Wall clock time and date at job start Mon Mar 30 2020 19:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48503 * 109.47443 * 270.00393 * 3 2 1 5 5 H 1.48505 * 109.47165 * 30.00339 * 3 2 1 6 6 H 1.48498 * 109.46988 * 150.00087 * 3 2 1 7 7 C 1.37874 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99762 * 359.97438 * 7 2 1 10 10 O 1.42901 * 113.28843 * 313.07254 * 9 7 2 11 11 C 1.53495 * 114.20645 * 180.02562 * 9 7 2 12 12 N 1.47067 * 87.98831 * 220.15111 * 11 9 7 13 13 C 1.34777 * 136.05881 * 207.08345 * 12 11 9 14 14 O 1.21278 * 120.00191 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99991 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47152 * 300.00060 * 15 13 12 17 17 C 1.53005 * 109.47304 * 59.99961 * 15 13 12 18 18 C 1.52997 * 109.47452 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 15 20 20 C 1.53000 * 109.47233 * 60.00194 * 19 18 17 21 21 C 1.52997 * 109.47060 * 299.99657 * 20 19 18 22 22 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 23 23 N 1.46906 * 109.47302 * 300.00484 * 21 20 19 24 24 C 1.47070 * 87.88611 * 27.34041 * 12 11 9 25 25 H 0.96998 * 119.99756 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99694 * 46.93009 * 10 9 7 27 27 H 1.08999 * 113.47192 * 105.37067 * 11 9 7 28 28 H 1.09005 * 113.46713 * 334.93085 * 11 9 7 29 29 H 1.09002 * 109.46935 * 59.99966 * 17 15 13 30 30 H 1.09001 * 109.46812 * 300.00308 * 17 15 13 31 31 H 1.08993 * 109.47194 * 179.97438 * 18 17 15 32 32 H 1.09002 * 109.46695 * 59.99734 * 18 17 15 33 33 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 34 34 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47398 * 59.99826 * 20 19 18 36 36 H 1.09001 * 109.47194 * 180.02562 * 20 19 18 37 37 H 1.00906 * 110.99709 * 299.99604 * 23 21 20 38 38 H 1.00904 * 111.00081 * 63.94806 * 23 21 20 39 39 H 1.08999 * 113.46395 * 87.43408 * 24 12 11 40 40 H 1.08989 * 113.47225 * 217.87945 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.1928 -2.5404 0.9587 11 6 2.1489 -3.7441 -0.0005 12 7 1.2075 -4.3593 -0.9482 13 6 0.8322 -5.6139 -1.2670 14 8 1.3283 -6.5597 -0.6925 15 6 -0.2049 -5.8414 -2.3365 16 1 -1.1360 -5.3528 -2.0495 17 6 0.2909 -5.2562 -3.6605 18 6 -0.7622 -5.4866 -4.7462 19 6 -1.0045 -6.9883 -4.9111 20 6 -1.5004 -7.5734 -3.5872 21 6 -0.4473 -7.3430 -2.5015 22 1 -0.8003 -7.7601 -1.5584 23 7 0.8074 -8.0018 -2.8887 24 6 0.8606 -3.0033 -1.3997 25 1 -0.4850 0.8400 0.0004 26 1 -0.3709 -1.7547 0.9565 27 1 2.1879 -4.2512 0.9635 28 1 3.1374 -3.5665 -0.4242 29 1 1.2221 -5.7448 -3.9475 30 1 0.4632 -4.1864 -3.5430 31 1 -0.4091 -5.0694 -5.6891 32 1 -1.6931 -4.9978 -4.4588 33 1 -0.0736 -7.4771 -5.1983 34 1 -1.7551 -7.1524 -5.6843 35 1 -2.4313 -7.0845 -3.3000 36 1 -1.6726 -8.6433 -3.7046 37 1 0.6736 -8.9952 -3.0039 38 1 1.1892 -7.5887 -3.7264 39 1 1.5095 -2.6303 -2.1921 40 1 -0.1980 -2.8791 -1.6275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:37:17 Heat of formation + Delta-G solvation = -79.577818 kcal Electronic energy + Delta-G solvation = -21682.763597 eV Core-core repulsion = 18497.183253 eV Total energy + Delta-G solvation = -3185.580344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56861 -40.09513 -38.33537 -35.86705 -34.11788 -33.73231 -32.42353 -30.16307 -29.39078 -27.13434 -26.77648 -24.22409 -23.30897 -21.82192 -20.21302 -19.76793 -19.13609 -17.79335 -17.65174 -17.08659 -16.55624 -16.18255 -15.91591 -15.60404 -15.36283 -14.96087 -14.86181 -14.54394 -14.05221 -13.84568 -13.52305 -13.40088 -13.36228 -13.00141 -12.87946 -12.76610 -12.71155 -12.25560 -12.22871 -12.14172 -11.70320 -11.41564 -11.26003 -11.06383 -10.77782 -10.53432 -10.14037 -9.46610 -9.35484 -8.26438 -6.43606 1.47256 1.50780 1.60145 1.81979 2.07866 2.41865 2.95598 3.43456 3.60925 3.73503 3.78872 3.88376 4.08460 4.16416 4.20120 4.22791 4.35857 4.45432 4.52791 4.64250 4.64935 4.71712 4.81219 4.86301 4.92298 5.00566 5.08370 5.13047 5.15463 5.26399 5.27194 5.34122 5.44901 5.73631 5.92861 6.37933 6.62146 6.70842 7.02324 7.29339 7.37670 7.50086 8.79673 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.005006 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.974135 B = 5592.500546 C = 6000.709444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.033 3.967 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.218 3.782 10 O -0.587 6.587 11 C 0.105 3.895 12 N -0.641 5.641 13 C 0.532 3.468 14 O -0.570 6.570 15 C -0.087 4.087 16 H 0.091 0.909 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.147 4.147 21 C 0.118 3.882 22 H 0.060 0.940 23 N -0.840 5.840 24 C 0.094 3.906 25 H 0.277 0.723 26 H 0.389 0.611 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.346 0.654 38 H 0.339 0.661 39 H 0.089 0.911 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -8.159 -12.075 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.167 4.167 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.091 0.909 9 C 0.176 3.824 10 O -0.400 6.400 11 C -0.018 4.018 12 N -0.376 5.376 13 C 0.323 3.677 14 O -0.449 6.449 15 C -0.109 4.109 16 H 0.109 0.891 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.186 4.186 21 C 0.006 3.994 22 H 0.079 0.921 23 N -0.373 5.373 24 C -0.029 4.029 25 H 0.087 0.913 26 H 0.245 0.755 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.107 0.893 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.853 -9.094 -10.987 14.545 hybrid contribution -0.377 1.189 -0.493 1.341 sum -3.230 -7.905 -11.480 14.308 Atomic orbital electron populations 1.69330 1.07179 1.28952 1.50437 1.25763 0.95757 1.02646 0.92565 0.85359 0.78445 0.78134 0.78520 1.19498 1.20840 1.19563 1.21665 0.94133 0.90635 1.52617 0.90925 1.19889 0.85441 0.91605 0.85432 1.86032 1.45816 1.48158 1.59984 1.23248 0.94593 0.91675 0.92264 1.49826 1.42503 1.05245 1.40013 1.20751 0.83484 0.79786 0.83692 1.90628 1.58138 1.41149 1.54987 1.21311 0.96936 0.98409 0.94205 0.89061 1.21514 0.99647 1.00646 0.92827 1.21538 0.98397 0.97080 0.98083 1.21543 1.01873 0.94991 0.97000 1.22316 0.98895 1.01931 0.95467 1.21024 0.89556 0.91028 0.97831 0.92148 1.58716 1.28416 1.07906 1.42249 1.23889 0.99979 0.78134 1.00911 0.91338 0.75547 0.93506 0.88488 0.91579 0.92046 0.90100 0.91556 0.91661 0.89952 0.91111 0.90290 0.83993 0.84533 0.89272 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.23 11.01 21.45 0.24 -45.99 16 2 C 0.03 1.62 5.39 84.65 0.46 2.07 16 3 Si 0.97 39.11 29.54 68.60 2.03 41.13 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.55 -27.73 8.70 25.60 0.22 -27.51 16 8 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.22 10.66 1.58 -11.12 -0.02 10.65 16 10 O -0.59 -31.41 13.55 -148.98 -2.02 -33.43 16 11 C 0.11 4.82 8.02 83.18 0.67 5.48 16 12 N -0.64 -27.78 3.64 -858.14 -3.12 -30.90 16 13 C 0.53 22.12 7.24 87.66 0.63 22.75 16 14 O -0.57 -27.31 15.98 -3.02 -0.05 -27.35 16 15 C -0.09 -2.69 2.23 -11.54 -0.03 -2.72 16 16 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 17 C -0.11 -2.77 4.82 30.60 0.15 -2.62 16 18 C -0.11 -2.11 5.92 30.59 0.18 -1.93 16 19 C -0.12 -1.81 5.66 30.60 0.17 -1.64 16 20 C -0.15 -2.67 5.61 30.59 0.17 -2.50 16 21 C 0.12 3.12 2.69 44.91 0.12 3.24 16 22 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 23 N -0.84 -21.84 7.91 -168.68 -1.33 -23.18 16 24 C 0.09 4.02 6.15 83.27 0.51 4.53 16 25 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 26 H 0.39 20.91 6.32 -74.06 -0.47 20.44 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.10 4.05 8.10 -2.38 -0.02 4.03 16 29 H 0.07 1.70 6.57 -2.39 -0.02 1.68 16 30 H 0.06 1.74 6.33 -2.39 -0.02 1.72 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 0.96 6.76 -2.39 -0.02 0.95 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.35 7.35 9.04 -89.69 -0.81 6.54 16 38 H 0.34 7.89 5.44 -89.69 -0.49 7.40 16 39 H 0.09 3.57 8.06 -2.39 -0.02 3.56 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -61.18 312.95 -1.72 -62.89 By element: Atomic # 1 Polarization: 47.72 SS G_CDS: -0.70 Total: 47.02 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 3.24 Total: 9.81 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.22 Total: -100.07 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -2.07 Total: -60.78 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Total: -61.18 -1.72 -62.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.686 kcal (2) G-P(sol) polarization free energy of solvation -61.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds