Wall clock time and date at job start Mon Mar 30 2020 19:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21272 * 120.00513 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99846 * 180.02562 * 16 15 14 19 19 H 1.08993 * 109.64186 * 299.58655 * 18 16 15 20 20 C 1.53030 * 109.64275 * 60.00135 * 18 16 15 21 21 C 1.50064 * 110.14767 * 169.11975 * 20 18 16 22 22 C 1.29438 * 124.07620 * 342.87304 * 21 20 18 23 23 C 1.50070 * 124.07853 * 0.48360 * 22 21 20 24 24 C 1.53044 * 110.13637 * 342.83986 * 23 22 21 25 25 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 28 28 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 29 29 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 30 30 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 31 31 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 32 32 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 33 33 H 1.09003 * 109.35559 * 289.33039 * 20 18 16 34 34 H 1.08998 * 109.35866 * 48.91042 * 20 18 16 35 35 H 1.08008 * 117.96180 * 162.88985 * 21 20 18 36 36 H 1.08003 * 117.96069 * 180.47106 * 22 21 20 37 37 H 1.09003 * 109.35758 * 103.05323 * 23 22 21 38 38 H 1.08993 * 109.36268 * 222.64285 * 23 22 21 39 39 H 1.08997 * 109.65637 * 289.77233 * 24 23 22 40 40 H 1.08997 * 109.63284 * 169.13573 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3957 -6.2123 2.2470 18 6 -0.5162 -4.6985 4.0533 19 1 0.3487 -4.5329 4.6956 20 6 -1.3246 -3.4045 3.9358 21 6 -2.0084 -3.1022 5.2370 22 6 -2.1853 -3.9690 6.1818 23 6 -1.7222 -5.3948 6.1124 24 6 -1.4173 -5.7798 4.6629 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.9722 -3.2261 -1.8952 28 1 3.0428 -4.9390 -1.4164 29 1 1.3838 -4.5509 -3.0904 30 1 0.3131 -4.9201 -0.0155 31 1 1.7553 -5.6711 0.7087 32 1 1.0055 -3.4635 2.3028 33 1 -0.6559 -2.5827 3.6795 34 1 -2.0734 -3.5162 3.1516 35 1 -2.3760 -2.0989 5.3948 36 1 -2.6980 -3.6461 7.0758 37 1 -0.8213 -5.5118 6.7147 38 1 -2.5027 -6.0477 6.5029 39 1 -2.3468 -5.8439 4.0972 40 1 -0.9035 -6.7408 4.6395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278048622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:33 Heat of formation + Delta-G solvation = -75.955589 kcal Electronic energy + Delta-G solvation = -20926.386512 eV Core-core repulsion = 17740.963240 eV Total energy + Delta-G solvation = -3185.423272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86127 -37.70638 -36.90438 -34.86400 -33.46230 -31.67304 -30.96689 -30.56343 -28.25983 -25.44439 -23.76040 -23.43969 -22.42184 -20.09485 -19.64829 -17.85006 -17.64395 -16.89563 -16.59988 -15.82171 -15.44510 -14.94920 -14.36722 -14.14147 -13.83243 -13.64884 -13.38920 -13.31911 -13.00301 -12.86391 -12.66720 -12.26290 -12.12575 -11.84208 -11.39076 -10.91407 -10.87754 -10.86324 -10.71478 -10.53704 -10.26654 -10.11212 -9.79916 -9.41822 -9.27921 -8.98544 -8.94637 -8.51286 -7.04590 -5.82678 -3.12916 2.33690 3.03811 3.37944 3.43386 3.45307 3.67026 4.51512 4.71402 4.77332 4.92954 4.96830 5.27796 5.31790 5.37622 5.42874 5.51999 5.52918 5.55924 5.59169 5.80318 5.87209 5.91189 6.02343 6.03945 6.06426 6.13214 6.24516 6.37763 6.39756 6.51642 6.68691 6.76197 6.98320 6.99583 7.61244 8.02996 8.20789 8.34363 8.67496 9.46700 10.02123 10.38938 11.38801 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.005740 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.030563 B = 4877.276284 C = 6330.434550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.065 0.935 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.712 5.712 16 C 0.514 3.486 17 O -0.555 6.555 18 C -0.106 4.106 19 H 0.095 0.905 20 C -0.086 4.086 21 C -0.142 4.142 22 C -0.167 4.167 23 C -0.090 4.090 24 C -0.098 4.098 25 H 0.256 0.744 26 H 0.389 0.611 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.363 0.637 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.409 0.591 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -9.015 8.319 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.363 5.363 16 C 0.300 3.700 17 O -0.434 6.434 18 C -0.127 4.127 19 H 0.113 0.887 20 C -0.123 4.123 21 C -0.160 4.160 22 C -0.185 4.185 23 C -0.127 4.127 24 C -0.136 4.136 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.208 0.792 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.245 0.755 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.014 -9.459 8.597 12.782 hybrid contribution 0.647 1.451 -0.546 1.679 sum 0.633 -8.008 8.051 11.373 Atomic orbital electron populations 1.69680 1.05056 1.25700 1.56818 1.24734 0.95446 0.97594 1.02630 0.86236 0.78647 0.83985 0.77521 1.21782 1.21783 1.20783 1.19216 0.90899 0.84072 1.43700 0.91241 1.42361 1.06049 0.99009 1.88006 1.20591 0.95049 0.87085 0.91868 0.91729 1.23031 0.86498 0.97192 0.95456 1.86574 1.32172 1.91681 1.25897 1.21526 0.99419 0.96695 0.83008 1.46026 1.50643 1.21680 1.17981 1.20534 0.78128 0.84438 0.86895 1.90645 1.57163 1.22807 1.72792 1.21369 0.99743 0.97238 0.94337 0.88693 1.20453 0.99323 0.96185 0.96315 1.22061 0.99483 0.99230 0.95236 1.22019 1.01871 0.95523 0.99129 1.20471 1.00985 0.94171 0.97038 1.21403 0.99774 0.97656 0.94743 0.93443 0.77659 0.93370 0.95568 0.79186 0.90712 0.92311 0.75484 0.89569 0.90065 0.87623 0.88165 0.91070 0.91059 0.91209 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.87 13.06 55.49 0.72 -26.14 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.71 -16.78 4.51 -53.43 -0.24 -17.02 16 10 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 1.03 6.86 37.16 0.25 1.29 16 13 O -0.56 -10.06 12.64 -35.23 -0.45 -10.51 16 14 C 0.12 2.13 5.12 -4.04 -0.02 2.11 16 15 N -0.71 -12.22 5.29 -60.29 -0.32 -12.54 16 16 C 0.51 8.76 7.14 -10.98 -0.08 8.69 16 17 O -0.56 -11.15 15.90 5.56 0.09 -11.06 16 18 C -0.11 -1.45 2.58 -91.55 -0.24 -1.69 16 19 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 20 C -0.09 -1.19 5.27 -28.17 -0.15 -1.34 16 21 C -0.14 -1.74 9.80 -35.90 -0.35 -2.10 16 22 C -0.17 -1.84 9.80 -35.90 -0.35 -2.20 16 23 C -0.09 -0.93 6.12 -28.16 -0.17 -1.11 16 24 C -0.10 -1.25 4.70 -26.51 -0.12 -1.37 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.39 10.19 7.80 -40.82 -0.32 9.87 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.36 4.71 9.12 45.56 0.42 5.12 16 30 H 0.07 1.53 7.39 -51.93 -0.38 1.14 16 31 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.41 7.01 7.81 -40.82 -0.32 6.69 16 33 H 0.09 1.26 7.89 -51.93 -0.41 0.85 16 34 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.11 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.10 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 40 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -31.13 331.22 -7.51 -38.64 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -5.61 Total: 18.83 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.67 Total: -1.65 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.16 Total: -55.71 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.36 Total: -21.57 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.13 -7.51 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278048622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.313 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds