Wall clock time and date at job start Mon Mar 30 2020 19:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00359 * 2 1 4 4 N 1.34781 * 119.99954 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99847 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.46960 * 35.00328 * 5 4 2 7 7 C 1.53008 * 109.47060 * 275.00045 * 5 4 2 8 8 C 1.50703 * 109.46791 * 155.00349 * 5 4 2 9 9 O 1.21278 * 120.00355 * 20.38611 * 8 5 4 10 10 N 1.34777 * 119.99677 * 200.66533 * 8 5 4 11 11 C 1.46931 * 120.63010 * 4.63818 * 10 8 5 12 12 C 1.53190 * 108.77665 * 233.58672 * 11 10 8 13 13 C 1.53042 * 109.31254 * 305.36895 * 12 11 10 14 14 C 1.53036 * 109.53945 * 61.36802 * 13 12 11 15 15 H 1.08997 * 109.50204 * 58.61511 * 14 13 12 16 16 C 1.50698 * 109.50059 * 178.68541 * 14 13 12 17 17 H 1.07993 * 120.00468 * 119.99448 * 16 14 13 18 18 C 1.37882 * 119.99612 * 299.99475 * 16 14 13 19 19 N 1.31514 * 119.99851 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 120.00043 * 0.02562 * 18 16 14 21 21 H 1.48498 * 109.46927 * 89.99697 * 20 18 16 22 22 H 1.48494 * 109.47046 * 209.99756 * 20 18 16 23 23 H 1.48499 * 109.47197 * 329.99973 * 20 18 16 24 24 C 1.46924 * 120.63091 * 184.36706 * 10 8 5 25 25 H 1.08992 * 109.47413 * 269.99813 * 1 2 3 26 26 H 1.09003 * 109.46928 * 30.00456 * 1 2 3 27 27 H 1.09000 * 109.47091 * 149.99467 * 1 2 3 28 28 H 0.96998 * 120.00137 * 0.02562 * 4 2 1 29 29 H 1.08997 * 109.47076 * 305.40919 * 7 5 4 30 30 H 1.08998 * 109.46763 * 65.40674 * 7 5 4 31 31 H 1.09000 * 109.46659 * 185.41290 * 7 5 4 32 32 H 1.08995 * 109.58728 * 353.37591 * 11 10 8 33 33 H 1.09004 * 109.58436 * 113.80362 * 11 10 8 34 34 H 1.09002 * 109.49382 * 65.31693 * 12 11 10 35 35 H 1.08995 * 109.50269 * 185.38391 * 12 11 10 36 36 H 1.09007 * 109.45777 * 181.38241 * 13 12 11 37 37 H 1.08999 * 109.45879 * 301.33992 * 13 12 11 38 38 H 0.97002 * 120.00010 * 180.02562 * 19 18 16 39 39 H 1.09007 * 109.58330 * 246.20246 * 24 10 8 40 40 H 1.09002 * 109.58556 * 6.62105 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0089 -0.3253 0.5905 7 6 4.1564 -1.0418 -1.4358 8 6 4.1479 -2.4549 0.6020 9 8 3.4218 -3.4251 0.6506 10 7 5.4020 -2.5266 1.0905 11 6 6.2567 -1.3323 1.1371 12 6 7.5799 -1.6450 0.4313 13 6 8.2067 -2.8915 1.0602 14 6 7.2671 -4.0854 0.8760 15 1 7.0842 -4.2439 -0.1868 16 6 7.8994 -5.3190 1.4671 17 1 7.4044 -5.8490 2.2673 18 6 9.1099 -5.7711 0.9861 19 7 9.6620 -6.8474 1.5022 20 14 9.9665 -4.8540 -0.3976 21 1 10.8629 -3.8182 0.1756 22 1 10.7669 -5.8101 -1.2040 23 1 8.9505 -4.2047 -1.2644 24 6 5.9384 -3.7991 1.5920 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6959 -2.0073 0.0005 29 1 3.7164 -1.8291 -2.0478 30 1 3.8744 -0.0687 -1.8379 31 1 5.2421 -1.1382 -1.4453 32 1 5.7583 -0.5063 0.6298 33 1 6.4511 -1.0624 2.1751 34 1 7.3935 -1.8262 -0.6273 35 1 8.2597 -0.8003 0.5417 36 1 9.1604 -3.1020 0.5762 37 1 8.3699 -2.7185 2.1240 38 1 10.5138 -7.1653 1.1641 39 1 6.1073 -3.7263 2.6664 40 1 5.2299 -4.6012 1.3850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701006708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:51 Heat of formation + Delta-G solvation = -77.082281 kcal Electronic energy + Delta-G solvation = -21348.829454 eV Core-core repulsion = 18163.357325 eV Total energy + Delta-G solvation = -3185.472129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53468 -39.28090 -37.22050 -35.05648 -33.65358 -31.98559 -31.55768 -30.52873 -29.00701 -25.86613 -25.11961 -23.61670 -21.77561 -20.76362 -20.10754 -18.68901 -17.66177 -16.79392 -16.71719 -16.17022 -15.54305 -14.99412 -14.88118 -14.61026 -14.07822 -13.79508 -13.63925 -13.14521 -13.11977 -12.86732 -12.68094 -12.55692 -12.45730 -12.23164 -12.14443 -11.73635 -11.40426 -11.20779 -10.76113 -10.39430 -10.22255 -10.10243 -9.91621 -9.75391 -9.42200 -9.25499 -9.06355 -8.61734 -8.22168 -6.14357 -4.14924 2.43053 2.67399 2.86256 3.20233 3.31977 3.34247 3.42804 4.33850 4.41800 4.63814 4.91133 4.97776 5.00961 5.08834 5.16439 5.17233 5.26172 5.44947 5.47533 5.58302 5.66819 5.78062 5.90548 5.98787 6.00181 6.09709 6.20477 6.32737 6.43881 6.57807 6.65840 6.76102 7.04669 7.35188 7.38327 7.64744 7.67719 8.03505 8.27738 8.42394 8.88655 9.46849 10.98591 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.004657 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.454377 B = 6011.556120 C = 6318.097721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.552 6.552 4 N -0.713 5.713 5 C 0.121 3.879 6 H 0.109 0.891 7 C -0.158 4.158 8 C 0.509 3.491 9 O -0.545 6.545 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.139 4.139 13 C -0.123 4.123 14 C 0.006 3.994 15 H 0.031 0.969 16 C -0.516 4.516 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.266 1.266 24 C 0.127 3.873 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.411 0.589 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.265 0.735 39 H 0.065 0.935 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 13.977 -3.815 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.430 6.430 4 N -0.368 5.368 5 C 0.013 3.987 6 H 0.127 0.873 7 C -0.216 4.216 8 C 0.295 3.705 9 O -0.423 6.423 10 N -0.332 5.332 11 C -0.019 4.019 12 C -0.177 4.177 13 C -0.161 4.161 14 C -0.013 4.013 15 H 0.049 0.951 16 C -0.554 4.554 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.191 1.191 24 C 0.007 3.993 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.248 0.752 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.461 14.066 -3.775 19.167 hybrid contribution 0.592 -0.007 -0.691 0.910 sum -11.870 14.058 -4.466 18.933 Atomic orbital electron populations 1.21864 0.91350 1.04927 1.04919 1.20837 0.90716 0.83199 0.75241 1.90712 1.70795 1.31398 1.50060 1.45960 1.06043 1.09736 1.75032 1.20846 0.81771 0.97432 0.98687 0.87306 1.22103 1.02157 1.03252 0.94129 1.20415 0.82213 0.89528 0.78329 1.90662 1.55502 1.38221 1.57945 1.48293 1.12518 1.11807 1.60540 1.21844 0.91791 0.86866 1.01388 1.22015 0.95847 0.99652 1.00211 1.22003 0.99187 0.94446 1.00433 1.19547 0.90979 0.93990 0.96833 0.95118 1.20894 1.05311 1.08668 1.20566 0.90573 1.24984 0.97030 0.94721 0.96255 1.69891 1.18230 1.23178 1.42239 0.86827 0.79706 0.78865 0.82712 1.20531 1.22481 1.19128 1.21931 0.96602 0.82976 0.97827 0.88738 0.88830 0.89999 0.75174 0.91536 0.90946 0.90669 0.90292 0.91008 0.91993 0.91467 0.93102 0.91815 0.92539 0.91665 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.30 36.00 0.37 -0.81 16 2 C 0.51 5.83 7.90 -10.99 -0.09 5.74 16 3 O -0.55 -8.30 16.76 5.56 0.09 -8.21 16 4 N -0.71 -8.28 5.04 -54.93 -0.28 -8.56 16 5 C 0.12 1.57 2.12 -69.08 -0.15 1.43 16 6 H 0.11 1.40 5.97 -51.93 -0.31 1.09 16 7 C -0.16 -1.86 9.22 37.16 0.34 -1.52 16 8 C 0.51 8.20 6.93 -10.98 -0.08 8.12 16 9 O -0.55 -10.27 15.36 5.56 0.09 -10.18 16 10 N -0.60 -9.91 2.97 -172.50 -0.51 -10.43 16 11 C 0.10 1.42 5.89 -3.71 -0.02 1.39 16 12 C -0.14 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C -0.12 -2.43 4.65 -26.69 -0.12 -2.55 16 14 C 0.01 0.14 1.85 -91.43 -0.17 -0.03 16 15 H 0.03 0.73 7.21 -51.93 -0.37 0.36 16 16 C -0.52 -13.97 9.15 -34.44 -0.31 -14.29 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 19 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 20 Si 0.89 21.34 24.39 -169.99 -4.15 17.19 16 21 H -0.28 -6.44 6.86 56.52 0.39 -6.06 16 22 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.27 -6.13 6.53 56.52 0.37 -5.76 16 24 C 0.13 2.52 5.67 -3.49 -0.02 2.50 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.41 4.45 7.74 -40.82 -0.32 4.13 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.87 7.42 -51.93 -0.39 0.49 16 32 H 0.08 0.89 5.07 -51.93 -0.26 0.62 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 1.09 3.25 -51.92 -0.17 0.92 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.86 7.03 -51.93 -0.37 1.50 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -32.66 315.59 -5.74 -38.41 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.01 Total: 3.52 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.50 Total: -0.36 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.02 Total: -45.13 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.15 Total: 17.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.66 -5.74 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701006708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.676 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds