Wall clock time and date at job start Mon Mar 30 2020 19:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48499 * 109.47036 * 240.00097 * 3 2 1 5 5 H 1.48497 * 109.47482 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00342 * 3 2 1 7 7 C 1.38814 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.65291 * 0.03926 * 9 7 2 11 11 C 1.54910 * 104.83647 * 204.09309 * 10 9 7 12 12 C 1.55160 * 101.58083 * 322.99218 * 11 10 9 13 13 H 1.09006 * 110.87066 * 277.06761 * 12 11 10 14 14 N 1.46494 * 110.72203 * 153.86313 * 12 11 10 15 15 C 1.34781 * 120.00310 * 160.02201 * 14 12 11 16 16 O 1.21279 * 119.99459 * 0.02562 * 15 14 12 17 17 C 1.50701 * 120.00151 * 179.97438 * 15 14 12 18 18 O 1.42892 * 109.46813 * 179.97438 * 17 15 14 19 19 C 1.42904 * 113.99807 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.47299 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.49776 * 174.99938 * 20 19 18 22 22 C 1.52997 * 117.49537 * 243.62392 * 20 19 18 23 23 C 1.47027 * 125.64410 * 179.97438 * 9 7 2 24 24 H 0.97007 * 119.99979 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.36840 * 322.93510 * 10 9 7 26 26 H 1.09008 * 110.36707 * 85.25548 * 10 9 7 27 27 H 1.08994 * 111.00682 * 204.91674 * 11 10 9 28 28 H 1.09000 * 110.99969 * 81.06111 * 11 10 9 29 29 H 0.97004 * 120.00348 * 340.02146 * 14 12 11 30 30 H 1.09002 * 109.46779 * 60.00527 * 17 15 14 31 31 H 1.08998 * 109.47198 * 300.00183 * 17 15 14 32 32 H 1.08997 * 109.47235 * 60.00354 * 19 18 17 33 33 H 1.09003 * 109.47065 * 299.99881 * 19 18 17 34 34 H 1.09002 * 115.56020 * 29.30521 * 20 19 18 35 35 H 1.08990 * 117.49990 * 359.97438 * 21 20 19 36 36 H 1.09004 * 117.49237 * 214.97568 * 21 20 19 37 37 H 1.08999 * 117.49685 * 145.02116 * 22 20 19 38 38 H 1.08997 * 117.50044 * 359.97438 * 22 20 19 39 39 H 1.09000 * 109.88415 * 59.56075 * 23 9 7 40 40 H 1.08997 * 109.88357 * 298.39163 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 -0.0008 11 6 -0.4019 -3.9325 0.6106 12 6 0.7783 -4.7524 0.0255 13 1 0.5480 -5.1001 -0.9817 14 7 1.1082 -5.8815 0.8987 15 6 1.8003 -6.9304 0.4116 16 8 2.1504 -6.9393 -0.7495 17 6 2.1402 -8.0916 1.3100 18 8 2.8706 -9.0701 0.5679 19 6 3.2436 -10.2193 1.3311 20 6 4.0167 -11.1941 0.4405 21 6 4.6078 -12.4398 1.1036 22 6 3.3904 -12.5665 0.1854 23 6 1.9317 -3.7275 -0.0016 24 1 -0.4850 0.8401 0.0004 25 1 -0.5995 -1.7590 0.6149 26 1 -0.5272 -2.4865 -1.0193 27 1 -1.3591 -4.3327 0.2768 28 1 -0.3524 -3.8986 1.6989 29 1 0.8285 -5.8742 1.8275 30 1 1.2213 -8.5368 1.6916 31 1 2.7473 -7.7400 2.1442 32 1 2.3474 -10.7083 1.7131 33 1 3.8738 -9.9122 2.1657 34 1 4.5828 -10.7402 -0.3729 35 1 4.4463 -12.5647 2.1742 36 1 5.5629 -12.8055 0.7263 37 1 3.5446 -13.0155 -0.7958 38 1 2.4278 -12.7751 0.6523 39 1 2.5584 -3.8515 0.8816 40 1 2.5279 -3.8638 -0.9038 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265272200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:21 Heat of formation + Delta-G solvation = -49.918902 kcal Electronic energy + Delta-G solvation = -20002.470123 eV Core-core repulsion = 16818.175886 eV Total energy + Delta-G solvation = -3184.294237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01054 -39.40764 -38.71078 -37.27513 -35.63330 -33.79857 -31.21499 -30.08143 -28.59353 -27.15385 -26.12899 -23.24541 -22.46081 -22.05575 -21.66246 -21.22711 -19.05942 -18.33040 -17.75362 -17.48027 -17.05321 -16.70434 -16.38874 -15.92754 -15.51217 -15.34211 -14.96591 -14.59589 -14.21598 -13.80641 -13.53391 -13.43127 -13.35077 -13.01765 -12.70915 -12.50783 -12.37860 -12.21988 -12.06639 -12.05072 -11.84866 -11.44317 -11.38079 -11.24709 -10.84474 -10.76687 -10.49288 -10.14278 -8.93586 -7.80203 -5.25527 1.46006 1.49583 1.55730 1.57764 1.78157 2.48274 2.76392 3.05844 3.29760 3.61030 3.74319 3.86335 3.93852 3.97845 4.02278 4.15123 4.22654 4.23458 4.31915 4.36997 4.53970 4.58130 4.72454 4.74535 4.78485 4.89269 4.99186 5.01955 5.03739 5.22778 5.25392 5.42524 5.51093 5.59782 5.76484 6.12136 6.28399 6.59815 7.08276 7.26136 7.73576 8.36750 9.21371 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.046127 B = 0.002933 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.870875 B = 9545.214436 C = 9900.894213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.624 5.624 10 C 0.151 3.849 11 C -0.124 4.124 12 C 0.149 3.851 13 H 0.075 0.925 14 N -0.699 5.699 15 C 0.505 3.495 16 O -0.578 6.578 17 C 0.052 3.948 18 O -0.399 6.399 19 C 0.090 3.910 20 C -0.179 4.179 21 C -0.157 4.157 22 C -0.179 4.179 23 C 0.128 3.872 24 H 0.250 0.750 25 H 0.085 0.915 26 H -0.012 1.012 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.420 0.580 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.031 0.969 40 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -23.088 9.120 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.351 5.351 10 C 0.026 3.974 11 C -0.163 4.163 12 C 0.043 3.957 13 H 0.093 0.907 14 N -0.353 5.353 15 C 0.293 3.707 16 O -0.457 6.457 17 C -0.027 4.027 18 O -0.319 6.319 19 C 0.014 3.986 20 C -0.198 4.198 21 C -0.194 4.194 22 C -0.216 4.216 23 C 0.001 3.999 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.006 0.994 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.258 0.742 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.049 0.951 40 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 2.542 -22.883 8.107 24.409 hybrid contribution 0.378 1.210 -0.044 1.269 sum 2.920 -21.673 8.063 23.307 Atomic orbital electron populations 1.69996 1.06060 1.25371 1.58104 1.25632 0.96751 1.00882 1.02262 0.85095 0.77171 0.78557 0.78132 1.20890 1.21439 1.20014 1.19383 0.90906 0.83825 1.43408 0.90729 1.44741 1.02971 1.00425 1.86924 1.21807 0.83734 0.94972 0.96932 1.23119 0.97009 0.94866 1.01298 1.21642 0.94574 0.84949 0.94527 0.90654 1.45704 1.56661 1.17783 1.15173 1.21121 0.77094 0.84129 0.88398 1.90721 1.53661 1.80836 1.20479 1.22296 0.99472 0.87873 0.93088 1.87980 1.74900 1.30588 1.38408 1.22246 0.98415 0.84854 0.93060 1.22152 1.04577 0.89884 1.03167 1.23074 0.98072 0.98441 0.99819 1.23170 0.98333 0.98432 1.01700 1.21694 0.95278 0.85619 0.97332 0.94018 0.89756 0.99445 0.88632 0.89339 0.74185 0.86535 0.87209 0.91034 0.91150 0.89001 0.86977 0.87818 0.88675 0.87656 0.95097 0.98042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.13 10.09 21.65 0.22 -55.91 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 3 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.25 -14.30 10.27 84.03 0.86 -13.43 16 8 H 0.07 4.22 7.83 -2.91 -0.02 4.19 16 9 N -0.62 -33.38 3.39 -691.97 -2.35 -35.72 16 10 C 0.15 7.38 5.89 86.86 0.51 7.89 16 11 C -0.12 -4.26 6.69 31.99 0.21 -4.05 16 12 C 0.15 5.37 3.24 46.18 0.15 5.51 16 13 H 0.08 3.00 7.69 -2.38 -0.02 2.98 16 14 N -0.70 -18.58 5.13 -436.90 -2.24 -20.82 16 15 C 0.51 14.89 7.90 87.66 0.69 15.58 16 16 O -0.58 -24.02 16.22 16.01 0.26 -23.76 16 17 C 0.05 0.98 6.42 71.24 0.46 1.43 16 18 O -0.40 -9.95 9.88 -129.94 -1.28 -11.24 16 19 C 0.09 1.45 6.22 71.98 0.45 1.90 16 20 C -0.18 -3.07 6.06 -10.79 -0.07 -3.13 16 21 C -0.16 -1.79 10.25 30.60 0.31 -1.47 16 22 C -0.18 -2.41 10.18 30.60 0.31 -2.10 16 23 C 0.13 5.78 6.99 86.73 0.61 6.39 16 24 H 0.25 14.34 8.31 -92.70 -0.77 13.56 16 25 H 0.08 4.60 5.87 -2.39 -0.01 4.58 16 26 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 27 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.09 2.67 8.00 -2.39 -0.02 2.66 16 29 H 0.42 7.57 8.52 -92.71 -0.79 6.78 16 30 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 0.84 7.88 -2.39 -0.02 0.82 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.18 8.03 -2.39 -0.02 1.16 16 39 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -77.52 332.77 1.83 -75.69 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.23 Total: 12.24 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 4.97 Total: 11.40 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -4.37 Total: -112.45 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.02 Total: -35.00 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -77.52 1.83 -75.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265272200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.769 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds