Wall clock time and date at job start Mon Mar 30 2020 19:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99909 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00395 * 179.97438 * 12 11 10 15 15 C 1.47020 * 125.64349 * 359.68870 * 14 12 11 16 16 C 1.54336 * 107.26433 * 178.84754 * 15 14 12 17 17 C 1.55155 * 103.02048 * 338.14603 * 16 15 14 18 18 H 1.09005 * 111.00215 * 277.23109 * 17 16 15 19 19 C 1.53000 * 111.00620 * 153.37786 * 17 16 15 20 20 C 1.50708 * 109.46729 * 72.80263 * 19 17 16 21 21 N 1.34779 * 119.99316 * 180.02562 * 20 19 17 22 22 O 1.21276 * 120.00265 * 359.97438 * 20 19 17 23 23 C 1.47418 * 125.65006 * 179.97438 * 14 12 11 24 24 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 26 26 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 27 27 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 28 28 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 30 30 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 31 31 H 1.08997 * 109.88311 * 298.39385 * 15 14 12 32 32 H 1.09003 * 109.88034 * 59.56420 * 15 14 12 33 33 H 1.08999 * 110.85335 * 219.67468 * 16 15 14 34 34 H 1.09007 * 110.66433 * 96.51964 * 16 15 14 35 35 H 1.09000 * 109.47313 * 192.79606 * 19 17 16 36 36 H 1.08996 * 109.47142 * 312.80120 * 19 17 16 37 37 H 0.96996 * 120.00284 * 359.97438 * 21 20 19 38 38 H 0.96997 * 119.99547 * 179.97438 * 21 20 19 39 39 H 1.09005 * 110.36736 * 322.93295 * 23 14 12 40 40 H 1.09002 * 110.36811 * 85.25571 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 8 3.6522 -5.9108 -0.0008 14 7 2.0106 -7.4032 0.0015 15 6 0.5986 -7.8128 0.0096 16 6 0.5690 -9.3556 -0.0221 17 6 1.9584 -9.7199 -0.6089 18 1 1.9505 -9.6605 -1.6973 19 6 2.4052 -11.1062 -0.1406 20 6 1.5932 -12.1609 -0.8474 21 7 1.8137 -13.4655 -0.5905 22 8 0.7408 -11.8358 -1.6465 23 6 2.8537 -8.6125 0.0005 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6242 -2.5567 0.8904 26 1 0.6248 -2.5571 -0.8896 27 1 2.8720 -3.6043 -0.8895 28 1 2.8721 -3.6042 0.8905 29 1 0.8542 -5.0446 0.8914 30 1 0.8534 -5.0451 -0.8886 31 1 0.1124 -7.4493 0.9149 32 1 0.0925 -7.4161 -0.8705 33 1 -0.2298 -9.7151 -0.6706 34 1 0.4578 -9.7590 0.9845 35 1 3.4612 -11.2451 -0.3721 36 1 2.2547 -11.1922 0.9355 37 1 2.4952 -13.7255 0.0489 38 1 1.2909 -14.1444 -1.0451 39 1 3.7386 -8.4575 -0.6168 40 1 3.1415 -8.8752 1.0185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527434674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:46 Heat of formation + Delta-G solvation = -104.853793 kcal Electronic energy + Delta-G solvation = -19918.660815 eV Core-core repulsion = 16731.984423 eV Total energy + Delta-G solvation = -3186.676392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41782 -39.53424 -37.48734 -34.42429 -34.12906 -33.13965 -31.97956 -29.88915 -28.38707 -26.72826 -23.85395 -22.79662 -21.68619 -20.54795 -20.34300 -18.98571 -17.89271 -17.25682 -16.93843 -16.39356 -16.25697 -15.67472 -15.14033 -14.65942 -14.16629 -13.77262 -13.66025 -13.50569 -13.22861 -12.89765 -12.79936 -12.60897 -12.15335 -11.54825 -11.43296 -11.42125 -11.17396 -10.96381 -10.82001 -10.67404 -10.34866 -10.14808 -10.06457 -9.78760 -9.76309 -9.48077 -8.62397 -8.46111 -8.25324 -6.29224 -3.97012 2.21573 2.87421 2.94366 3.15968 3.49878 3.52268 3.70727 4.12873 4.23258 4.45075 4.61073 4.62422 4.87498 4.96750 5.02077 5.11815 5.18727 5.31805 5.47923 5.51477 5.59213 5.62937 5.66070 5.72335 5.86727 6.00633 6.16337 6.30069 6.32518 6.63987 6.81468 6.84231 7.03878 7.49231 7.58962 7.61506 7.81733 8.31478 8.39268 8.55512 8.96814 9.74624 11.11632 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.059709 B = 0.002721 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.826406 B =10286.064086 C =10600.950078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.049 0.951 9 C 0.007 3.993 10 C -0.088 4.088 11 C -0.134 4.134 12 C 0.530 3.470 13 O -0.537 6.537 14 N -0.627 5.627 15 C 0.100 3.900 16 C -0.124 4.124 17 C -0.088 4.088 18 H 0.095 0.905 19 C -0.133 4.133 20 C 0.517 3.483 21 N -0.860 5.860 22 O -0.538 6.538 23 C 0.110 3.890 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.401 0.599 38 H 0.401 0.599 39 H 0.078 0.922 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -29.071 1.681 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.637 4.637 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.126 4.126 11 C -0.174 4.174 12 C 0.320 3.680 13 O -0.413 6.413 14 N -0.363 5.363 15 C -0.023 4.023 16 C -0.162 4.162 17 C -0.107 4.107 18 H 0.113 0.887 19 C -0.173 4.173 20 C 0.302 3.698 21 N -0.424 5.424 22 O -0.414 6.414 23 C -0.013 4.013 24 H 0.078 0.922 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.096 0.904 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.370 -26.774 1.199 26.906 hybrid contribution 0.263 -2.336 0.198 2.359 sum 2.634 -29.110 1.398 29.262 Atomic orbital electron populations 1.70787 1.06856 1.30471 1.47130 1.25864 0.96583 1.02747 0.93878 0.83542 0.74856 0.75283 0.76556 1.20830 1.21448 1.21451 1.22079 0.94442 0.92001 1.55185 0.93239 1.19257 0.94611 0.93267 0.95822 1.21320 0.98356 0.91022 1.01907 1.21835 0.98111 0.93894 1.03565 1.20920 0.90064 0.82271 0.74747 1.90680 1.17296 1.83903 1.49464 1.48599 1.07398 1.05271 1.75076 1.22049 0.82830 0.95183 1.02222 1.22712 0.97871 0.93957 1.01632 1.22124 0.95217 0.91671 1.01732 0.88669 1.21616 1.00883 0.93186 1.01605 1.20685 0.83424 0.83793 0.81916 1.43925 1.42717 1.07744 1.47969 1.90767 1.33896 1.81658 1.35033 1.22167 0.94447 0.84034 1.00670 0.92216 0.97528 0.97514 0.92522 0.92547 0.89520 0.89478 0.91166 0.91086 0.89126 0.90931 0.88228 0.88289 0.77048 0.76880 0.90378 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.82 13.65 55.43 0.76 -28.06 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 26.28 29.90 -169.99 -5.08 21.19 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.60 -17.95 9.11 -34.44 -0.31 -18.26 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 10 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C -0.13 -2.39 4.89 -27.89 -0.14 -2.52 16 12 C 0.53 9.28 7.85 -10.99 -0.09 9.19 16 13 O -0.54 -11.40 16.24 5.55 0.09 -11.31 16 14 N -0.63 -8.42 3.33 -170.53 -0.57 -8.99 16 15 C 0.10 1.05 6.49 -3.06 -0.02 1.03 16 16 C -0.12 -1.05 5.89 -24.89 -0.15 -1.20 16 17 C -0.09 -0.74 2.57 -88.48 -0.23 -0.97 16 18 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16 19 C -0.13 -0.69 5.21 -27.88 -0.15 -0.84 16 20 C 0.52 3.62 7.95 -10.98 -0.09 3.53 16 21 N -0.86 -2.90 8.87 31.22 0.28 -2.63 16 22 O -0.54 -6.20 15.85 5.56 0.09 -6.12 16 23 C 0.11 1.17 6.37 -2.54 -0.02 1.15 16 24 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 25 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 26 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 27 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 28 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.83 7.59 -51.93 -0.39 0.44 16 34 H 0.07 0.51 7.91 -51.93 -0.41 0.10 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.34 7.97 -51.93 -0.41 -0.07 16 37 H 0.40 0.14 8.83 -40.82 -0.36 -0.22 16 38 H 0.40 1.19 8.93 -40.82 -0.36 0.82 16 39 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 40 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -38.07 332.74 -7.41 -45.48 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -6.47 Total: -3.94 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.51 Total: -10.65 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.47 Total: -39.67 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.08 Total: 21.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -38.07 -7.41 -45.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527434674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.372 kcal (2) G-P(sol) polarization free energy of solvation -38.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds