Wall clock time and date at job start Mon Mar 30 2020 19:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48503 * 109.47361 * 270.00471 * 3 2 1 5 5 H 1.48501 * 109.46976 * 30.00477 * 3 2 1 6 6 H 1.48500 * 109.47432 * 150.00120 * 3 2 1 7 7 C 1.37879 * 120.00135 * 180.02562 * 2 1 3 8 8 C 1.51337 * 120.89097 * 179.77588 * 7 2 1 9 9 C 1.53232 * 108.68817 * 231.22455 * 8 7 2 10 10 C 1.52956 * 109.40174 * 305.48622 * 9 8 7 11 11 H 1.09000 * 109.41173 * 303.48505 * 10 9 8 12 12 N 1.46502 * 109.35465 * 183.66552 * 10 9 8 13 13 C 1.34777 * 119.99980 * 84.68006 * 12 10 9 14 14 O 1.21280 * 119.99979 * 359.97438 * 13 12 10 15 15 C 1.50702 * 120.00007 * 180.02562 * 13 12 10 16 16 H 1.08995 * 110.59817 * 316.99318 * 15 13 12 17 17 C 1.54939 * 110.66409 * 80.00250 * 15 13 12 18 18 C 1.54601 * 102.92085 * 155.85181 * 17 15 13 19 19 H 1.08996 * 110.31331 * 96.95781 * 18 17 15 20 20 O 1.42899 * 110.30564 * 219.12395 * 18 17 15 21 21 C 1.53997 * 105.13802 * 338.03621 * 18 17 15 22 22 N 1.47902 * 107.05449 * 358.77993 * 21 18 17 23 23 C 1.52955 * 109.82240 * 63.59759 * 10 9 8 24 24 C 1.51266 * 120.85004 * 359.97438 * 7 2 1 25 25 H 0.96993 * 119.99774 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46205 * 111.51819 * 8 7 2 27 27 H 1.09004 * 109.80140 * 351.13298 * 8 7 2 28 28 H 1.09000 * 109.48586 * 185.50064 * 9 8 7 29 29 H 1.09007 * 109.47743 * 65.46295 * 9 8 7 30 30 H 0.97002 * 120.00561 * 264.68448 * 12 10 9 31 31 H 1.09011 * 110.72294 * 274.20210 * 17 15 13 32 32 H 1.08997 * 110.73214 * 37.31272 * 17 15 13 33 33 H 0.96701 * 114.00200 * 179.97438 * 20 18 17 34 34 H 1.08995 * 109.91266 * 118.13080 * 21 18 17 35 35 H 1.08993 * 109.91977 * 239.22943 * 21 18 17 36 36 H 1.00902 * 110.99723 * 264.80961 * 22 21 18 37 37 H 1.09001 * 109.48702 * 176.42014 * 23 10 9 38 38 H 1.08995 * 109.48466 * 56.37709 * 23 10 9 39 39 H 1.09002 * 109.62649 * 8.95820 * 24 7 2 40 40 H 1.09001 * 109.62544 * 248.58167 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 3.5177 -1.2175 -0.0056 9 6 3.9907 -2.1358 -1.1375 10 6 3.3393 -3.5109 -0.9819 11 1 3.5733 -3.9133 0.0037 12 7 3.8587 -4.4136 -2.0123 13 6 5.0160 -5.0737 -1.8087 14 8 5.6276 -4.9200 -0.7728 15 6 5.5507 -6.0018 -2.8688 16 1 4.7482 -6.6098 -3.2864 17 6 6.2680 -5.2016 -3.9850 18 6 7.2409 -6.2421 -4.5856 19 1 6.8064 -6.6967 -5.4758 20 8 8.4915 -5.6271 -4.9016 21 6 7.4293 -7.3002 -3.4827 22 7 6.6308 -6.8598 -2.3182 23 6 1.8223 -3.3863 -1.1331 24 6 1.2678 -2.5151 -0.0005 25 1 -0.4849 0.8400 0.0004 26 1 3.8783 -1.5987 0.9499 27 1 3.9021 -0.2103 -0.1665 28 1 5.0748 -2.2398 -1.0923 29 1 3.7063 -1.7053 -2.0977 30 1 3.3698 -4.5362 -2.8411 31 1 5.5543 -4.8624 -4.7359 32 1 6.8137 -4.3570 -3.5643 33 1 9.1426 -6.2325 -5.2819 34 1 7.0725 -8.2688 -3.8326 35 1 8.4823 -7.3689 -3.2100 36 1 7.2007 -6.3472 -1.6620 37 1 1.3695 -4.3767 -1.0849 38 1 1.5892 -2.9263 -2.0934 39 1 0.2036 -2.3409 -0.1600 40 1 1.4173 -3.0177 0.9551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:35:14 Heat of formation + Delta-G solvation = -126.683182 kcal Electronic energy + Delta-G solvation = -20987.573393 eV Core-core repulsion = 17799.950407 eV Total energy + Delta-G solvation = -3187.622986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36763 -39.61098 -38.32093 -36.29759 -35.41376 -33.48415 -31.52580 -30.80536 -29.77249 -28.62395 -24.77928 -23.49952 -23.16851 -21.89869 -21.32414 -21.10602 -18.99230 -18.04786 -17.82836 -17.38217 -16.66532 -16.42111 -16.18853 -15.75289 -15.05600 -14.89725 -14.61130 -14.55869 -14.25284 -14.04395 -13.91009 -13.63734 -13.30051 -12.90268 -12.80153 -12.69319 -12.65851 -12.52692 -11.97271 -11.90620 -11.82294 -11.52510 -11.22632 -11.05097 -10.77019 -10.62878 -10.54143 -9.93176 -9.64140 -8.18720 -6.12742 1.36473 1.40989 1.49321 1.55961 2.12745 2.39840 3.04617 3.09273 3.36691 3.56662 3.76112 3.88410 4.05265 4.07165 4.18919 4.27682 4.43700 4.47583 4.61753 4.68862 4.82830 4.85847 4.93325 4.94719 5.00184 5.05529 5.11947 5.20301 5.22764 5.52666 5.56136 5.59812 5.67562 5.74881 5.81193 6.14220 6.33831 6.61857 6.87759 6.92669 7.27011 7.45624 8.91918 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033844 B = 0.004146 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.117210 B = 6751.593630 C = 7118.044428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.500 4.500 8 C -0.016 4.016 9 C -0.105 4.105 10 C 0.166 3.834 11 H 0.053 0.947 12 N -0.707 5.707 13 C 0.512 3.488 14 O -0.582 6.582 15 C 0.064 3.936 16 H 0.142 0.858 17 C -0.140 4.140 18 C 0.080 3.920 19 H 0.098 0.902 20 O -0.585 6.585 21 C 0.012 3.988 22 N -0.668 5.668 23 C -0.100 4.100 24 C 0.008 3.992 25 H 0.264 0.736 26 H 0.009 0.991 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.414 0.586 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.398 0.602 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.342 0.658 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.035 0.965 40 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.119 -13.943 -13.407 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.519 4.519 8 C -0.054 4.054 9 C -0.144 4.144 10 C 0.062 3.938 11 H 0.071 0.929 12 N -0.358 5.358 13 C 0.298 3.702 14 O -0.461 6.461 15 C -0.049 4.049 16 H 0.159 0.841 17 C -0.180 4.180 18 C 0.020 3.980 19 H 0.116 0.884 20 O -0.394 6.394 21 C -0.118 4.118 22 N -0.298 5.298 23 C -0.138 4.138 24 C -0.030 4.030 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.251 0.749 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.159 0.841 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 11.698 -13.832 -12.339 21.918 hybrid contribution 0.603 1.495 -0.296 1.639 sum 12.300 -12.336 -12.635 21.520 Atomic orbital electron populations 1.69943 1.07441 1.27544 1.51733 1.25524 0.95332 1.01516 0.94764 0.85851 0.79028 0.79929 0.78779 1.19531 1.21669 1.18654 1.20578 0.90654 0.92105 1.48578 1.19727 0.95206 0.95799 0.94659 1.21773 0.97252 0.95587 0.99796 1.20627 0.93987 0.88687 0.90534 0.92871 1.46071 1.23603 1.44687 1.21413 1.20964 0.80754 0.80471 0.87985 1.90677 1.59312 1.66180 1.29972 1.22750 0.97471 0.92916 0.91755 0.84054 1.23058 0.98535 0.98255 0.98126 1.23151 0.84583 0.92218 0.98076 0.88398 1.86533 1.25429 1.41888 1.85567 1.23679 0.98738 0.99547 0.89818 1.62776 1.13143 1.39745 1.14105 1.21696 0.92584 0.99024 1.00509 1.19308 0.97381 0.93310 0.93010 0.92665 0.97228 0.95029 0.94497 0.92328 0.74924 0.87287 0.92637 0.75094 0.87878 0.89980 0.84082 0.92071 0.92130 0.94647 0.98639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.74 12.73 21.45 0.27 -53.46 16 2 C 0.03 1.50 5.46 84.66 0.46 1.96 16 3 Si 0.94 43.51 27.27 68.60 1.87 45.38 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -11.81 6.47 99.48 0.64 -11.17 16 7 C -0.50 -26.40 5.53 -16.15 -0.09 -26.49 16 8 C -0.02 -0.75 5.58 30.13 0.17 -0.58 16 9 C -0.11 -4.33 5.50 30.66 0.17 -4.16 16 10 C 0.17 6.30 2.35 44.96 0.11 6.40 16 11 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 12 N -0.71 -20.32 5.07 -442.67 -2.24 -22.57 16 13 C 0.51 15.40 7.11 87.66 0.62 16.02 16 14 O -0.58 -23.08 15.51 -3.03 -0.05 -23.12 16 15 C 0.06 1.32 3.70 44.52 0.16 1.49 16 16 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.14 -2.57 6.23 31.80 0.20 -2.37 16 18 C 0.08 1.09 4.36 31.48 0.14 1.23 16 19 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 20 O -0.59 -9.20 13.25 -148.98 -1.97 -11.18 16 21 C 0.01 0.17 7.33 86.45 0.63 0.80 16 22 N -0.67 -14.67 7.24 -484.17 -3.51 -18.17 16 23 C -0.10 -3.89 5.41 30.67 0.17 -3.73 16 24 C 0.01 0.39 5.96 30.12 0.18 0.57 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.03 1.47 4.81 -2.39 -0.01 1.46 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.41 8.79 8.60 -92.71 -0.80 7.99 16 31 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.39 7.99 -2.39 -0.02 1.37 16 33 H 0.40 2.36 9.12 -74.06 -0.68 1.68 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 36 H 0.34 9.11 7.77 -89.69 -0.70 8.41 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.03 1.91 7.07 -2.39 -0.02 1.90 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: -1.00 -69.61 316.91 -3.87 -73.48 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -1.16 Total: 18.51 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 2.92 Total: -8.86 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -5.48 Total: -94.20 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -2.02 Total: -34.30 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.87 Total: 45.38 kcal Total: -69.61 -3.87 -73.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.205 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds