 -13.15716 -12.67011 -12.58663 -12.47199 -11.75209 -11.49025 -11.42130 -11.05636 -10.99024 -10.79659 -10.61719 -10.49755 -10.03215 -9.82741 -9.79135 -9.52768 -9.02837 -8.89732 -8.54745 -8.42289 -6.05337 -4.03973 2.34539 2.42978 3.15324 3.27081 3.38866 3.41621 3.54268 4.07516 4.40140 4.42596 4.43243 4.75124 4.90932 5.04100 5.11113 5.27404 5.28572 5.35628 5.44080 5.66117 5.92433 6.01789 6.08992 6.16443 6.25284 6.27580 6.35962 6.54638 6.63199 6.69993 6.90736 6.92619 7.00312 7.11195 7.27131 7.38857 7.59526 7.75077 7.81011 8.55393 8.99257 9.57777 11.08181 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.041371 B = 0.003699 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.632135 B = 7567.190484 C = 7973.178731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.014 3.986 10 C -0.096 4.096 11 C -0.120 4.120 12 C 0.092 3.908 13 N -0.686 5.686 14 C 0.052 3.948 15 C 0.070 3.930 16 H 0.127 0.873 17 C 0.069 3.931 18 N -0.738 5.738 19 C 0.644 3.356 20 O -0.527 6.527 21 O -0.321 6.321 22 C -0.106 4.106 23 C -0.120 4.120 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.346 0.654 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.435 0.565 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.503 -0.185 -8.955 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.005 4.005 10 C -0.134 4.134 11 C -0.158 4.158 12 C -0.016 4.016 13 N -0.317 5.317 14 C -0.078 4.078 15 C 0.014 3.986 16 H 0.145 0.855 17 C -0.056 4.056 18 N -0.411 5.411 19 C 0.397 3.603 20 O -0.412 6.412 21 O -0.231 6.231 22 C -0.144 4.144 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.277 0.723 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.504 -0.040 -8.378 22.150 hybrid contribution 0.330 0.224 -0.980 1.058 sum 20.835 0.184 -9.358 22.841 Atomic orbital electron populations 1.69912 1.06333 1.26849 1.51183 1.25046 0.94683 0.99103 0.94578 0.86822 0.79981 0.83532 0.77752 1.20756 1.22704 1.18881 1.21108 0.89080 0.94364 1.50502 0.91004 1.19152 0.96321 0.91828 0.93190 1.21405 0.91634 0.99251 1.01117 1.21774 0.98217 0.98473 0.97345 1.21571 0.84765 0.97281 0.98033 1.60550 1.08960 1.46665 1.15574 1.22344 0.90547 1.02568 0.92334 1.24095 0.96017 0.83270 0.95180 0.85544 1.22860 0.96981 0.88781 0.97004 1.45961 1.55475 1.19954 1.19749 1.18613 0.78326 0.84067 0.79342 1.91080 1.49985 1.19319 1.80826 1.87342 1.62553 1.34001 1.39245 1.21605 0.96996 0.94812 1.00997 1.21984 0.92252 1.00252 1.01314 0.92768 0.95494 0.92906 0.92468 0.93206 0.91498 0.93892 0.83512 0.88388 0.94169 0.88638 0.88498 0.72253 0.91850 0.93629 0.92473 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 3 Si 0.89 21.78 24.37 -169.99 -4.14 17.64 16 4 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 7 C -0.51 -14.21 9.14 -34.44 -0.31 -14.53 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.01 0.32 1.69 -91.77 -0.16 0.16 16 10 C -0.10 -1.84 5.14 -26.73 -0.14 -1.98 16 11 C -0.12 -1.87 5.19 -26.73 -0.14 -2.01 16 12 C 0.09 1.33 2.49 -67.71 -0.17 1.16 16 13 N -0.69 -8.11 6.31 -106.73 -0.67 -8.78 16 14 C 0.05 0.47 5.05 -3.83 -0.02 0.45 16 15 C 0.07 0.52 4.08 -26.16 -0.11 0.41 16 16 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 17 C 0.07 0.32 7.71 -3.15 -0.02 0.29 16 18 N -0.74 -5.08 6.40 -64.73 -0.41 -5.50 16 19 C 0.64 7.53 9.16 53.71 0.49 8.02 16 20 O -0.53 -8.38 18.04 -19.11 -0.34 -8.73 16 21 O -0.32 -3.62 10.51 -37.83 -0.40 -4.02 16 22 C -0.11 -1.73 5.43 -26.70 -0.14 -1.88 16 23 C -0.12 -2.47 4.69 -26.71 -0.13 -2.59 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.63 7.80 -51.93 -0.40 0.23 16 31 H 0.35 4.12 8.08 -39.29 -0.32 3.80 16 32 H 0.10 0.77 7.44 -51.93 -0.39 0.39 16 33 H 0.04 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.10 0.30 7.73 -51.93 -0.40 -0.10 16 35 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.43 2.04 8.96 -40.82 -0.37 1.67 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.66 7.45 -51.93 -0.39 0.27 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -33.61 312.72 -7.63 -41.24 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.21 Total: 0.99 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.94 Total: -10.67 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.31 Total: -41.17 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.74 Total: -12.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.61 -7.63 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.052 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds