Wall clock time and date at job start Mon Mar 30 2020 19:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48499 * 109.47025 * 240.00033 * 3 2 1 5 5 H 1.48498 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46923 * 119.99974 * 3 2 1 7 7 C 1.38812 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99860 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00313 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00391 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47240 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46819 * 60.00187 * 11 10 9 13 13 O 1.42897 * 109.46987 * 299.99920 * 11 10 9 14 14 C 1.53000 * 109.46989 * 180.02562 * 11 10 9 15 15 N 1.46504 * 109.47000 * 185.00287 * 14 11 10 16 16 C 1.34773 * 119.99742 * 179.97438 * 15 14 11 17 17 O 1.21277 * 120.00313 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99707 * 179.97438 * 16 15 14 19 19 H 1.09002 * 115.52770 * 325.49380 * 18 16 15 20 20 C 1.53002 * 117.44446 * 110.96574 * 18 16 15 21 21 H 1.09000 * 119.29374 * 356.30131 * 20 18 16 22 22 C 1.54259 * 118.19867 * 201.22222 * 20 18 16 23 23 C 1.54888 * 104.19696 * 272.20842 * 22 20 18 24 24 C 1.54884 * 102.74784 * 37.94170 * 23 22 20 25 25 C 1.53006 * 117.45899 * 180.02562 * 18 16 15 26 26 H 1.08996 * 119.30104 * 3.72708 * 25 18 16 27 27 H 0.96999 * 120.00371 * 359.97438 * 1 2 3 28 28 H 0.97008 * 119.99389 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47075 * 59.99796 * 10 9 7 30 30 H 1.09007 * 109.46970 * 300.00191 * 10 9 7 31 31 H 0.96694 * 114.00576 * 299.99941 * 13 11 10 32 32 H 1.08997 * 109.47096 * 64.99819 * 14 11 10 33 33 H 1.09003 * 109.47031 * 305.00062 * 14 11 10 34 34 H 0.96999 * 120.00057 * 359.97438 * 15 14 11 35 35 H 1.08994 * 110.49039 * 30.89076 * 22 20 18 36 36 H 1.09008 * 110.48579 * 153.53421 * 22 20 18 37 37 H 1.08996 * 110.75552 * 156.26080 * 23 22 20 38 38 H 1.08997 * 110.75677 * 279.63082 * 23 22 20 39 39 H 1.09004 * 110.49016 * 203.37595 * 24 23 22 40 40 H 1.09002 * 110.48719 * 80.73868 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.4369 -4.7622 -0.8897 13 8 0.2427 -4.7438 1.1672 14 6 1.8288 -6.1447 0.0008 15 7 0.8813 -7.2557 -0.1191 16 6 1.3315 -8.5259 -0.1404 17 8 2.5209 -8.7492 -0.0609 18 6 0.3568 -9.6687 -0.2631 19 1 -0.6038 -9.5218 0.2305 20 6 0.3643 -10.4646 -1.5698 21 1 1.0188 -10.1495 -2.3825 22 6 -0.8946 -11.2778 -1.9351 23 6 -0.6735 -12.6488 -1.2492 24 6 -0.0033 -12.2564 0.0909 25 6 0.9310 -11.0868 -0.2810 26 1 2.0028 -11.2301 -0.1444 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.6847 -3.7145 0.8894 30 1 2.6848 -3.7145 -0.8906 31 1 0.7351 -4.7889 1.9982 32 1 2.3867 -6.2417 0.9321 33 1 2.5209 -6.1651 -0.8411 34 1 -0.0699 -7.0771 -0.1831 35 1 -1.7887 -10.7943 -1.5417 36 1 -0.9698 -11.3997 -3.0157 37 1 -1.6250 -13.1505 -1.0730 38 1 -0.0094 -13.2758 -1.8441 39 1 0.5720 -13.0924 0.4890 40 1 -0.7534 -11.9308 0.8116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732638442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:34:42 Heat of formation + Delta-G solvation = -62.090015 kcal Electronic energy + Delta-G solvation = -19831.091671 eV Core-core repulsion = 16646.269656 eV Total energy + Delta-G solvation = -3184.822016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58041 -38.77687 -37.48061 -34.38442 -33.98179 -32.13122 -31.28562 -29.17056 -28.58319 -25.88965 -23.93536 -22.39909 -21.43481 -21.00504 -20.12893 -19.95168 -17.79274 -17.15266 -16.46413 -16.03542 -15.74556 -15.30602 -14.86494 -14.48531 -14.42999 -13.77536 -13.58012 -13.49140 -13.14916 -13.00706 -12.64020 -12.32161 -11.89525 -11.81179 -11.63868 -11.48917 -11.21151 -10.96761 -10.81195 -10.63218 -10.42330 -10.21273 -10.18623 -9.94934 -9.79426 -9.47312 -9.11093 -8.90809 -6.95150 -5.76904 -3.06783 2.34847 2.99150 3.43729 3.44901 3.47916 3.49176 4.18989 4.35766 4.40928 4.53731 4.69764 4.80532 4.83408 4.87538 4.94108 5.05779 5.10409 5.24150 5.24667 5.36553 5.48401 5.54654 5.60326 5.66444 5.71573 5.73311 5.81875 5.93888 5.94466 6.04817 6.18882 6.38844 6.49727 6.66265 7.45826 7.67085 7.93210 8.16800 8.41312 9.52842 10.09357 10.45340 11.45382 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.053623 B = 0.002722 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.039004 B =10285.595222 C =10470.714000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.104 0.896 13 O -0.552 6.552 14 C 0.090 3.910 15 N -0.716 5.716 16 C 0.541 3.459 17 O -0.545 6.545 18 C -0.162 4.162 19 H 0.121 0.879 20 C -0.139 4.139 21 H 0.114 0.886 22 C -0.097 4.097 23 C -0.124 4.124 24 C -0.097 4.097 25 C -0.131 4.131 26 H 0.122 0.878 27 H 0.256 0.744 28 H 0.389 0.611 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.374 0.626 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -24.826 -1.478 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.030 3.970 12 H 0.122 0.878 13 O -0.357 6.357 14 C -0.035 4.035 15 N -0.367 5.367 16 C 0.327 3.673 17 O -0.422 6.422 18 C -0.183 4.183 19 H 0.139 0.861 20 C -0.157 4.157 21 H 0.132 0.868 22 C -0.134 4.134 23 C -0.161 4.161 24 C -0.135 4.135 25 C -0.150 4.150 26 H 0.140 0.860 27 H 0.066 0.934 28 H 0.224 0.776 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.221 0.779 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.241 0.759 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.995 -24.794 -1.871 24.944 hybrid contribution 0.273 1.180 0.375 1.268 sum -1.722 -23.614 -1.496 23.724 Atomic orbital electron populations 1.69666 1.05116 1.25821 1.57243 1.24765 0.95538 0.97740 1.02804 0.86247 0.78506 0.83425 0.77866 1.21226 1.21634 1.21235 1.19176 0.90971 0.84109 1.43332 0.91265 1.42226 1.06124 0.99349 1.89374 1.21194 0.93517 0.86625 0.98881 1.22383 0.93273 0.91733 0.89656 0.87789 1.86570 1.37011 1.96417 1.15707 1.22125 0.92385 0.85993 1.02970 1.45857 1.11319 1.05285 1.74242 1.19593 0.88487 0.83278 0.75929 1.90694 1.16885 1.84719 1.49948 1.22371 1.00669 0.91781 1.03515 0.86125 1.23261 1.00331 1.01297 0.90859 0.86763 1.22008 0.95987 0.94541 1.00871 1.22703 1.00522 0.96988 0.95891 1.22004 0.97644 0.96361 0.97462 1.23262 1.00415 0.90269 1.01031 0.86039 0.93403 0.77634 0.95945 0.95378 0.77918 0.91048 0.90470 0.75915 0.91022 0.90810 0.91126 0.91131 0.90842 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.45 5.49 -59.91 -0.33 -18.78 16 10 C 0.13 2.46 5.92 -4.04 -0.02 2.44 16 11 C 0.09 1.38 3.09 -26.73 -0.08 1.29 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 O -0.55 -8.80 13.03 -35.23 -0.46 -9.26 16 14 C 0.09 1.20 5.31 -4.04 -0.02 1.18 16 15 N -0.72 -8.58 5.50 -60.29 -0.33 -8.91 16 16 C 0.54 7.02 7.61 -10.99 -0.08 6.94 16 17 O -0.54 -9.08 16.32 5.56 0.09 -8.99 16 18 C -0.16 -1.59 5.73 -91.77 -0.53 -2.11 16 19 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 20 C -0.14 -1.22 6.64 -89.48 -0.59 -1.81 16 21 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 22 C -0.10 -0.64 6.62 -25.08 -0.17 -0.81 16 23 C -0.12 -0.74 6.91 -24.74 -0.17 -0.91 16 24 C -0.10 -0.67 6.62 -25.09 -0.17 -0.84 16 25 C -0.13 -1.22 6.39 -89.48 -0.57 -1.79 16 26 H 0.12 1.31 7.78 -51.93 -0.40 0.91 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.39 10.58 7.54 -40.82 -0.31 10.27 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.37 5.02 9.04 45.56 0.41 5.43 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.41 4.22 8.47 -40.82 -0.35 3.87 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -33.40 335.45 -8.61 -42.02 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.69 Total: 13.03 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.65 Total: -3.92 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.06 Total: -55.42 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.37 Total: -18.25 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.40 -8.61 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732638442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.073 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds