Wall clock time and date at job start Mon Mar 30 2020 19:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99909 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00395 * 179.97438 * 12 11 10 15 15 C 1.47020 * 125.64349 * 359.68870 * 14 12 11 16 16 C 1.54336 * 107.26433 * 178.84754 * 15 14 12 17 17 C 1.55155 * 103.02048 * 338.14603 * 16 15 14 18 18 H 1.09005 * 111.00215 * 277.23109 * 17 16 15 19 19 C 1.53000 * 111.00620 * 153.37786 * 17 16 15 20 20 C 1.50708 * 109.46729 * 72.80263 * 19 17 16 21 21 N 1.34779 * 119.99316 * 180.02562 * 20 19 17 22 22 O 1.21276 * 120.00265 * 359.97438 * 20 19 17 23 23 C 1.47418 * 125.65006 * 179.97438 * 14 12 11 24 24 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 26 26 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 27 27 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 28 28 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 30 30 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 31 31 H 1.08997 * 109.88311 * 298.39385 * 15 14 12 32 32 H 1.09003 * 109.88034 * 59.56420 * 15 14 12 33 33 H 1.08999 * 110.85335 * 219.67468 * 16 15 14 34 34 H 1.09007 * 110.66433 * 96.51964 * 16 15 14 35 35 H 1.09000 * 109.47313 * 192.79606 * 19 17 16 36 36 H 1.08996 * 109.47142 * 312.80120 * 19 17 16 37 37 H 0.96996 * 120.00284 * 359.97438 * 21 20 19 38 38 H 0.96997 * 119.99547 * 179.97438 * 21 20 19 39 39 H 1.09005 * 110.36736 * 322.93295 * 23 14 12 40 40 H 1.09002 * 110.36811 * 85.25571 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 8 3.6522 -5.9108 -0.0008 14 7 2.0106 -7.4032 0.0015 15 6 0.5986 -7.8128 0.0096 16 6 0.5690 -9.3556 -0.0221 17 6 1.9584 -9.7199 -0.6089 18 1 1.9505 -9.6605 -1.6973 19 6 2.4052 -11.1062 -0.1406 20 6 1.5932 -12.1609 -0.8474 21 7 1.8137 -13.4655 -0.5905 22 8 0.7408 -11.8358 -1.6465 23 6 2.8537 -8.6125 0.0005 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6242 -2.5567 0.8904 26 1 0.6248 -2.5571 -0.8896 27 1 2.8720 -3.6043 -0.8895 28 1 2.8721 -3.6042 0.8905 29 1 0.8542 -5.0446 0.8914 30 1 0.8534 -5.0451 -0.8886 31 1 0.1124 -7.4493 0.9149 32 1 0.0925 -7.4161 -0.8705 33 1 -0.2298 -9.7151 -0.6706 34 1 0.4578 -9.7590 0.9845 35 1 3.4612 -11.2451 -0.3721 36 1 2.2547 -11.1922 0.9355 37 1 2.4952 -13.7255 0.0489 38 1 1.2909 -14.1444 -1.0451 39 1 3.7386 -8.4575 -0.6168 40 1 3.1415 -8.8752 1.0185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527434674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:45 Heat of formation + Delta-G solvation = -133.471960 kcal Electronic energy + Delta-G solvation = -19919.901792 eV Core-core repulsion = 16731.984423 eV Total energy + Delta-G solvation = -3187.917369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32990 -40.39926 -38.55323 -36.47050 -34.61730 -34.27015 -33.72409 -30.69166 -29.86299 -27.96698 -25.61519 -24.11181 -22.60691 -22.07864 -20.96128 -20.20332 -18.99482 -18.37732 -18.01537 -17.53807 -17.24282 -16.65765 -16.08997 -15.90173 -15.64351 -15.17957 -15.15073 -14.60536 -14.44568 -13.99297 -13.97480 -13.58877 -13.43810 -13.13718 -12.84087 -12.69207 -12.53867 -12.23752 -11.99585 -11.82191 -11.77091 -11.72312 -11.62529 -11.04233 -10.93687 -10.63049 -10.57077 -10.54537 -9.71995 -8.70116 -6.39688 1.51821 1.52975 1.60537 1.72537 1.80647 1.91259 2.56382 2.67058 3.14515 3.39022 3.55048 3.78502 3.84657 4.05649 4.08502 4.12566 4.26713 4.33402 4.50700 4.55433 4.60340 4.71995 4.75804 4.76929 4.87885 4.90872 4.95116 4.95965 5.12703 5.29217 5.36812 5.42905 5.49271 5.96467 6.00859 6.17696 6.39304 6.54223 6.58849 7.07848 7.40660 7.43091 8.71518 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.059709 B = 0.002721 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.826406 B =10286.064086 C =10600.950078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.117 2.883 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.625 4.625 8 H 0.043 0.957 9 C 0.010 3.990 10 C -0.075 4.075 11 C -0.125 4.125 12 C 0.528 3.472 13 O -0.584 6.584 14 N -0.622 5.622 15 C 0.091 3.909 16 C -0.115 4.115 17 C -0.080 4.080 18 H 0.073 0.927 19 C -0.125 4.125 20 C 0.513 3.487 21 N -0.841 5.841 22 O -0.591 6.591 23 C 0.106 3.894 24 H 0.257 0.743 25 H -0.001 1.001 26 H -0.004 1.004 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.418 0.582 38 H 0.404 0.596 39 H 0.064 0.936 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -30.693 2.691 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.235 4.235 3 Si 0.938 3.062 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.662 4.662 8 H 0.061 0.939 9 C -0.027 4.027 10 C -0.113 4.113 11 C -0.165 4.165 12 C 0.318 3.682 13 O -0.465 6.465 14 N -0.355 5.355 15 C -0.031 4.031 16 C -0.153 4.153 17 C -0.099 4.099 18 H 0.091 0.909 19 C -0.165 4.165 20 C 0.299 3.701 21 N -0.405 5.405 22 O -0.472 6.472 23 C -0.016 4.016 24 H 0.067 0.933 25 H 0.017 0.983 26 H 0.015 0.985 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.250 0.750 38 H 0.235 0.765 39 H 0.082 0.918 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.755 -28.505 2.236 28.725 hybrid contribution 0.114 -1.952 -0.118 1.959 sum 2.870 -30.457 2.118 30.665 Atomic orbital electron populations 1.70915 1.07705 1.29945 1.48668 1.27446 0.96711 1.06740 0.92640 0.82939 0.74162 0.71120 0.77963 1.20372 1.19650 1.19503 1.22515 0.94542 0.93837 1.55351 0.93875 1.19183 0.94885 0.93835 0.94771 1.21043 0.97390 0.92507 1.00382 1.21645 0.97885 0.91692 1.05258 1.20672 0.89101 0.83522 0.74895 1.90658 1.18842 1.84820 1.52168 1.48579 1.09380 1.04796 1.72787 1.22319 0.81005 0.96852 1.02894 1.22677 0.97615 0.92200 1.02768 1.22004 0.94682 0.92884 1.00370 0.90874 1.21609 1.01620 0.90404 1.02888 1.20975 0.82832 0.84983 0.81295 1.43792 1.42519 1.06710 1.47505 1.90755 1.36337 1.82576 1.37508 1.22386 0.94039 0.83380 1.01835 0.93334 0.98289 0.98521 0.94193 0.93909 0.87549 0.88038 0.89774 0.91211 0.89788 0.88671 0.86065 0.85447 0.75020 0.76469 0.91779 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.30 13.65 21.45 0.29 -59.00 16 2 C -0.04 -2.29 5.46 84.65 0.46 -1.83 16 3 Si 1.12 52.39 29.90 68.60 2.05 54.44 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.62 -38.00 9.11 25.60 0.23 -37.77 16 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.01 0.56 4.28 29.85 0.13 0.69 16 10 C -0.07 -3.48 4.44 30.60 0.14 -3.34 16 11 C -0.13 -4.41 4.89 29.85 0.15 -4.26 16 12 C 0.53 18.37 7.85 87.66 0.69 19.05 16 13 O -0.58 -25.18 16.24 -3.04 -0.05 -25.23 16 14 N -0.62 -15.95 3.33 -811.82 -2.70 -18.65 16 15 C 0.09 1.74 6.49 86.73 0.56 2.30 16 16 C -0.11 -1.69 5.89 31.79 0.19 -1.51 16 17 C -0.08 -1.20 2.57 -9.41 -0.02 -1.22 16 18 H 0.07 1.45 7.87 -2.38 -0.02 1.43 16 19 C -0.13 -0.92 5.21 29.85 0.16 -0.77 16 20 C 0.51 6.11 7.95 87.66 0.70 6.81 16 21 N -0.84 -3.51 8.87 -173.53 -1.54 -5.05 16 22 O -0.59 -13.22 15.85 -3.02 -0.05 -13.26 16 23 C 0.11 2.07 6.37 86.85 0.55 2.62 16 24 H 0.26 16.33 7.22 -92.71 -0.67 15.66 16 25 H 0.00 -0.07 8.01 -2.39 -0.02 -0.08 16 26 H 0.00 -0.20 8.01 -2.39 -0.02 -0.22 16 27 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 28 H 0.04 2.06 8.10 -2.39 -0.02 2.05 16 29 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.43 7.59 -2.39 -0.02 1.41 16 34 H 0.09 1.00 7.91 -2.38 -0.02 0.98 16 35 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.13 0.28 7.97 -2.39 -0.02 0.26 16 37 H 0.42 -1.10 8.83 -92.71 -0.82 -1.92 16 38 H 0.40 1.56 8.93 -92.71 -0.83 0.74 16 39 H 0.06 1.46 8.04 -2.38 -0.02 1.44 16 40 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 Total: -1.00 -84.48 332.74 1.43 -83.06 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -0.50 Total: 2.92 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 3.93 Total: -19.22 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.95 Total: -82.70 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.10 Total: -38.49 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -84.48 1.43 -83.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527434674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.415 kcal (2) G-P(sol) polarization free energy of solvation -84.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds