Wall clock time and date at job start Mon Mar 30 2020 19:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99639 * 2 1 4 4 H 1.48504 * 109.47073 * 270.00139 * 3 2 1 5 5 H 1.48503 * 109.47197 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.47060 * 150.00185 * 3 2 1 7 7 C 1.37880 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99596 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99862 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46766 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46957 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47083 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99921 * 179.97438 * 12 11 10 14 14 O 1.21590 * 120.00128 * 355.07125 * 13 12 11 15 15 N 1.34777 * 120.00157 * 175.34717 * 13 12 11 16 16 C 1.45313 * 118.83325 * 184.81401 * 15 13 12 17 17 C 1.51250 * 112.27049 * 235.83575 * 16 15 13 18 18 C 1.51279 * 112.98489 * 318.49306 * 17 16 15 19 19 O 1.42894 * 114.33837 * 165.16707 * 18 17 16 20 20 C 1.52122 * 120.85099 * 308.47246 * 18 17 16 21 21 C 1.51969 * 120.67345 * 20.59366 * 18 17 16 22 22 H 1.09004 * 117.35044 * 142.89266 * 21 18 17 23 23 C 1.45537 * 118.82806 * 5.08401 * 15 13 12 24 24 H 0.96994 * 120.00031 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47197 * 59.99352 * 9 7 2 26 26 H 1.09005 * 109.46680 * 299.99585 * 9 7 2 27 27 H 1.08991 * 109.47347 * 59.99480 * 10 9 7 28 28 H 1.09004 * 109.46667 * 299.99485 * 10 9 7 29 29 H 1.09000 * 109.47360 * 59.99830 * 11 10 9 30 30 H 1.09004 * 109.47017 * 299.99277 * 11 10 9 31 31 H 0.96997 * 120.00054 * 359.97438 * 12 11 10 32 32 H 1.09000 * 108.97269 * 356.54249 * 16 15 13 33 33 H 1.08994 * 108.97502 * 115.24347 * 16 15 13 34 34 H 1.08999 * 108.89259 * 197.50119 * 17 16 15 35 35 H 1.08998 * 108.64980 * 79.30842 * 17 16 15 36 36 H 0.96700 * 114.00634 * 33.48727 * 19 18 17 37 37 H 1.08998 * 117.53699 * 2.92225 * 20 18 17 38 38 H 1.08993 * 117.53965 * 217.65515 * 20 18 17 39 39 H 1.08997 * 109.21245 * 260.80913 * 23 15 13 40 40 H 1.09003 * 109.21507 * 20.18228 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5117 -1.1939 0.0000 10 6 4.0217 -2.6363 -0.0014 11 6 5.5517 -2.6362 -0.0014 12 7 6.0402 -4.0175 -0.0022 13 6 7.3652 -4.2636 -0.0029 14 8 8.1545 -3.3432 -0.0933 15 7 7.8153 -5.5305 0.0912 16 6 9.2465 -5.7599 0.1947 17 6 9.7585 -6.6848 -0.8870 18 6 8.8371 -7.8559 -1.1478 19 8 9.1041 -8.5557 -2.3647 20 6 8.3510 -8.7355 -0.0057 21 6 7.3750 -7.7984 -0.7373 22 1 6.6494 -8.2674 -1.4020 23 6 6.8511 -6.6205 0.0794 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6805 0.8904 26 1 3.8752 -0.6794 -0.8895 27 1 3.6587 -3.1492 -0.8919 28 1 3.6581 -3.1511 0.8880 29 1 5.9151 -2.1232 0.8890 30 1 5.9150 -2.1216 -0.8910 31 1 5.4099 -4.7548 -0.0021 32 1 9.7651 -4.8043 0.1164 33 1 9.4653 -6.2015 1.1668 34 1 10.7360 -7.0662 -0.5917 35 1 9.8707 -6.1144 -1.8090 36 1 10.0399 -8.5804 -2.6072 37 1 8.6515 -8.4604 1.0052 38 1 8.2614 -9.8049 -0.1963 39 1 6.6666 -6.9474 1.1027 40 1 5.9170 -6.2685 -0.3586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328566899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:22 Heat of formation + Delta-G solvation = -51.746120 kcal Electronic energy + Delta-G solvation = -20344.441238 eV Core-core repulsion = 17160.067767 eV Total energy + Delta-G solvation = -3184.373471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99456 -39.19595 -36.20311 -35.53939 -33.77421 -33.44977 -32.16154 -31.02807 -27.36418 -26.81760 -24.49418 -22.70692 -22.08423 -20.91295 -20.41605 -18.88780 -18.53068 -17.07100 -16.82679 -16.35152 -15.93134 -15.28784 -14.94147 -14.62928 -14.40960 -14.27848 -13.91058 -13.77996 -13.45375 -13.14391 -12.70348 -12.48950 -12.03488 -11.98869 -11.86617 -11.67716 -11.43008 -11.03720 -10.88693 -10.48605 -10.23849 -9.99925 -9.82621 -9.68711 -9.66178 -9.22235 -9.05270 -8.62030 -8.54847 -6.05800 -4.04490 2.55329 3.16420 3.20513 3.32182 3.39616 3.44113 3.60934 3.89667 4.17795 4.28820 4.41022 4.45139 4.60096 4.84838 4.94172 5.15356 5.21942 5.28424 5.32343 5.44873 5.47500 5.53894 5.61473 5.68690 5.70648 5.72108 6.03822 6.33051 6.41164 6.47082 6.66743 6.81761 6.87162 7.18327 7.23943 7.37371 7.76066 7.94589 8.50576 8.60543 8.98059 9.56521 11.07464 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039090 B = 0.003194 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.130858 B = 8765.497085 C = 9169.272251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.131 3.869 12 N -0.740 5.740 13 C 0.702 3.298 14 O -0.590 6.590 15 N -0.626 5.626 16 C 0.133 3.867 17 C -0.125 4.125 18 C 0.082 3.918 19 O -0.536 6.536 20 C -0.196 4.196 21 C -0.150 4.150 22 H 0.120 0.880 23 C 0.143 3.857 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.395 0.605 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.382 0.618 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.948 -18.223 0.106 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.008 3.992 12 N -0.396 5.396 13 C 0.403 3.597 14 O -0.469 6.469 15 N -0.364 5.364 16 C 0.009 3.991 17 C -0.163 4.163 18 C 0.041 3.959 19 O -0.341 6.341 20 C -0.233 4.233 21 C -0.169 4.169 22 H 0.138 0.862 23 C 0.019 3.981 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.230 0.770 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.713 -17.486 0.079 26.350 hybrid contribution 0.492 0.402 -0.140 0.650 sum 20.204 -17.084 -0.060 26.459 Atomic orbital electron populations 1.69910 1.06327 1.26960 1.51053 1.25029 0.94744 0.99244 0.94465 0.86775 0.80411 0.83505 0.78605 1.20236 1.21394 1.18858 1.21100 0.89318 0.94505 1.51057 0.91013 1.19498 0.97234 0.91429 0.96703 1.21708 0.90650 1.01058 1.01694 1.21548 0.95758 0.80049 1.01890 1.45547 1.04798 1.10245 1.79045 1.15970 0.83203 0.82765 0.77762 1.90895 1.55077 1.43001 1.57878 1.46437 1.06694 1.04612 1.78629 1.20540 0.80354 1.01052 0.97192 1.21185 0.98436 0.95199 1.01511 1.20722 0.95620 0.93751 0.85818 1.86519 1.31118 1.76313 1.40171 1.23791 1.04053 0.98135 0.97364 1.22752 0.93170 0.98951 1.02002 0.86153 1.20799 0.91766 0.85976 0.99510 0.92698 0.96267 0.96700 0.92156 0.92119 0.91937 0.91845 0.76852 0.87724 0.92043 0.89709 0.90165 0.77049 0.88147 0.87900 0.90784 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C 0.13 2.21 5.68 -4.04 -0.02 2.19 16 12 N -0.74 -10.61 5.40 -65.22 -0.35 -10.96 16 13 C 0.70 10.63 8.21 -86.92 -0.71 9.91 16 14 O -0.59 -11.12 15.54 5.29 0.08 -11.04 16 15 N -0.63 -7.11 3.02 -182.45 -0.55 -7.66 16 16 C 0.13 1.26 6.03 -5.56 -0.03 1.22 16 17 C -0.12 -0.93 5.74 -28.48 -0.16 -1.10 16 18 C 0.08 0.68 3.22 -92.46 -0.30 0.39 16 19 O -0.54 -4.63 13.66 -35.23 -0.48 -5.11 16 20 C -0.20 -1.42 9.63 -26.75 -0.26 -1.67 16 21 C -0.15 -1.29 6.22 -90.92 -0.57 -1.85 16 22 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 23 C 0.14 1.27 6.04 -4.76 -0.03 1.24 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.40 4.64 5.97 -40.82 -0.24 4.40 16 32 H 0.10 1.17 6.73 -51.93 -0.35 0.82 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.38 1.66 8.92 45.56 0.41 2.07 16 37 H 0.10 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 40 H 0.08 0.71 5.85 -51.93 -0.30 0.41 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -34.63 323.07 -8.59 -43.22 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.49 Total: 2.12 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.77 Total: -5.51 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.13 Total: -45.66 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.40 Total: -16.16 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.63 -8.59 -43.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328566899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.525 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds