Wall clock time and date at job start Mon Mar 30 2020 19:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48503 * 109.47016 * 264.98349 * 3 2 1 5 5 H 1.48497 * 109.47010 * 24.98558 * 3 2 1 6 6 H 1.48504 * 109.46939 * 144.98385 * 3 2 1 7 7 C 1.38817 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00107 * 187.32309 * 7 2 1 9 9 N 1.36935 * 119.99549 * 7.32076 * 7 2 1 10 10 C 1.47021 * 125.65188 * 5.84432 * 9 7 2 11 11 C 1.54320 * 107.27594 * 181.02027 * 10 9 7 12 12 C 1.55160 * 102.94030 * 22.19672 * 11 10 9 13 13 O 1.42893 * 111.00781 * 82.60913 * 12 11 10 14 14 C 1.52999 * 111.00541 * 206.42649 * 12 11 10 15 15 N 1.46501 * 109.47517 * 179.97438 * 14 12 11 16 16 C 1.34776 * 120.00539 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99531 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00163 * 179.97438 * 16 15 14 19 19 C 1.53782 * 113.61653 * 279.13647 * 18 16 15 20 20 C 1.53953 * 87.02040 * 220.04950 * 19 18 16 21 21 C 1.53779 * 113.61351 * 181.53000 * 18 16 15 22 22 C 1.47433 * 125.64649 * 185.53800 * 9 7 2 23 23 H 0.97005 * 119.99956 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.88245 * 300.44264 * 10 9 7 25 25 H 1.09005 * 109.88181 * 61.60513 * 10 9 7 26 26 H 1.08994 * 110.72470 * 140.55613 * 11 10 9 27 27 H 1.08998 * 110.72586 * 263.83449 * 11 10 9 28 28 H 0.96697 * 114.00372 * 180.02562 * 13 12 11 29 29 H 1.09006 * 109.46959 * 299.99707 * 14 12 11 30 30 H 1.09003 * 109.47233 * 59.99461 * 14 12 11 31 31 H 0.97008 * 119.99340 * 359.97438 * 15 14 12 32 32 H 1.09003 * 112.84866 * 50.33528 * 18 16 15 33 33 H 1.08998 * 113.61066 * 334.57224 * 19 18 16 34 34 H 1.09002 * 113.61653 * 105.46632 * 19 18 16 35 35 H 1.09000 * 113.53576 * 270.80752 * 20 19 18 36 36 H 1.09001 * 113.73886 * 139.94277 * 20 19 18 37 37 H 1.09002 * 113.61631 * 254.52902 * 21 18 16 38 38 H 1.08998 * 113.61404 * 25.34807 * 21 18 16 39 39 H 1.09000 * 110.36086 * 274.74386 * 22 9 7 40 40 H 1.08996 * 110.36312 * 37.07047 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6037 1.9852 -1.3947 5 1 1.3987 2.6809 0.5914 6 1 3.4907 1.4730 0.8034 7 6 2.0102 -1.2022 0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3339 -2.3833 -0.1501 10 6 -0.1009 -2.5180 -0.4409 11 6 -0.4176 -4.0274 -0.4962 12 6 0.7390 -4.6553 0.3257 13 8 0.4635 -4.5951 1.7265 14 6 1.0068 -6.0954 -0.1161 15 7 2.1027 -6.6546 0.6792 16 6 2.5145 -7.9197 0.4639 17 8 1.9775 -8.5954 -0.3880 18 6 3.6422 -8.4946 1.2817 19 6 5.0371 -8.0779 0.7863 20 6 5.4850 -9.5208 1.0825 21 6 4.0163 -9.9336 0.8894 22 6 1.9252 -3.7304 -0.0536 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6852 -2.0453 0.3485 25 1 -0.3295 -2.0560 -1.4014 26 1 -1.3801 -4.2369 -0.0297 27 1 -0.3997 -4.3879 -1.5247 28 1 1.1585 -4.9755 2.2808 29 1 0.1079 -6.6940 0.0318 30 1 1.2813 -6.1068 -1.1710 31 1 2.5320 -6.1141 1.3609 32 1 3.5004 -8.3571 2.3537 33 1 5.0655 -7.8205 -0.2724 34 1 5.5198 -7.3317 1.4174 35 1 5.8486 -9.6635 2.1001 36 1 6.1573 -9.9346 0.3308 37 1 3.6760 -10.6834 1.6036 38 1 3.7638 -10.1850 -0.1407 39 1 2.3497 -4.0278 -1.0125 40 1 2.6885 -3.7547 0.7241 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278752228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:41 Heat of formation + Delta-G solvation = -67.577849 kcal Electronic energy + Delta-G solvation = -20982.160611 eV Core-core repulsion = 17797.100625 eV Total energy + Delta-G solvation = -3185.059986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38489 -40.14977 -38.30333 -36.78636 -35.25050 -34.03357 -31.47113 -30.04788 -28.05034 -26.93275 -26.48638 -24.99335 -22.44449 -21.68312 -21.41905 -20.33989 -18.99964 -18.74848 -17.61349 -16.87666 -16.71664 -16.65435 -15.91688 -15.82898 -15.67813 -15.20876 -14.96283 -14.35424 -13.92657 -13.84526 -13.60608 -13.37093 -13.24137 -12.98844 -12.92658 -12.76517 -12.38025 -12.12393 -12.08607 -12.00420 -11.80666 -11.69704 -11.40609 -11.26203 -10.95865 -10.71668 -10.67044 -10.16403 -8.88341 -7.82553 -5.21785 1.46050 1.48825 1.56656 1.60944 2.13855 2.49408 3.16076 3.33580 3.46358 3.56412 3.62388 3.69634 3.84033 3.92622 3.95252 3.97339 4.24324 4.46901 4.57477 4.66379 4.74439 4.80699 4.83180 4.89782 4.92597 4.94843 5.06842 5.07212 5.12234 5.21541 5.31860 5.41510 5.55899 5.59158 5.79199 6.20554 6.48293 6.80978 7.08355 7.21741 7.76506 8.40937 9.25290 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.004184 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.083244 B = 6689.909698 C = 7355.027162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.085 0.915 9 N -0.620 5.620 10 C 0.182 3.818 11 C -0.121 4.121 12 C 0.123 3.877 13 O -0.551 6.551 14 C 0.117 3.883 15 N -0.716 5.716 16 C 0.520 3.480 17 O -0.586 6.586 18 C -0.136 4.136 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.125 4.125 22 C 0.113 3.887 23 H 0.246 0.754 24 H 0.025 0.975 25 H -0.004 1.004 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.382 0.618 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.411 0.589 32 H 0.141 0.859 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -17.945 4.551 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.346 5.346 10 C 0.057 3.943 11 C -0.159 4.159 12 C 0.081 3.919 13 O -0.358 6.358 14 C -0.008 4.008 15 N -0.369 5.369 16 C 0.308 3.692 17 O -0.466 6.466 18 C -0.156 4.156 19 C -0.162 4.162 20 C -0.168 4.168 21 C -0.163 4.163 22 C -0.012 4.012 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.014 0.986 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.231 0.769 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.248 0.752 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.365 -17.908 3.756 20.118 hybrid contribution 0.514 1.324 0.169 1.430 sum 8.879 -16.584 3.925 19.216 Atomic orbital electron populations 1.70196 1.06487 1.25252 1.57875 1.25693 0.96513 1.01197 1.02568 0.85089 0.77628 0.78948 0.77622 1.21319 1.22278 1.19059 1.19455 0.91476 0.83879 1.42540 0.89724 1.44636 1.05559 1.01036 1.83345 1.20926 0.85119 0.91453 0.96834 1.22774 0.97972 0.95551 0.99630 1.22431 0.95752 0.91739 0.82026 1.86636 1.48395 1.84764 1.16040 1.21703 0.90652 0.92304 0.96107 1.45915 1.36511 1.14402 1.40053 1.21193 0.83834 0.80852 0.83332 1.90669 1.58737 1.60755 1.36405 1.22965 0.92468 0.98708 1.01506 1.22877 0.92900 0.98872 1.01558 1.22854 0.95582 0.95009 1.03368 1.22802 0.96879 0.94508 1.02094 1.22400 0.94900 0.85288 0.98624 0.94474 0.95640 0.98574 0.89986 0.88818 0.76928 0.90826 0.90900 0.75223 0.84102 0.91214 0.88722 0.87856 0.90776 0.90094 0.91224 0.94825 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 10.46 21.65 0.23 -57.89 16 2 C -0.07 -3.81 5.45 84.86 0.46 -3.35 16 3 Si 0.98 45.77 29.56 68.60 2.03 47.79 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.24 -13.67 10.26 84.04 0.86 -12.81 16 8 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 9 N -0.62 -31.72 3.39 -691.52 -2.35 -34.06 16 10 C 0.18 9.21 5.44 86.73 0.47 9.68 16 11 C -0.12 -4.50 6.15 31.78 0.20 -4.31 16 12 C 0.12 3.98 0.97 -9.32 -0.01 3.97 16 13 O -0.55 -18.08 13.21 -148.98 -1.97 -20.05 16 14 C 0.12 3.14 4.88 86.38 0.42 3.56 16 15 N -0.72 -15.41 5.20 -463.06 -2.41 -17.82 16 16 C 0.52 12.22 7.35 87.66 0.64 12.87 16 17 O -0.59 -18.94 15.91 -3.03 -0.05 -18.99 16 18 C -0.14 -2.09 4.14 -11.02 -0.05 -2.14 16 19 C -0.12 -1.67 7.64 31.18 0.24 -1.43 16 20 C -0.13 -1.48 8.09 31.18 0.25 -1.23 16 21 C -0.12 -1.97 7.40 31.12 0.23 -1.74 16 22 C 0.11 4.33 6.23 86.93 0.54 4.87 16 23 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 24 H 0.03 1.49 6.88 -2.39 -0.02 1.47 16 25 H 0.00 -0.22 7.98 -2.38 -0.02 -0.24 16 26 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.09 3.07 8.04 -2.39 -0.02 3.05 16 28 H 0.38 8.79 7.69 -74.06 -0.57 8.22 16 29 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 31 H 0.41 6.78 7.28 -92.70 -0.68 6.11 16 32 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.46 7.45 -2.39 -0.02 1.44 16 39 H 0.03 1.27 7.99 -2.39 -0.02 1.25 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -74.73 323.82 -0.45 -75.18 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.20 Total: 17.90 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 4.27 Total: 7.94 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -4.53 Total: -109.78 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -2.02 Total: -39.04 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.73 -0.45 -75.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278752228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.602 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds