Wall clock time and date at job start Mon Mar 30 2020 19:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00359 * 2 1 4 4 N 1.34781 * 119.99954 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99847 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.46960 * 35.00328 * 5 4 2 7 7 C 1.53008 * 109.47060 * 275.00045 * 5 4 2 8 8 C 1.50703 * 109.46791 * 155.00349 * 5 4 2 9 9 O 1.21278 * 120.00355 * 20.38611 * 8 5 4 10 10 N 1.34777 * 119.99677 * 200.66533 * 8 5 4 11 11 C 1.46931 * 120.63010 * 4.63818 * 10 8 5 12 12 C 1.53190 * 108.77665 * 233.58672 * 11 10 8 13 13 C 1.53042 * 109.31254 * 305.36895 * 12 11 10 14 14 C 1.53036 * 109.53945 * 61.36802 * 13 12 11 15 15 H 1.08997 * 109.50204 * 58.61511 * 14 13 12 16 16 C 1.50698 * 109.50059 * 178.68541 * 14 13 12 17 17 H 1.07993 * 120.00468 * 119.99448 * 16 14 13 18 18 C 1.37882 * 119.99612 * 299.99475 * 16 14 13 19 19 N 1.31514 * 119.99851 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 120.00043 * 0.02562 * 18 16 14 21 21 H 1.48498 * 109.46927 * 89.99697 * 20 18 16 22 22 H 1.48494 * 109.47046 * 209.99756 * 20 18 16 23 23 H 1.48499 * 109.47197 * 329.99973 * 20 18 16 24 24 C 1.46924 * 120.63091 * 184.36706 * 10 8 5 25 25 H 1.08992 * 109.47413 * 269.99813 * 1 2 3 26 26 H 1.09003 * 109.46928 * 30.00456 * 1 2 3 27 27 H 1.09000 * 109.47091 * 149.99467 * 1 2 3 28 28 H 0.96998 * 120.00137 * 0.02562 * 4 2 1 29 29 H 1.08997 * 109.47076 * 305.40919 * 7 5 4 30 30 H 1.08998 * 109.46763 * 65.40674 * 7 5 4 31 31 H 1.09000 * 109.46659 * 185.41290 * 7 5 4 32 32 H 1.08995 * 109.58728 * 353.37591 * 11 10 8 33 33 H 1.09004 * 109.58436 * 113.80362 * 11 10 8 34 34 H 1.09002 * 109.49382 * 65.31693 * 12 11 10 35 35 H 1.08995 * 109.50269 * 185.38391 * 12 11 10 36 36 H 1.09007 * 109.45777 * 181.38241 * 13 12 11 37 37 H 1.08999 * 109.45879 * 301.33992 * 13 12 11 38 38 H 0.97002 * 120.00010 * 180.02562 * 19 18 16 39 39 H 1.09007 * 109.58330 * 246.20246 * 24 10 8 40 40 H 1.09002 * 109.58556 * 6.62105 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0089 -0.3253 0.5905 7 6 4.1564 -1.0418 -1.4358 8 6 4.1479 -2.4549 0.6020 9 8 3.4218 -3.4251 0.6506 10 7 5.4020 -2.5266 1.0905 11 6 6.2567 -1.3323 1.1371 12 6 7.5799 -1.6450 0.4313 13 6 8.2067 -2.8915 1.0602 14 6 7.2671 -4.0854 0.8760 15 1 7.0842 -4.2439 -0.1868 16 6 7.8994 -5.3190 1.4671 17 1 7.4044 -5.8490 2.2673 18 6 9.1099 -5.7711 0.9861 19 7 9.6620 -6.8474 1.5022 20 14 9.9665 -4.8540 -0.3976 21 1 10.8629 -3.8182 0.1756 22 1 10.7669 -5.8101 -1.2040 23 1 8.9505 -4.2047 -1.2644 24 6 5.9384 -3.7991 1.5920 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6959 -2.0073 0.0005 29 1 3.7164 -1.8291 -2.0478 30 1 3.8744 -0.0687 -1.8379 31 1 5.2421 -1.1382 -1.4453 32 1 5.7583 -0.5063 0.6298 33 1 6.4511 -1.0624 2.1751 34 1 7.3935 -1.8262 -0.6273 35 1 8.2597 -0.8003 0.5417 36 1 9.1604 -3.1020 0.5762 37 1 8.3699 -2.7185 2.1240 38 1 10.5138 -7.1653 1.1641 39 1 6.1073 -3.7263 2.6664 40 1 5.2299 -4.6012 1.3850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701006708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:36:51 Heat of formation + Delta-G solvation = -101.478791 kcal Electronic energy + Delta-G solvation = -21349.887366 eV Core-core repulsion = 18163.357325 eV Total energy + Delta-G solvation = -3186.530041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71847 -40.36002 -38.64367 -36.13043 -35.37474 -33.65076 -32.64482 -31.96898 -29.75742 -27.43593 -26.67237 -24.81240 -23.25011 -21.92067 -21.38770 -20.01449 -18.98413 -18.57541 -17.84564 -17.32730 -16.69777 -16.45795 -16.04115 -15.98565 -15.45277 -15.13494 -14.92733 -14.73541 -14.25234 -14.17178 -14.03414 -13.63071 -13.38990 -13.22825 -13.04226 -12.97280 -12.92779 -12.63180 -12.43531 -12.10486 -11.92989 -11.51580 -11.31482 -11.12953 -11.02709 -10.75034 -10.69385 -10.26048 -9.63609 -8.31893 -6.37230 1.29026 1.36117 1.39863 1.46301 1.59385 1.75695 2.31021 2.36657 3.03293 3.27392 3.79911 3.94556 3.99173 4.01260 4.08322 4.19469 4.29227 4.46539 4.52016 4.58410 4.62275 4.67943 4.69213 4.73686 4.85480 4.93701 5.03946 5.08673 5.11081 5.15814 5.28400 5.35539 5.39636 5.62823 5.72556 6.24645 6.37183 6.48605 6.69235 6.98545 7.16828 7.28505 8.84790 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.004657 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.454377 B = 6011.556120 C = 6318.097721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.511 3.489 3 O -0.590 6.590 4 N -0.713 5.713 5 C 0.129 3.871 6 H 0.117 0.883 7 C -0.152 4.152 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.602 5.602 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.123 4.123 14 C 0.009 3.991 15 H 0.019 0.981 16 C -0.523 4.523 17 H 0.034 0.966 18 C 0.013 3.987 19 N -0.949 5.949 20 Si 0.954 3.046 21 H -0.259 1.259 22 H -0.303 1.303 23 H -0.249 1.249 24 C 0.139 3.861 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.415 0.585 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 17.156 -5.128 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.300 3.700 3 O -0.471 6.471 4 N -0.367 5.367 5 C 0.020 3.980 6 H 0.134 0.866 7 C -0.211 4.211 8 C 0.295 3.705 9 O -0.458 6.458 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.170 4.170 13 C -0.160 4.160 14 C -0.010 4.010 15 H 0.037 0.963 16 C -0.561 4.561 17 H 0.052 0.948 18 C -0.184 4.184 19 N -0.589 5.589 20 Si 0.781 3.219 21 H -0.184 1.184 22 H -0.231 1.231 23 H -0.173 1.173 24 C 0.017 3.983 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.253 0.747 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.145 17.276 -5.085 22.296 hybrid contribution 0.711 -1.088 -0.197 1.315 sum -12.433 16.188 -5.281 21.084 Atomic orbital electron populations 1.21906 0.87789 1.06373 1.06282 1.21600 0.92334 0.82213 0.73835 1.90693 1.71909 1.32561 1.51907 1.46043 1.05524 1.10267 1.74895 1.20791 0.82786 0.95217 0.99217 0.86564 1.22078 1.02454 1.03547 0.93008 1.21018 0.81650 0.90316 0.77514 1.90647 1.56389 1.39765 1.59035 1.48293 1.13227 1.11374 1.60395 1.22119 0.90892 0.86227 1.02794 1.21992 0.96838 0.98347 0.99867 1.21880 0.97930 0.95278 1.00959 1.19426 0.92594 0.93384 0.95640 0.96326 1.21224 1.05218 1.10282 1.19377 0.94815 1.25878 0.97918 0.95548 0.99057 1.70050 1.19020 1.25380 1.44443 0.85768 0.78929 0.77811 0.79426 1.18437 1.23114 1.17256 1.21471 0.94944 0.84404 0.97528 0.87269 0.88082 0.87881 0.74709 0.91910 0.90107 0.90084 0.87081 0.89467 0.91792 0.87820 0.94376 0.91800 0.92482 0.91847 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.30 71.23 0.73 -1.05 16 2 C 0.51 10.40 7.90 87.66 0.69 11.09 16 3 O -0.59 -16.48 16.76 -3.03 -0.05 -16.53 16 4 N -0.71 -15.05 5.04 -446.08 -2.25 -17.30 16 5 C 0.13 3.02 2.12 44.25 0.09 3.11 16 6 H 0.12 2.60 5.97 -2.39 -0.01 2.59 16 7 C -0.15 -3.16 9.22 71.98 0.66 -2.49 16 8 C 0.51 15.62 6.93 87.66 0.61 16.23 16 9 O -0.58 -21.66 15.36 -3.02 -0.05 -21.71 16 10 N -0.60 -18.91 2.97 -818.05 -2.43 -21.34 16 11 C 0.10 2.38 5.89 86.36 0.51 2.89 16 12 C -0.13 -3.47 6.08 30.67 0.19 -3.28 16 13 C -0.12 -4.58 4.65 30.62 0.14 -4.44 16 14 C 0.01 0.41 1.85 -11.32 -0.02 0.39 16 15 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 16 C -0.52 -29.37 9.15 25.60 0.23 -29.13 16 17 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 18 C 0.01 0.76 5.45 84.66 0.46 1.22 16 19 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 20 Si 0.95 43.95 24.39 68.60 1.67 45.62 16 21 H -0.26 -11.04 6.86 99.48 0.68 -10.36 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.25 -10.62 6.53 99.48 0.65 -9.97 16 24 C 0.14 5.57 5.67 86.51 0.49 6.06 16 25 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.42 8.25 7.74 -92.71 -0.72 7.54 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.59 7.42 -2.39 -0.02 1.57 16 32 H 0.11 1.97 5.07 -2.39 -0.01 1.96 16 33 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.52 3.25 -2.38 -0.01 1.51 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.06 2.73 7.03 -2.39 -0.02 2.71 16 Total: -1.00 -74.04 315.59 2.24 -71.80 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.25 Total: 17.57 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 4.79 Total: 0.59 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.38 Total: -97.35 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.10 Total: -38.23 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.67 Total: 45.62 kcal Total: -74.04 2.24 -71.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701006708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.681 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds