Wall clock time and date at job start Mon Mar 30 2020 19:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46887 * 299.99265 * 3 2 1 6 6 H 1.48496 * 109.47216 * 59.99508 * 3 2 1 7 7 C 1.38817 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00309 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00169 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85026 * 23.80534 * 10 9 7 12 12 C 1.53783 * 113.61578 * 154.99996 * 10 9 7 13 13 C 1.53784 * 87.07990 * 89.11847 * 12 10 9 14 14 H 1.09001 * 113.61442 * 270.79597 * 13 12 10 15 15 N 1.46496 * 113.61657 * 139.98018 * 13 12 10 16 16 C 1.34777 * 120.00271 * 154.99545 * 15 13 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 13 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 O 1.42899 * 112.85210 * 55.33268 * 19 18 16 21 21 C 1.53785 * 113.61304 * 284.13509 * 19 18 16 22 22 C 1.53954 * 87.01930 * 220.05264 * 21 19 18 23 23 C 1.53778 * 87.11382 * 25.36438 * 22 21 19 24 24 C 1.53779 * 113.61418 * 252.49896 * 10 9 7 25 25 H 0.97000 * 120.00089 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00004 * 0.02562 * 9 7 2 27 27 H 1.08994 * 113.61465 * 334.56843 * 12 10 9 28 28 H 1.09006 * 113.68801 * 203.67449 * 12 10 9 29 29 H 0.97005 * 120.00266 * 335.00128 * 15 13 12 30 30 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 31 31 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 32 32 H 0.96696 * 113.99702 * 309.66757 * 20 19 18 33 33 H 1.08996 * 113.61289 * 334.56795 * 21 19 18 34 34 H 1.08999 * 113.61201 * 105.47201 * 21 19 18 35 35 H 1.09002 * 113.53516 * 270.81007 * 22 21 19 36 36 H 1.08996 * 113.66805 * 139.93301 * 22 21 19 37 37 H 1.08998 * 113.61629 * 220.09648 * 23 22 21 38 38 H 1.08997 * 113.61949 * 89.18787 * 23 22 21 39 39 H 1.09008 * 113.61656 * 156.33217 * 24 10 9 40 40 H 1.08998 * 113.61798 * 25.43327 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0654 -3.5636 0.4078 12 6 1.2598 -4.8285 0.5971 13 6 0.7212 -5.0795 -0.8214 14 1 -0.1901 -4.5256 -1.0467 15 7 0.6250 -6.4991 -1.1699 16 6 -0.2535 -6.9046 -2.1081 17 8 -0.9641 -6.0942 -2.6641 18 6 -0.3529 -8.3651 -2.4663 19 6 -1.4170 -8.5533 -3.5494 20 8 -1.1801 -7.7479 -4.7059 21 6 -2.8579 -8.4621 -3.0199 22 6 -3.1937 -9.6301 -3.9650 23 6 -1.7108 -10.0273 -3.8748 24 6 2.0002 -4.4027 -1.3418 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 -0.0002 27 1 0.4929 -4.5184 1.3068 28 1 1.8853 -5.6369 0.9760 29 1 1.1935 -7.1473 -0.7255 30 1 -0.6295 -8.9382 -1.5813 31 1 0.6101 -8.7142 -2.8389 32 1 -1.0178 -6.8152 -4.5091 33 1 -2.9517 -8.7145 -1.9637 34 1 -3.3605 -7.5305 -3.2799 35 1 -3.5002 -9.3100 -4.9608 36 1 -3.8699 -10.3654 -3.5289 37 1 -1.2886 -10.3574 -4.8240 38 1 -1.4903 -10.7083 -3.0528 39 1 2.8293 -5.0940 -1.4936 40 1 1.8311 -3.7488 -2.1974 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265476368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:25 Heat of formation + Delta-G solvation = -61.729911 kcal Electronic energy + Delta-G solvation = -20514.276432 eV Core-core repulsion = 17329.470032 eV Total energy + Delta-G solvation = -3184.806400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52829 -40.30092 -38.97170 -35.79245 -35.40695 -34.29390 -31.95867 -30.88559 -26.65361 -26.52500 -26.32755 -25.00430 -23.70085 -21.60455 -20.56226 -20.22690 -19.36544 -18.06169 -17.70023 -17.09440 -16.67339 -16.51903 -16.02857 -16.00133 -15.62607 -15.25181 -14.88543 -14.41717 -13.96108 -13.92013 -13.50202 -13.31808 -13.26171 -13.18011 -12.84633 -12.61004 -12.49539 -12.13576 -12.13209 -11.83784 -11.76459 -11.72270 -11.39876 -11.33165 -10.92453 -10.63240 -10.59572 -9.97211 -9.04424 -7.97393 -5.27149 1.46442 1.47699 1.57717 1.60205 2.22668 2.54086 3.15313 3.34975 3.55849 3.64531 3.66631 3.74200 3.83417 3.89605 3.93474 4.20112 4.29820 4.36160 4.42264 4.56401 4.73826 4.79968 4.80663 4.82753 4.86285 5.00403 5.05678 5.14943 5.15828 5.24484 5.30003 5.34875 5.45121 5.50399 5.69127 6.25329 6.60288 6.70162 7.29853 7.32548 8.06291 8.27140 9.26322 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036908 B = 0.003401 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.455119 B = 8231.446294 C = 8564.657780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.724 5.724 10 C 0.149 3.851 11 H 0.077 0.923 12 C -0.138 4.138 13 C 0.131 3.869 14 H 0.069 0.931 15 N -0.699 5.699 16 C 0.505 3.495 17 O -0.589 6.589 18 C -0.151 4.151 19 C 0.108 3.892 20 O -0.570 6.570 21 C -0.168 4.168 22 C -0.135 4.135 23 C -0.114 4.114 24 C -0.171 4.171 25 H 0.251 0.749 26 H 0.371 0.629 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.419 0.581 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.384 0.616 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -24.838 -1.947 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.038 3.962 11 H 0.095 0.905 12 C -0.178 4.178 13 C 0.026 3.974 14 H 0.087 0.913 15 N -0.350 5.350 16 C 0.293 3.707 17 O -0.471 6.471 18 C -0.191 4.191 19 C 0.067 3.933 20 O -0.381 6.381 21 C -0.206 4.206 22 C -0.172 4.172 23 C -0.151 4.151 24 C -0.213 4.213 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.257 0.743 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.812 -24.689 -2.605 24.840 hybrid contribution -0.090 1.957 0.188 1.968 sum 0.722 -22.732 -2.417 22.872 Atomic orbital electron populations 1.69841 1.06819 1.26057 1.59518 1.25640 0.96378 1.01399 1.03687 0.85040 0.78400 0.79591 0.76525 1.18575 1.22425 1.21946 1.19751 0.91689 0.85021 1.40960 0.89984 1.42409 1.05325 1.00954 1.87489 1.21265 0.95767 0.84609 0.94568 0.90469 1.23737 1.00067 0.99160 0.94798 1.22156 0.97392 0.81379 0.96507 0.91268 1.45913 1.39991 1.08691 1.40395 1.21449 0.78636 0.91974 0.78617 1.90608 1.45315 1.57169 1.54004 1.22392 1.03275 0.91503 1.01936 1.22192 0.92562 0.93438 0.85119 1.86290 1.93631 1.25259 1.32904 1.23660 0.97370 0.98943 1.00637 1.22768 0.97342 0.97816 0.99312 1.23102 0.95603 0.92570 1.03812 1.24173 0.98087 0.99545 0.99487 0.94053 0.79708 0.92211 0.85507 0.74254 0.84270 0.85831 0.76317 0.88198 0.93831 0.91596 0.89342 0.90868 0.85512 0.87598 0.94848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.24 -13.51 9.97 84.03 0.84 -12.67 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.72 -36.76 5.31 -320.46 -1.70 -38.46 16 10 C 0.15 5.55 4.56 45.52 0.21 5.76 16 11 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 12 C -0.14 -3.92 7.58 31.12 0.24 -3.68 16 13 C 0.13 4.07 4.12 45.52 0.19 4.26 16 14 H 0.07 2.83 7.46 -2.39 -0.02 2.81 16 15 N -0.70 -15.18 5.35 -440.04 -2.36 -17.54 16 16 C 0.50 12.48 7.57 87.66 0.66 13.15 16 17 O -0.59 -20.78 13.23 15.28 0.20 -20.58 16 18 C -0.15 -2.31 5.33 29.85 0.16 -2.15 16 19 C 0.11 2.21 1.09 -10.26 -0.01 2.20 16 20 O -0.57 -16.14 13.40 -130.67 -1.75 -17.89 16 21 C -0.17 -3.52 7.07 31.18 0.22 -3.30 16 22 C -0.14 -2.29 8.02 31.18 0.25 -2.04 16 23 C -0.11 -1.62 7.48 31.12 0.23 -1.39 16 24 C -0.17 -5.69 7.68 31.12 0.24 -5.45 16 25 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.37 20.68 7.90 -92.71 -0.73 19.95 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.13 2.41 8.12 -2.38 -0.02 2.39 16 29 H 0.42 5.36 8.73 -92.70 -0.81 4.55 16 30 H 0.14 1.14 8.09 -2.39 -0.02 1.12 16 31 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.38 11.96 6.33 -74.06 -0.47 11.49 16 33 H 0.10 1.69 8.06 -2.39 -0.02 1.67 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.13 0.95 8.10 -2.39 -0.02 0.93 16 39 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -74.77 329.34 -0.56 -75.33 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.95 Total: 40.66 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 3.69 Total: -9.46 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -3.77 Total: -116.67 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.55 Total: -38.47 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -74.77 -0.56 -75.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265476368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.598 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds