Wall clock time and date at job start Mon Mar 30 2020 19:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.88600 * 305.70289 * 11 10 9 13 13 C 1.55161 * 111.00498 * 69.58060 * 11 10 9 14 14 C 1.54367 * 102.92155 * 153.54821 * 13 11 10 15 15 N 1.47019 * 107.28888 * 337.86116 * 14 13 11 16 16 C 1.34781 * 125.64718 * 178.87092 * 15 14 13 17 17 O 1.21281 * 119.99402 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.00187 * 0.04403 * 16 15 14 19 19 H 1.08999 * 110.33241 * 55.69594 * 18 16 15 20 20 C 1.54476 * 110.37349 * 293.44872 * 18 16 15 21 21 C 1.54504 * 104.06504 * 217.19066 * 20 18 16 22 22 C 1.54475 * 104.06320 * 359.97438 * 21 20 18 23 23 O 1.44428 * 110.37349 * 177.94746 * 18 16 15 24 24 C 1.47427 * 108.70470 * 358.91006 * 15 14 13 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 1.09003 * 110.71966 * 271.94043 * 13 11 10 30 30 H 1.08996 * 110.71825 * 35.21194 * 13 11 10 31 31 H 1.08998 * 109.89960 * 218.42422 * 14 13 11 32 32 H 1.09008 * 109.97369 * 97.34249 * 14 13 11 33 33 H 1.09000 * 110.51296 * 335.83480 * 20 18 16 34 34 H 1.09004 * 110.51095 * 98.54000 * 20 18 16 35 35 H 1.09001 * 110.51407 * 118.64141 * 21 20 18 36 36 H 1.09001 * 110.51233 * 241.21650 * 21 20 18 37 37 H 1.08999 * 110.37364 * 142.80737 * 22 21 20 38 38 H 1.08992 * 110.37704 * 265.03557 * 22 21 20 39 39 H 1.09001 * 110.36277 * 265.29128 * 24 15 14 40 40 H 1.09001 * 110.46231 * 143.01380 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3594 -4.7290 0.8245 13 6 0.3190 -4.9137 -1.3600 14 6 -0.0584 -6.4082 -1.4438 15 7 0.8603 -7.1411 -0.5606 16 6 0.8440 -8.4705 -0.3393 17 8 1.6533 -8.9698 0.4135 18 6 -0.1794 -9.3365 -1.0274 19 1 -0.1234 -9.2032 -2.1078 20 6 -1.5983 -9.0008 -0.5172 21 6 -2.3134 -10.3695 -0.4686 22 6 -1.2422 -11.3702 -0.9558 23 8 0.0213 -10.7241 -0.6809 24 6 1.8019 -6.1810 0.0437 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 -0.5745 -4.2894 -1.3537 30 1 0.9789 -4.6362 -2.1820 31 1 0.0518 -6.7618 -2.4690 32 1 -1.0864 -6.5518 -1.1108 33 1 -1.5517 -8.5587 0.4780 34 1 -2.1048 -8.3296 -1.2109 35 1 -2.6203 -10.6042 0.5507 36 1 -3.1749 -10.3744 -1.1364 37 1 -1.3179 -12.3064 -0.4026 38 1 -1.3512 -11.5522 -2.0249 39 1 2.7217 -6.1337 -0.5393 40 1 2.0207 -6.4593 1.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267030525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:35 Heat of formation + Delta-G solvation = -68.299671 kcal Electronic energy + Delta-G solvation = -20601.753090 eV Core-core repulsion = 17416.661803 eV Total energy + Delta-G solvation = -3185.091287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58329 -38.99990 -37.37920 -34.73681 -32.72671 -32.08291 -30.52295 -29.81789 -28.80849 -25.61546 -24.07611 -22.72649 -22.39172 -21.72955 -20.07193 -19.48459 -17.58721 -17.02493 -16.78790 -16.30479 -15.86627 -15.26784 -14.80845 -14.46401 -14.05222 -13.94360 -13.73279 -13.47481 -13.14594 -12.79802 -12.59816 -12.50671 -12.14831 -11.98045 -11.72362 -11.55425 -11.21256 -11.10456 -10.88322 -10.69532 -10.54153 -10.40833 -10.27233 -10.06416 -9.74782 -9.65859 -8.90392 -8.66184 -6.95576 -5.79673 -3.08341 2.50902 2.66654 3.42184 3.47736 3.49202 3.73133 4.11122 4.31539 4.50209 4.53803 4.63768 4.70447 4.78865 4.84257 4.97606 5.03959 5.21111 5.27615 5.33447 5.39418 5.47527 5.53954 5.58293 5.61769 5.65605 5.87273 5.99257 6.00352 6.08674 6.13926 6.35227 6.36087 6.46531 6.69884 6.81488 7.44788 7.67982 8.09890 8.39275 9.50819 10.07417 10.42431 11.43225 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.048947 B = 0.003286 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.909859 B = 8518.597820 C = 8882.368337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.120 4.120 14 C 0.094 3.906 15 N -0.614 5.614 16 C 0.532 3.468 17 O -0.524 6.524 18 C 0.062 3.938 19 H 0.094 0.906 20 C -0.145 4.145 21 C -0.153 4.153 22 C 0.041 3.959 23 O -0.346 6.346 24 C 0.114 3.886 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 -19.619 -4.785 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.158 4.158 14 C -0.029 4.029 15 N -0.350 5.350 16 C 0.319 3.681 17 O -0.400 6.400 18 C 0.001 3.999 19 H 0.111 0.889 20 C -0.183 4.183 21 C -0.191 4.191 22 C -0.036 4.036 23 O -0.264 6.264 24 C -0.008 4.008 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.281 -19.974 -4.272 21.097 hybrid contribution -0.149 1.090 -0.183 1.115 sum -5.430 -18.884 -4.455 20.147 Atomic orbital electron populations 1.69651 1.05105 1.25679 1.57840 1.24730 0.95535 0.97698 1.02992 0.86184 0.78685 0.83781 0.77514 1.21719 1.21773 1.20745 1.19229 0.91079 0.84105 1.42636 0.91148 1.42300 1.05843 0.99817 1.89563 1.20552 0.92756 0.84853 0.98240 1.22571 0.98374 0.93653 0.97873 0.89673 1.22657 1.01971 0.92854 0.98325 1.22274 0.93503 0.93426 0.93669 1.48441 1.34392 1.05676 1.46475 1.19787 0.85081 0.80983 0.82227 1.90728 1.40023 1.72535 1.36690 1.22797 0.94024 0.83811 0.99260 0.88890 1.22937 0.93549 0.98477 1.03310 1.22943 0.98867 0.94245 1.03060 1.23511 0.82821 0.96857 1.00391 1.89305 1.32115 1.17947 1.87021 1.22275 0.92247 0.87220 0.99073 0.93516 0.78250 0.95909 0.95959 0.89371 0.90124 0.91522 0.91260 0.90001 0.89287 0.90278 0.90014 0.88623 0.91919 0.91053 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -17.82 5.50 -59.91 -0.33 -18.14 16 10 C 0.16 3.14 5.70 -4.04 -0.02 3.12 16 11 C -0.11 -1.60 3.07 -88.47 -0.27 -1.87 16 12 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.12 -1.58 6.28 -24.87 -0.16 -1.74 16 14 C 0.09 1.00 6.22 -3.04 -0.02 0.98 16 15 N -0.61 -8.12 3.33 -170.49 -0.57 -8.69 16 16 C 0.53 7.80 7.13 -10.99 -0.08 7.72 16 17 O -0.52 -9.98 16.81 -13.65 -0.23 -10.20 16 18 C 0.06 0.69 3.10 -27.11 -0.08 0.61 16 19 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 20 C -0.14 -1.23 5.49 -25.17 -0.14 -1.36 16 21 C -0.15 -1.06 7.09 -25.17 -0.18 -1.23 16 22 C 0.04 0.33 7.63 37.93 0.29 0.62 16 23 O -0.35 -4.46 10.92 -54.44 -0.59 -5.05 16 24 C 0.11 1.63 6.38 -2.53 -0.02 1.61 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.38 9.72 7.63 -40.82 -0.31 9.41 16 27 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.10 7.97 -51.93 -0.41 0.69 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.63 6.41 -51.92 -0.33 0.29 16 33 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 34 H 0.09 0.57 7.23 -51.93 -0.38 0.19 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 40 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 LS Contribution 324.71 15.07 4.89 4.89 Total: -1.00 -33.58 324.71 -8.49 -42.07 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.44 Total: 3.68 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.92 Total: 1.25 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.17 Total: -53.75 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.82 Total: -15.26 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.58 -8.49 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267030525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.230 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds