Wall clock time and date at job start Mon Mar 30 2020 19:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48504 * 109.47153 * 270.00080 * 3 2 1 5 5 H 1.48494 * 109.47123 * 30.00376 * 3 2 1 6 6 H 1.48502 * 109.46820 * 150.00453 * 3 2 1 7 7 C 1.38814 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99862 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99832 * 180.02562 * 9 7 2 11 11 H 1.09010 * 112.84937 * 26.35528 * 10 9 7 12 12 C 1.53778 * 113.61641 * 157.55365 * 10 9 7 13 13 C 1.53776 * 87.07984 * 89.19741 * 12 10 9 14 14 H 1.09001 * 113.61021 * 140.06447 * 13 12 10 15 15 N 1.46496 * 113.61621 * 270.88339 * 13 12 10 16 16 C 1.34774 * 120.00073 * 275.04212 * 15 13 12 17 17 O 1.21280 * 120.00420 * 359.97438 * 16 15 13 18 18 C 1.50705 * 120.00122 * 180.02562 * 16 15 13 19 19 C 1.52995 * 109.47132 * 180.02562 * 18 16 15 20 20 O 1.42894 * 112.85361 * 53.80258 * 19 18 16 21 21 C 1.53782 * 113.61256 * 185.00024 * 19 18 16 22 22 C 1.53778 * 87.08506 * 139.97903 * 21 19 18 23 23 C 1.53783 * 87.17196 * 334.52343 * 22 21 19 24 24 C 1.53777 * 113.68737 * 255.09070 * 10 9 7 25 25 H 0.97003 * 120.00106 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00060 * 359.97438 * 9 7 2 27 27 H 1.09002 * 113.61168 * 334.64941 * 12 10 9 28 28 H 1.08997 * 113.69049 * 203.76084 * 12 10 9 29 29 H 0.97000 * 120.00028 * 95.03914 * 15 13 12 30 30 H 1.08996 * 109.47168 * 59.99612 * 18 16 15 31 31 H 1.09004 * 109.47009 * 300.00061 * 18 16 15 32 32 H 0.96700 * 114.00061 * 311.19479 * 20 19 18 33 33 H 1.08996 * 113.61845 * 25.42699 * 21 19 18 34 34 H 1.09001 * 113.61639 * 254.52356 * 21 19 18 35 35 H 1.09000 * 113.61530 * 89.11360 * 22 21 19 36 36 H 1.08999 * 113.62004 * 219.93961 * 22 21 19 37 37 H 1.09007 * 113.61763 * 140.01805 * 23 22 21 38 38 H 1.09001 * 113.61765 * 270.93031 * 23 22 21 39 39 H 1.09006 * 113.61581 * 156.32615 * 24 10 9 40 40 H 1.08998 * 113.62157 * 25.41933 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 1 3.0487 -3.5736 0.4452 12 6 1.2377 -4.8417 0.5352 13 6 0.7560 -5.0608 -0.9086 14 1 0.6944 -6.1111 -1.1937 15 7 -0.4554 -4.3083 -1.2437 16 6 -1.6680 -4.8176 -0.9494 17 8 -1.7564 -5.8990 -0.4075 18 6 -2.9144 -4.0438 -1.2946 19 6 -4.1460 -4.8387 -0.8563 20 8 -4.1003 -5.2185 0.5205 21 6 -5.4772 -4.1913 -1.2728 22 6 -5.9760 -5.6099 -1.5947 23 6 -4.5030 -5.9975 -1.8065 24 6 2.0540 -4.3724 -1.3627 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3880 -0.0016 27 1 0.4429 -4.5476 1.2208 28 1 1.8483 -5.6582 0.9205 29 1 -0.3849 -3.4436 -1.6774 30 1 -2.9526 -3.8781 -2.3712 31 1 -2.9000 -3.0833 -0.7795 32 1 -3.2654 -5.6263 0.7885 33 1 -5.3948 -3.5482 -2.1490 34 1 -6.0097 -3.7181 -0.4478 35 1 -6.4420 -6.1118 -0.7467 36 1 -6.5771 -5.6661 -2.5022 37 1 -4.2492 -6.9815 -1.4120 38 1 -4.1545 -5.8473 -2.8284 39 1 2.8891 -5.0602 -1.4969 40 1 1.9183 -3.6996 -2.2095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317108577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:02 Heat of formation + Delta-G solvation = -54.522782 kcal Electronic energy + Delta-G solvation = -21228.062450 eV Core-core repulsion = 18043.568574 eV Total energy + Delta-G solvation = -3184.493876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59433 -40.37643 -38.84991 -35.58422 -35.35872 -34.14960 -31.95814 -30.94434 -26.65639 -26.61816 -26.26801 -25.00714 -23.61940 -21.45810 -20.57278 -20.23533 -19.26946 -18.04790 -17.54536 -16.99175 -16.62776 -16.49709 -16.27787 -15.91626 -15.52834 -15.35738 -14.89085 -14.69821 -13.93925 -13.74543 -13.50641 -13.25290 -13.19026 -13.04909 -12.76938 -12.56325 -12.52235 -12.15928 -12.11200 -11.88565 -11.74854 -11.71592 -11.41613 -11.08414 -10.90175 -10.65068 -10.58624 -9.92540 -9.00348 -7.94709 -5.22708 1.49623 1.50568 1.57641 1.58557 2.22714 2.56716 3.17108 3.38083 3.52858 3.64478 3.70075 3.77414 3.83202 3.92465 3.98727 4.19410 4.28502 4.40884 4.42085 4.54280 4.75070 4.80835 4.84715 4.86112 4.90726 5.00123 5.06313 5.08206 5.14464 5.24533 5.33375 5.38052 5.45940 5.52911 5.71654 6.28742 6.53539 6.74305 7.23715 7.35305 8.10013 8.34642 9.27967 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.005171 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.161358 B = 5413.836508 C = 6421.363939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.718 5.718 10 C 0.144 3.856 11 H 0.063 0.937 12 C -0.158 4.158 13 C 0.128 3.872 14 H 0.092 0.908 15 N -0.700 5.700 16 C 0.518 3.482 17 O -0.575 6.575 18 C -0.161 4.161 19 C 0.113 3.887 20 O -0.567 6.567 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.157 4.157 24 C -0.157 4.157 25 H 0.251 0.749 26 H 0.377 0.623 27 H 0.040 0.960 28 H 0.112 0.888 29 H 0.408 0.592 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.384 0.616 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -10.630 -6.634 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.199 1.199 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.081 0.919 12 C -0.198 4.198 13 C 0.023 3.977 14 H 0.110 0.890 15 N -0.350 5.350 16 C 0.306 3.694 17 O -0.457 6.457 18 C -0.201 4.201 19 C 0.072 3.928 20 O -0.379 6.379 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.194 4.194 24 C -0.198 4.198 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.059 0.941 28 H 0.131 0.869 29 H 0.244 0.756 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.238 0.762 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.799 -11.000 -6.239 13.912 hybrid contribution 0.734 1.290 0.179 1.495 sum -5.065 -9.710 -6.060 12.517 Atomic orbital electron populations 1.69773 1.06326 1.26036 1.59222 1.25447 0.96329 1.00663 1.03583 0.85205 0.77642 0.79877 0.77378 1.21294 1.22643 1.19859 1.19652 0.91574 0.85075 1.41365 0.90576 1.42366 1.05512 1.00314 1.87609 1.21484 0.95101 0.85007 0.95063 0.91872 1.23806 0.99923 0.99547 0.96529 1.21781 0.84421 0.95529 0.96002 0.89012 1.45936 1.05138 1.23120 1.60793 1.20976 0.85409 0.85651 0.77322 1.90486 1.87280 1.23161 1.44748 1.22378 0.91685 1.00352 1.05646 1.22170 0.93433 0.95125 0.82112 1.86292 1.43684 1.82557 1.25388 1.23156 0.93450 0.97704 1.02008 1.22701 0.95844 0.95751 1.02174 1.23605 0.97327 0.98452 1.00050 1.23968 0.96388 0.99795 0.99649 0.94005 0.78957 0.94130 0.86943 0.75564 0.85233 0.88576 0.76166 0.86559 0.91382 0.90970 0.89145 0.92401 0.88252 0.86502 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.46 13.06 21.65 0.28 -55.18 16 2 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 4 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.24 -12.86 9.97 84.03 0.84 -12.02 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -33.76 5.02 -320.43 -1.61 -35.37 16 10 C 0.14 5.30 4.55 45.51 0.21 5.50 16 11 H 0.06 2.31 8.12 -2.38 -0.02 2.29 16 12 C -0.16 -5.17 7.62 31.12 0.24 -4.94 16 13 C 0.13 3.86 4.00 45.52 0.18 4.05 16 14 H 0.09 2.60 8.05 -2.39 -0.02 2.58 16 15 N -0.70 -22.16 4.33 -440.05 -1.91 -24.07 16 16 C 0.52 16.40 7.58 87.66 0.66 17.06 16 17 O -0.57 -20.28 13.54 15.91 0.22 -20.07 16 18 C -0.16 -4.32 5.34 29.85 0.16 -4.17 16 19 C 0.11 3.05 1.10 -10.17 -0.01 3.04 16 20 O -0.57 -18.92 13.41 -130.05 -1.74 -20.67 16 21 C -0.13 -2.75 7.47 31.12 0.23 -2.52 16 22 C -0.13 -2.57 8.01 31.12 0.25 -2.32 16 23 C -0.16 -3.63 7.19 31.22 0.22 -3.41 16 24 C -0.16 -4.63 7.57 31.12 0.24 -4.40 16 25 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.38 18.75 6.37 -92.71 -0.59 18.16 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.11 3.00 8.14 -2.39 -0.02 2.99 16 29 H 0.41 13.55 7.83 -92.71 -0.73 12.83 16 30 H 0.13 2.69 8.06 -2.39 -0.02 2.67 16 31 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 32 H 0.38 13.26 6.18 -74.06 -0.46 12.81 16 33 H 0.12 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.10 1.93 8.04 -2.39 -0.02 1.91 16 39 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 40 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 Total: -1.00 -62.74 326.30 0.23 -62.50 By element: Atomic # 1 Polarization: 54.56 SS G_CDS: -0.72 Total: 53.84 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 3.69 Total: -7.32 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -3.23 Total: -114.62 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -1.53 Total: -40.73 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.74 0.23 -62.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317108577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.981 kcal (2) G-P(sol) polarization free energy of solvation -62.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds