Wall clock time and date at job start Mon Mar 30 2020 19:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21280 * 119.99839 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00028 * 179.97438 * 16 15 14 19 19 C 1.52991 * 119.29837 * 250.22789 * 18 16 15 20 20 C 1.52997 * 60.37965 * 248.69267 * 19 18 16 21 21 H 1.09003 * 119.29874 * 111.30647 * 20 19 18 22 22 C 1.54267 * 118.20105 * 266.38245 * 20 19 18 23 23 C 1.54891 * 104.19463 * 87.78837 * 22 20 19 24 24 C 1.54268 * 117.41085 * 44.57275 * 18 16 15 25 25 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 28 28 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 29 29 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 30 30 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 31 31 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 32 32 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 33 33 H 1.08999 * 117.46631 * 356.28714 * 19 18 16 34 34 H 1.09006 * 117.46439 * 141.09432 * 19 18 16 35 35 H 1.09001 * 110.48911 * 206.46347 * 22 20 19 36 36 H 1.08995 * 110.48627 * 329.11490 * 22 20 19 37 37 H 1.08998 * 110.75917 * 80.37296 * 23 22 20 38 38 H 1.08998 * 110.75807 * 203.56502 * 23 22 20 39 39 H 1.09002 * 110.48460 * 235.04733 * 24 18 16 40 40 H 1.08999 * 110.48841 * 357.68444 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3956 -6.2340 -2.2076 18 6 -0.5141 -4.7387 -4.0296 19 6 -1.9855 -4.3825 -4.2498 20 6 -1.4103 -5.6483 -4.8882 21 1 -1.7383 -6.6235 -4.5284 22 6 -0.8753 -5.5579 -6.3323 23 6 0.6028 -5.1266 -6.1634 24 6 0.5365 -4.1101 -4.9682 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 3.0418 -4.9245 1.4445 28 1 2.9707 -3.2069 1.9060 29 1 1.3816 -4.5196 3.1134 30 1 1.7558 -5.6780 -0.6740 31 1 0.3131 -4.9198 0.0415 32 1 1.0071 -3.4867 -2.2909 33 1 -2.6650 -4.5089 -3.4068 34 1 -2.2063 -3.5428 -4.9089 35 1 -0.9354 -6.5294 -6.8229 36 1 -1.4290 -4.8087 -6.8981 37 1 1.2284 -5.9824 -5.9099 38 1 0.9679 -4.6371 -7.0663 39 1 0.1997 -3.1345 -5.3187 40 1 1.4976 -4.0234 -4.4614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331758652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:59 Heat of formation + Delta-G solvation = -80.423029 kcal Electronic energy + Delta-G solvation = -20989.346966 eV Core-core repulsion = 17803.729971 eV Total energy + Delta-G solvation = -3185.616995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48061 -39.39898 -38.40761 -36.40309 -35.19982 -33.16476 -32.45664 -30.36521 -29.24657 -26.77222 -25.64951 -24.03082 -22.91705 -21.64492 -21.22610 -20.10435 -19.34513 -18.18208 -18.12556 -17.25094 -16.67243 -16.32878 -15.98208 -15.61850 -15.27385 -15.00510 -14.80517 -14.40759 -14.30447 -14.04084 -13.90713 -13.66820 -13.06650 -12.82472 -12.73515 -12.63111 -12.27414 -12.05345 -11.98190 -11.88592 -11.87392 -11.73322 -11.33081 -11.01896 -10.74786 -10.68578 -10.65101 -10.02102 -9.01064 -7.89769 -5.19453 1.50406 1.51205 1.52046 1.59289 2.21229 2.58000 2.67838 3.42123 3.49230 3.59378 3.66725 3.75890 3.88434 3.92778 4.01624 4.24181 4.41446 4.42090 4.49104 4.53987 4.58492 4.62727 4.73480 4.80573 4.84244 4.97753 4.98676 5.02059 5.16324 5.19118 5.20461 5.28516 5.47150 5.49637 5.55334 6.28612 6.59151 7.04983 7.23956 7.36695 8.08223 8.34303 9.33155 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.005570 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.413818 B = 5025.496903 C = 6089.831460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.162 3.838 11 H 0.080 0.920 12 C 0.065 3.935 13 O -0.585 6.585 14 C 0.129 3.871 15 N -0.705 5.705 16 C 0.546 3.454 17 O -0.593 6.593 18 C -0.195 4.195 19 C -0.122 4.122 20 C -0.121 4.121 21 H 0.103 0.897 22 C -0.089 4.089 23 C -0.116 4.116 24 C -0.086 4.086 25 H 0.248 0.752 26 H 0.372 0.628 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.385 0.615 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.410 0.590 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -9.828 -10.450 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.361 5.361 10 C 0.052 3.948 11 H 0.098 0.902 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.355 5.355 16 C 0.334 3.666 17 O -0.475 6.475 18 C -0.198 4.198 19 C -0.160 4.160 20 C -0.140 4.140 21 H 0.122 0.878 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.123 4.123 25 H 0.057 0.943 26 H 0.203 0.797 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.233 0.767 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.246 0.754 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.741 -10.312 -10.688 15.103 hybrid contribution 0.233 1.253 1.230 1.771 sum 2.974 -9.060 -9.458 13.430 Atomic orbital electron populations 1.69853 1.06705 1.25796 1.59365 1.25492 0.96130 1.00852 1.03815 0.85200 0.77603 0.79861 0.77385 1.21272 1.23055 1.19515 1.19617 0.91484 0.84806 1.41030 0.90051 1.42469 1.05312 1.00188 1.88181 1.20839 0.95039 0.85315 0.93557 0.90243 1.22877 0.86511 0.98630 0.93601 1.86529 1.32914 1.92255 1.27428 1.21379 0.98337 0.97207 0.82620 1.45928 1.50558 1.21677 1.17347 1.19930 0.77138 0.83243 0.86260 1.90611 1.58754 1.24656 1.73477 1.22446 0.94675 1.09374 0.93278 1.23166 0.90977 0.99467 1.02347 1.23466 1.00481 0.95135 0.94927 0.87844 1.22016 0.95241 1.03070 0.92274 1.23022 0.96570 0.98067 0.97650 1.22366 0.96250 0.99191 0.94507 0.94269 0.79677 0.91662 0.94383 0.76663 0.90665 0.93448 0.75362 0.89585 0.85925 0.89568 0.89392 0.91832 0.88842 0.89649 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.10 13.06 21.65 0.28 -57.81 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 4 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.24 -12.36 9.93 84.03 0.83 -11.53 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -34.64 4.51 -322.94 -1.46 -36.09 16 10 C 0.16 6.09 2.84 44.99 0.13 6.21 16 11 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 12 C 0.06 2.16 6.85 71.98 0.49 2.65 16 13 O -0.58 -20.77 12.64 -148.98 -1.88 -22.66 16 14 C 0.13 4.76 5.12 86.38 0.44 5.21 16 15 N -0.71 -25.60 5.21 -463.06 -2.41 -28.02 16 16 C 0.55 20.06 7.42 87.66 0.65 20.71 16 17 O -0.59 -25.55 16.79 -3.03 -0.05 -25.60 16 18 C -0.19 -5.59 2.63 -52.21 -0.14 -5.73 16 19 C -0.12 -3.17 9.85 30.59 0.30 -2.87 16 20 C -0.12 -2.95 6.54 -10.07 -0.07 -3.02 16 21 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 22 C -0.09 -1.52 6.63 31.67 0.21 -1.31 16 23 C -0.12 -2.06 6.96 32.66 0.23 -1.83 16 24 C -0.09 -1.97 6.34 32.44 0.21 -1.76 16 25 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.39 9.60 9.12 -74.05 -0.68 8.93 16 30 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 2.02 7.39 -2.39 -0.02 2.00 16 32 H 0.41 14.93 7.61 -92.71 -0.71 14.23 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.65 7.56 -2.39 -0.02 1.63 16 Total: -1.00 -69.34 332.96 -0.78 -70.12 By element: Atomic # 1 Polarization: 51.25 SS G_CDS: -1.04 Total: 50.20 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 3.76 Total: 3.32 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -3.59 Total: -121.92 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.93 Total: -48.26 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.34 -0.78 -70.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331758652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.305 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds