Wall clock time and date at job start Mon Mar 30 2020 19:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47137 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.46884 * 30.00012 * 3 2 1 6 6 H 1.48502 * 109.47201 * 149.99512 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 13 13 O 1.42901 * 109.47681 * 64.99815 * 12 10 9 14 14 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 15 15 N 1.46499 * 109.47198 * 54.99919 * 14 10 9 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 10 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 C 1.52999 * 109.47004 * 179.97438 * 18 16 15 20 20 H 1.09004 * 110.34514 * 52.70946 * 19 18 16 21 21 C 1.51102 * 110.39142 * 290.30284 * 19 18 16 22 22 C 1.30518 * 111.10742 * 224.75585 * 21 19 18 23 23 C 1.51105 * 111.10626 * 359.97438 * 22 21 19 24 24 C 1.54634 * 110.38897 * 174.99569 * 19 18 16 25 25 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46993 * 184.99854 * 12 10 9 28 28 H 1.09003 * 109.47405 * 304.99577 * 12 10 9 29 29 H 0.96693 * 114.00495 * 179.97438 * 13 12 10 30 30 H 1.09009 * 109.46730 * 294.99706 * 14 10 9 31 31 H 1.08998 * 109.46846 * 175.00251 * 14 10 9 32 32 H 0.97001 * 119.99790 * 359.97438 * 15 14 10 33 33 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 34 34 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 35 35 H 1.08003 * 124.44430 * 44.74748 * 21 19 18 36 36 H 1.08006 * 124.45110 * 179.97438 * 22 21 19 37 37 H 1.09000 * 110.38862 * 257.63281 * 23 22 21 38 38 H 1.08994 * 110.48312 * 135.29954 * 23 22 21 39 39 H 1.08999 * 111.04097 * 261.47462 * 24 19 18 40 40 H 1.09002 * 111.03577 * 25.41689 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 2.4207 -4.0350 1.4391 13 8 1.2260 -4.2876 2.1813 14 6 1.1812 -4.7524 -0.6082 15 7 0.7356 -4.3363 -1.9403 16 6 -0.0579 -5.1463 -2.6689 17 8 -0.3988 -6.2217 -2.2238 18 6 -0.5212 -4.7156 -4.0366 19 6 -1.4021 -5.8090 -4.6444 20 1 -2.2017 -6.0787 -3.9544 21 6 -0.5711 -7.0225 -4.9909 22 6 -0.8786 -7.4806 -6.1738 23 6 -1.9664 -6.6493 -6.8133 24 6 -1.9915 -5.3378 -5.9941 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 3.0412 -4.9311 1.4335 28 1 2.9701 -3.2156 1.9028 29 1 1.3804 -4.5339 3.1035 30 1 0.3131 -4.9200 0.0295 31 1 1.7562 -5.6749 -0.6890 32 1 1.0081 -3.4761 -2.2960 33 1 -1.0943 -3.7922 -3.9521 34 1 0.3442 -4.5486 -4.6777 35 1 0.1789 -7.4541 -4.3446 36 1 -0.4162 -8.3408 -6.6350 37 1 -2.9264 -7.1605 -6.7420 38 1 -1.7244 -6.4411 -7.8555 39 1 -3.0114 -4.9738 -5.8700 40 1 -1.3594 -4.5775 -6.4529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331667184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:42 Heat of formation + Delta-G solvation = -91.444586 kcal Electronic energy + Delta-G solvation = -20476.571381 eV Core-core repulsion = 17290.476456 eV Total energy + Delta-G solvation = -3186.094925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96077 -39.31360 -38.45992 -36.37068 -35.13089 -33.26382 -32.36103 -30.07955 -29.75209 -27.29128 -25.77871 -25.20883 -21.62229 -21.52161 -21.09946 -19.61320 -19.36673 -18.16849 -17.87607 -17.29050 -16.83780 -16.58214 -16.15882 -15.78337 -15.49327 -15.22586 -14.83113 -14.53429 -14.30280 -13.87210 -13.47274 -13.05601 -12.89461 -12.74683 -12.72763 -12.65292 -12.62136 -12.25351 -12.07375 -11.98373 -11.87217 -11.73277 -11.65947 -11.02282 -10.74855 -10.69459 -9.94315 -9.76559 -9.00147 -7.89438 -5.18765 1.41748 1.51131 1.51913 1.59813 1.74562 2.37916 2.58781 3.42933 3.60938 3.67829 3.76159 3.90668 4.00124 4.02186 4.10865 4.37724 4.44512 4.53900 4.56311 4.59201 4.62296 4.69301 4.79266 4.88818 4.99340 5.00198 5.03053 5.11988 5.23924 5.31480 5.43546 5.53810 5.58633 5.70717 6.03222 6.29311 6.67692 7.05759 7.34567 7.37556 8.09567 8.35487 9.33423 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.004368 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.442063 B = 6409.419925 C = 7494.578275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.079 0.921 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.130 3.870 15 N -0.715 5.715 16 C 0.505 3.495 17 O -0.586 6.586 18 C -0.126 4.126 19 C -0.054 4.054 20 H 0.066 0.934 21 C -0.166 4.166 22 C -0.171 4.171 23 C -0.098 4.098 24 C -0.119 4.119 25 H 0.249 0.751 26 H 0.372 0.628 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.385 0.615 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -11.526 -10.418 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.370 4.370 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.052 3.948 11 H 0.097 0.903 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.006 3.994 15 N -0.366 5.366 16 C 0.293 3.707 17 O -0.467 6.467 18 C -0.166 4.166 19 C -0.073 4.073 20 H 0.084 0.916 21 C -0.184 4.184 22 C -0.188 4.188 23 C -0.135 4.135 24 C -0.156 4.156 25 H 0.057 0.943 26 H 0.204 0.796 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.233 0.767 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.246 0.754 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.369 -12.002 -10.673 16.120 hybrid contribution 0.413 1.217 1.085 1.682 sum 1.782 -10.786 -9.588 14.541 Atomic orbital electron populations 1.69842 1.06664 1.25797 1.59373 1.25474 0.96123 1.00791 1.03823 0.85210 0.77588 0.79918 0.77387 1.21255 1.23072 1.19603 1.19619 0.91483 0.84866 1.41035 0.90126 1.42467 1.05347 1.00178 1.88186 1.20839 0.95116 0.85400 0.93438 0.90324 1.22887 0.86504 0.98526 0.93780 1.86525 1.32900 1.92072 1.27588 1.21311 0.98198 0.96923 0.83015 1.46068 1.50882 1.22016 1.17663 1.21270 0.77390 0.83870 0.88142 1.90633 1.58149 1.24247 1.73645 1.21742 1.02145 1.00696 0.92020 1.20802 0.96282 0.92728 0.97457 0.91625 1.23220 0.99855 0.98242 0.97074 1.23513 0.98597 1.00479 0.96238 1.21387 0.97709 0.94394 1.00002 1.22589 1.01789 0.97904 0.93344 0.94262 0.79600 0.91746 0.94520 0.76703 0.93555 0.90868 0.75414 0.87774 0.87048 0.87838 0.84728 0.90285 0.89551 0.89994 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.97 44.27 29.55 68.60 2.03 46.30 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -12.31 9.93 84.04 0.83 -11.47 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.72 -34.21 4.51 -322.94 -1.46 -35.67 16 10 C 0.16 5.97 2.84 44.99 0.13 6.10 16 11 H 0.08 2.71 8.08 -2.39 -0.02 2.69 16 12 C 0.06 2.12 6.85 71.98 0.49 2.61 16 13 O -0.58 -20.59 12.64 -148.98 -1.88 -22.48 16 14 C 0.13 4.66 5.12 86.38 0.44 5.10 16 15 N -0.72 -24.41 5.39 -463.05 -2.49 -26.90 16 16 C 0.51 16.98 7.63 87.66 0.67 17.65 16 17 O -0.59 -23.40 14.92 -3.04 -0.05 -23.45 16 18 C -0.13 -3.22 5.09 29.85 0.15 -3.06 16 19 C -0.05 -1.33 2.52 -10.86 -0.03 -1.36 16 20 H 0.07 1.91 7.90 -2.38 -0.02 1.89 16 21 C -0.17 -4.16 9.26 26.27 0.24 -3.92 16 22 C -0.17 -3.41 10.77 26.27 0.28 -3.12 16 23 C -0.10 -1.62 6.81 30.54 0.21 -1.41 16 24 C -0.12 -2.16 6.71 31.71 0.21 -1.95 16 25 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.37 20.04 7.80 -92.71 -0.72 19.32 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.39 9.53 9.12 -74.06 -0.68 8.85 16 30 H 0.05 1.93 7.39 -2.38 -0.02 1.91 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.41 13.87 8.14 -92.71 -0.75 13.12 16 33 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.11 2.38 8.13 -2.39 -0.02 2.37 16 35 H 0.10 2.97 7.58 -2.91 -0.02 2.95 16 36 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.36 7.91 -2.39 -0.02 1.34 16 Total: -1.00 -68.02 333.67 -0.56 -68.58 By element: Atomic # 1 Polarization: 50.14 SS G_CDS: -1.10 Total: 49.04 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 4.11 Total: 1.83 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -3.67 Total: -119.83 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -1.93 Total: -45.92 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.02 -0.56 -68.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331667184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.862 kcal (2) G-P(sol) polarization free energy of solvation -68.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds